Wall clock time and date at job start Tue Mar 31 2020 05:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.28238 * 2 1 4 4 N 1.28669 * 109.37957 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.38134 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.27888 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46816 * 194.97349 * 6 5 4 8 8 C 1.53004 * 109.47003 * 74.98057 * 6 5 4 9 9 N 1.46896 * 109.47151 * 314.97850 * 6 5 4 10 10 C 1.46905 * 110.99602 * 205.00063 * 9 6 5 11 11 C 1.53003 * 109.46949 * 180.02562 * 10 9 6 12 12 N 1.46498 * 109.47263 * 179.97438 * 11 10 9 13 13 C 1.34772 * 119.99903 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00292 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99771 * 180.02562 * 13 12 11 16 16 S 1.81008 * 109.47223 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99560 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99949 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99610 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47585 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47121 * 120.00230 * 21 19 17 24 24 H 1.48504 * 109.47153 * 239.99707 * 21 19 17 25 25 O 1.34355 * 107.43791 * 0.02562 * 5 4 3 26 26 H 1.09004 * 109.46853 * 270.02496 * 1 2 3 27 27 H 1.08997 * 109.47078 * 30.02498 * 1 2 3 28 28 H 1.09004 * 109.46818 * 150.02626 * 1 2 3 29 29 H 1.08997 * 109.46938 * 59.99535 * 8 6 5 30 30 H 1.09000 * 109.46890 * 179.97438 * 8 6 5 31 31 H 1.08997 * 109.46575 * 299.99827 * 8 6 5 32 32 H 1.00899 * 111.00223 * 81.04830 * 9 6 5 33 33 H 1.08995 * 109.47260 * 299.99917 * 10 9 6 34 34 H 1.08992 * 109.47194 * 60.00322 * 10 9 6 35 35 H 1.09003 * 109.47110 * 299.99661 * 11 10 9 36 36 H 1.09000 * 109.47167 * 59.99642 * 11 10 9 37 37 H 0.96998 * 119.99828 * 0.02562 * 12 11 10 38 38 H 1.09008 * 109.46957 * 299.99642 * 15 13 12 39 39 H 1.09000 * 109.47510 * 60.00012 * 15 13 12 40 40 H 0.97004 * 119.99610 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6255 0.0015 6 6 4.8177 -1.4638 0.0029 7 1 4.5674 -2.4911 -0.2621 8 6 5.4485 -1.4359 1.3965 9 7 5.7698 -0.9234 -0.9765 10 6 6.6939 -1.9659 -1.4429 11 6 7.6684 -1.3663 -2.4587 12 7 8.5903 -2.4057 -2.9233 13 6 9.5428 -2.1059 -3.8285 14 8 9.6370 -0.9757 -4.2580 15 6 10.4908 -3.1753 -4.3069 16 16 11.6437 -2.4660 -5.5085 17 6 12.6061 -3.8924 -5.8880 18 1 12.3864 -4.8350 -5.4090 19 6 13.6472 -3.8041 -6.8017 20 7 13.9151 -2.6550 -7.3851 21 14 14.6678 -5.3160 -7.2035 22 1 14.1671 -6.4739 -6.4200 23 1 14.5587 -5.6159 -8.6538 24 1 16.0890 -5.0604 -6.8566 25 8 2.3022 -1.0831 0.0009 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 4.7419 -1.8369 2.1232 30 1 6.3540 -2.0427 1.3977 31 1 5.6986 -0.4087 1.6616 32 1 6.2743 -0.1374 -0.5947 33 1 7.2521 -2.3624 -0.5948 34 1 6.1275 -2.7697 -1.9129 35 1 7.1105 -0.9694 -3.3069 36 1 8.2347 -0.5626 -1.9883 37 1 8.5147 -3.3097 -2.5801 38 1 11.0490 -3.5719 -3.4587 39 1 9.9244 -3.9792 -4.7770 40 1 14.6430 -2.5933 -8.0234 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:32 Heat of formation + Delta-G solvation = -0.476781 kcal Electronic energy + Delta-G solvation = -22178.425136 eV Core-core repulsion = 18542.585395 eV Total energy + Delta-G solvation = -3635.839741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.120 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -44.55933 -39.27246 -37.98950 -36.49358 -34.91882 -33.20418 -32.43394 -31.58316 -29.54109 -28.40104 -27.07105 -25.48104 -24.93940 -23.04326 -22.42514 -21.84674 -20.38354 -18.02648 -17.81071 -17.55861 -16.52231 -16.43259 -16.06424 -15.67401 -15.32407 -14.95929 -14.81234 -14.72746 -14.02150 -13.91035 -13.80041 -13.41354 -13.38913 -13.15103 -12.78342 -12.69165 -12.53493 -12.38788 -12.23268 -12.10558 -11.90752 -11.53426 -11.22455 -11.07490 -11.02484 -10.76505 -9.87199 -9.81207 -9.44112 -9.12639 -9.08373 -8.92464 -8.23430 -6.50449 -6.22174 -3.92767 0.77289 1.74212 2.06368 2.93380 3.08687 3.21171 3.24823 3.30267 3.37489 3.53302 3.93012 4.03177 4.17923 4.19763 4.31246 4.56834 4.65461 4.73008 4.73923 4.84253 4.90384 5.04812 5.09457 5.12717 5.13106 5.17081 5.25230 5.35736 5.49658 5.59146 5.70263 5.83957 5.88613 6.12288 6.25799 6.55663 6.74885 7.59300 7.66213 7.98730 8.34886 8.59370 9.23221 10.85313 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.041290 B = 0.001721 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.970488 B =16265.845701 C =16427.653767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.157 3.843 3 N -0.289 5.289 4 N -0.270 5.270 5 C 0.175 3.825 6 C 0.186 3.814 7 H 0.111 0.889 8 C -0.180 4.180 9 N -0.674 5.674 10 C 0.052 3.948 11 C 0.122 3.878 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.514 6.514 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 O -0.227 6.227 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.361 0.639 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.388 -1.462 19.878 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 N -0.136 5.136 4 N -0.116 5.116 5 C -0.037 4.037 6 C 0.074 3.926 7 H 0.129 0.871 8 C -0.240 4.240 9 N -0.308 5.308 10 C -0.077 4.077 11 C -0.002 4.002 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.388 6.388 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 O -0.106 6.106 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.171 1.719 18.482 31.275 hybrid contribution 0.625 -3.970 1.130 4.174 sum -24.546 -2.251 19.612 31.499 Atomic orbital electron populations 1.20355 0.80187 1.05814 1.05178 1.28041 0.97830 0.79661 0.99860 1.74440 0.96185 1.25612 1.17382 1.74347 1.11868 1.09128 1.16263 1.27811 0.84845 0.91666 0.99359 1.19674 0.84481 0.95725 0.92752 0.87083 1.22520 1.01909 1.04192 0.95347 1.59937 1.20399 1.10325 1.40161 1.22165 0.93644 0.94231 0.97659 1.21108 0.90591 0.90917 0.97631 1.45871 1.34429 1.13123 1.46043 1.20300 0.80273 0.89701 0.77911 1.90718 1.70591 1.22063 1.55434 1.23529 1.01157 1.00601 1.05071 1.85436 1.33610 1.15696 1.48636 1.22910 1.19034 0.96558 1.29899 0.90863 1.24997 0.96582 0.96993 0.95037 1.70029 1.29350 1.24119 1.26728 0.86111 0.79537 0.81521 0.78281 1.19640 1.20567 1.20564 1.84750 1.17465 1.38502 1.69870 0.88368 0.87454 0.88876 0.91175 0.90182 0.90739 0.81833 0.93653 0.89865 0.90514 0.91457 0.76893 0.89208 0.89182 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.01 0.38 0.19 16 2 C 0.16 1.35 8.48 -12.94 -0.11 1.24 16 3 N -0.29 -3.40 12.22 32.55 0.40 -3.00 16 4 N -0.27 -3.27 12.22 32.55 0.40 -2.87 16 5 C 0.18 1.69 7.32 -12.94 -0.09 1.59 16 6 C 0.19 1.23 3.13 -68.86 -0.22 1.01 16 7 H 0.11 0.56 7.80 -51.93 -0.40 0.16 16 8 C -0.18 -0.88 9.14 37.16 0.34 -0.54 16 9 N -0.67 -5.23 6.23 -107.95 -0.67 -5.91 16 10 C 0.05 0.36 5.60 -3.82 -0.02 0.34 16 11 C 0.12 1.34 5.93 -4.04 -0.02 1.31 16 12 N -0.74 -9.22 5.56 -60.29 -0.33 -9.55 16 13 C 0.53 9.76 7.85 -10.99 -0.09 9.68 16 14 O -0.51 -11.73 15.86 5.56 0.09 -11.65 16 15 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 21 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 O -0.23 -2.07 10.87 5.39 0.06 -2.02 16 26 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.30 7.45 -51.93 -0.39 -0.09 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.36 2.79 8.47 -39.29 -0.33 2.45 16 33 H 0.05 0.24 7.44 -51.93 -0.39 -0.14 16 34 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 3.60 8.47 -40.82 -0.35 3.26 16 38 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -37.96 363.81 -6.12 -44.08 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.62 Total: -0.69 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.59 Total: -0.91 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.52 Total: -46.75 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.15 Total: -13.66 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.96 -6.12 -44.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.607 kcal (2) G-P(sol) polarization free energy of solvation -37.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds