Wall clock time and date at job start Tue Mar 31 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31127 * 126.54878 * 2 1 4 4 C 1.34493 * 105.61250 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.28639 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47314 * 15.00441 * 5 4 3 7 7 C 1.52995 * 109.47032 * 254.99843 * 5 4 3 8 8 N 1.46906 * 109.47211 * 135.00129 * 5 4 3 9 9 C 1.46898 * 110.99888 * 204.99964 * 8 5 4 10 10 C 1.53007 * 109.46764 * 179.97438 * 9 8 5 11 11 N 1.46498 * 109.46684 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99489 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00628 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99912 * 179.97438 * 12 11 10 15 15 S 1.81000 * 109.47329 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99962 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99776 * 180.02562 * 16 15 14 19 19 N 1.31639 * 120.00164 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00130 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46933 * 59.99837 * 20 18 16 22 22 H 1.48491 * 109.47340 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47029 * 300.00366 * 20 18 16 24 24 N 1.29945 * 107.42843 * 0.24103 * 4 3 2 25 25 O 1.21305 * 110.24840 * 359.58406 * 24 4 3 26 26 H 1.08993 * 109.47067 * 89.99595 * 1 2 3 27 27 H 1.09003 * 109.46593 * 209.99736 * 1 2 3 28 28 H 1.08997 * 109.46950 * 329.99450 * 1 2 3 29 29 H 1.09003 * 109.47335 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.47311 * 299.99990 * 7 5 4 31 31 H 1.09002 * 109.46959 * 60.00275 * 7 5 4 32 32 H 1.00902 * 110.99923 * 328.95905 * 8 5 4 33 33 H 1.08995 * 109.47296 * 299.99911 * 9 8 5 34 34 H 1.08997 * 109.47334 * 60.00212 * 9 8 5 35 35 H 1.09004 * 109.47056 * 299.99764 * 10 9 8 36 36 H 1.08997 * 109.46954 * 60.00063 * 10 9 8 37 37 H 0.96999 * 120.00318 * 359.97438 * 11 10 9 38 38 H 1.08995 * 109.47325 * 300.00394 * 14 12 11 39 39 H 1.09000 * 109.46697 * 60.00035 * 14 12 11 40 40 H 0.97002 * 119.99481 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5440 0.5728 -0.0006 5 6 4.8111 1.3887 -0.0014 6 1 4.5794 2.4200 0.2647 7 6 5.4413 1.3507 -1.3950 8 7 5.7536 0.8305 0.9776 9 6 6.6962 1.8558 1.4447 10 6 7.6590 1.2383 2.4610 11 7 8.5986 2.2610 2.9273 12 6 9.5448 1.9438 3.8331 13 8 9.6188 0.8117 4.2618 14 6 10.5118 2.9956 4.3124 15 16 11.6507 2.2652 5.5147 16 6 12.6376 3.6741 5.8964 17 1 12.4346 4.6211 5.4185 18 6 13.6760 3.5668 6.8111 19 7 13.9231 2.4126 7.3940 20 14 14.7219 5.0606 7.2164 21 1 13.8592 6.1315 7.7768 22 1 15.7554 4.6852 8.2143 23 1 15.3819 5.5527 5.9805 24 7 3.4645 -0.7242 -0.0061 25 8 2.3029 -1.0736 -0.0006 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 6.3576 1.9411 -1.3957 30 1 5.6731 0.3193 -1.6609 31 1 4.7421 1.7648 -2.1213 32 1 5.2631 0.4101 1.7527 33 1 7.2613 2.2431 0.5970 34 1 6.1442 2.6693 1.9155 35 1 7.0934 0.8514 3.3087 36 1 8.2109 0.4246 1.9906 37 1 8.5397 3.1663 2.5842 38 1 11.0776 3.3822 3.4649 39 1 9.9597 3.8095 4.7823 40 1 14.6490 2.3377 8.0330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:00 Heat of formation + Delta-G solvation = 29.829506 kcal Electronic energy + Delta-G solvation = -22200.373730 eV Core-core repulsion = 18565.848168 eV Total energy + Delta-G solvation = -3634.525562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.04481 -39.24302 -38.07094 -36.12005 -34.79195 -33.54415 -32.41986 -31.35134 -29.51055 -29.33394 -27.23228 -25.49689 -25.10591 -23.64420 -22.39459 -20.98997 -20.28741 -18.60108 -18.10469 -17.76765 -16.81283 -16.33577 -15.96318 -15.43524 -15.41940 -14.90151 -14.79855 -14.57166 -14.05072 -13.96726 -13.79694 -13.77762 -13.19822 -13.07214 -12.62234 -12.58221 -12.50283 -12.34181 -12.01569 -11.88474 -11.64667 -11.54277 -11.36989 -11.03887 -11.03185 -10.76483 -10.33578 -9.82020 -9.42612 -9.05761 -9.02655 -8.89926 -8.23181 -6.49280 -6.20659 -3.91480 0.71068 1.71914 2.37069 2.82797 3.09014 3.10426 3.24058 3.27348 3.30144 3.46543 3.65240 4.01414 4.21231 4.35123 4.56158 4.62392 4.67648 4.73196 4.81142 4.89225 5.01807 5.14258 5.14685 5.19197 5.24897 5.28871 5.39402 5.52141 5.61524 5.72694 5.79910 5.88675 5.90944 6.13982 6.37569 6.58654 6.77562 7.59856 7.68850 7.74564 8.35720 8.61211 9.24346 10.86683 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.041544 B = 0.001723 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.815443 B =16243.299938 C =16416.222639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.175 3.825 3 N -0.482 5.482 4 C 0.162 3.838 5 C 0.180 3.820 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.673 5.673 9 C 0.049 3.951 10 C 0.124 3.876 11 N -0.739 5.739 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 N -0.357 5.357 25 O 0.080 5.920 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.348 0.652 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.866 -0.820 -18.525 33.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.045 4.045 3 N -0.216 5.216 4 C -0.112 4.112 5 C 0.069 3.931 6 H 0.096 0.904 7 C -0.196 4.196 8 N -0.307 5.307 9 C -0.080 4.080 10 C -0.001 4.001 11 N -0.394 5.394 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 N -0.062 5.062 25 O 0.019 5.981 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.393 -3.166 -18.153 32.189 hybrid contribution -0.223 3.186 0.173 3.199 sum -26.615 0.021 -17.980 32.119 Atomic orbital electron populations 1.20414 0.80109 1.06038 1.05501 1.28873 0.99008 0.80742 0.95871 1.71888 1.00132 1.29068 1.20552 1.25799 0.94949 0.88534 1.01894 1.19762 0.83238 0.94445 0.95624 0.90422 1.21817 1.00907 1.03708 0.93212 1.60417 1.19659 1.32123 1.18475 1.22200 0.94449 0.92914 0.98460 1.21103 0.90960 0.91597 0.96447 1.45882 1.34121 1.13528 1.45895 1.20303 0.80414 0.89529 0.77935 1.90713 1.70987 1.21614 1.55621 1.23528 1.00930 1.00816 1.05095 1.85417 1.33359 1.16032 1.48512 1.22832 1.18809 0.96895 1.29963 0.90965 1.24993 0.96631 0.96916 0.95024 1.70015 1.29785 1.23797 1.26672 0.86219 0.79417 0.81557 0.78273 1.19965 1.20802 1.19937 1.74732 0.96778 1.15433 1.19278 1.85356 1.11589 1.35809 1.65351 0.87966 0.88255 0.87685 0.90849 0.91169 0.92053 0.83296 0.89692 0.94076 0.91796 0.90449 0.76872 0.89154 0.89225 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 10.51 36.01 0.38 0.29 16 2 C 0.18 1.18 8.51 -13.06 -0.11 1.07 16 3 N -0.48 -4.42 11.55 -9.87 -0.11 -4.54 16 4 C 0.16 1.59 6.71 -156.37 -1.05 0.55 16 5 C 0.18 1.54 3.16 -68.86 -0.22 1.32 16 6 H 0.08 0.61 7.80 -51.93 -0.40 0.20 16 7 C -0.14 -1.06 9.40 37.16 0.35 -0.71 16 8 N -0.67 -6.21 6.30 -107.95 -0.68 -6.89 16 9 C 0.05 0.42 5.60 -3.82 -0.02 0.40 16 10 C 0.12 1.47 5.93 -4.04 -0.02 1.45 16 11 N -0.74 -9.82 5.56 -60.29 -0.33 -10.16 16 12 C 0.53 10.07 7.85 -10.98 -0.09 9.98 16 13 O -0.52 -12.00 15.86 5.56 0.09 -11.91 16 14 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 20 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 N -0.36 -3.82 12.15 30.90 0.38 -3.44 16 25 O 0.08 0.70 11.31 18.10 0.20 0.90 16 26 H 0.10 0.00 8.14 -51.93 -0.42 -0.43 16 27 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.07 0.49 7.45 -51.93 -0.39 0.11 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.35 3.36 8.35 -39.29 -0.33 3.04 16 33 H 0.08 0.65 7.44 -51.93 -0.39 0.26 16 34 H 0.04 0.31 8.05 -51.93 -0.42 -0.10 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -37.00 363.17 -7.47 -44.47 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.62 Total: 0.68 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.36 Total: -1.61 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.02 Total: -50.61 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.29 Total: -11.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.00 -7.47 -44.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.301 kcal (2) G-P(sol) polarization free energy of solvation -37.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds