Wall clock time and date at job start Tue Mar 31 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.28238 * 2 1 4 4 N 1.28669 * 109.37957 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.38134 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.27888 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46816 * 194.97349 * 6 5 4 8 8 C 1.53004 * 109.47003 * 74.98057 * 6 5 4 9 9 N 1.46896 * 109.47151 * 314.97850 * 6 5 4 10 10 C 1.46905 * 110.99602 * 205.00063 * 9 6 5 11 11 C 1.53003 * 109.46949 * 180.02562 * 10 9 6 12 12 N 1.46498 * 109.47263 * 179.97438 * 11 10 9 13 13 C 1.34772 * 119.99903 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00292 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99771 * 180.02562 * 13 12 11 16 16 S 1.81008 * 109.47223 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99560 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99949 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99610 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47585 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47121 * 120.00230 * 21 19 17 24 24 H 1.48504 * 109.47153 * 239.99707 * 21 19 17 25 25 O 1.34355 * 107.43791 * 0.02562 * 5 4 3 26 26 H 1.09004 * 109.46853 * 270.02496 * 1 2 3 27 27 H 1.08997 * 109.47078 * 30.02498 * 1 2 3 28 28 H 1.09004 * 109.46818 * 150.02626 * 1 2 3 29 29 H 1.08997 * 109.46938 * 59.99535 * 8 6 5 30 30 H 1.09000 * 109.46890 * 179.97438 * 8 6 5 31 31 H 1.08997 * 109.46575 * 299.99827 * 8 6 5 32 32 H 1.00899 * 111.00223 * 81.04830 * 9 6 5 33 33 H 1.08995 * 109.47260 * 299.99917 * 10 9 6 34 34 H 1.08992 * 109.47194 * 60.00322 * 10 9 6 35 35 H 1.09003 * 109.47110 * 299.99661 * 11 10 9 36 36 H 1.09000 * 109.47167 * 59.99642 * 11 10 9 37 37 H 0.96998 * 119.99828 * 0.02562 * 12 11 10 38 38 H 1.09008 * 109.46957 * 299.99642 * 15 13 12 39 39 H 1.09000 * 109.47510 * 60.00012 * 15 13 12 40 40 H 0.97004 * 119.99610 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6255 0.0015 6 6 4.8177 -1.4638 0.0029 7 1 4.5674 -2.4911 -0.2621 8 6 5.4485 -1.4359 1.3965 9 7 5.7698 -0.9234 -0.9765 10 6 6.6939 -1.9659 -1.4429 11 6 7.6684 -1.3663 -2.4587 12 7 8.5903 -2.4057 -2.9233 13 6 9.5428 -2.1059 -3.8285 14 8 9.6370 -0.9757 -4.2580 15 6 10.4908 -3.1753 -4.3069 16 16 11.6437 -2.4660 -5.5085 17 6 12.6061 -3.8924 -5.8880 18 1 12.3864 -4.8350 -5.4090 19 6 13.6472 -3.8041 -6.8017 20 7 13.9151 -2.6550 -7.3851 21 14 14.6678 -5.3160 -7.2035 22 1 14.1671 -6.4739 -6.4200 23 1 14.5587 -5.6159 -8.6538 24 1 16.0890 -5.0604 -6.8566 25 8 2.3022 -1.0831 0.0009 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 4.7419 -1.8369 2.1232 30 1 6.3540 -2.0427 1.3977 31 1 5.6986 -0.4087 1.6616 32 1 6.2743 -0.1374 -0.5947 33 1 7.2521 -2.3624 -0.5948 34 1 6.1275 -2.7697 -1.9129 35 1 7.1105 -0.9694 -3.3069 36 1 8.2347 -0.5626 -1.9883 37 1 8.5147 -3.3097 -2.5801 38 1 11.0490 -3.5719 -3.4587 39 1 9.9244 -3.9792 -4.7770 40 1 14.6430 -2.5933 -8.0234 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:29 Heat of formation + Delta-G solvation = -35.249676 kcal Electronic energy + Delta-G solvation = -22179.933002 eV Core-core repulsion = 18542.585395 eV Total energy + Delta-G solvation = -3637.347607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.120 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -45.24551 -40.62915 -38.65448 -37.20860 -36.01057 -34.57678 -33.86662 -32.36192 -30.80336 -28.90781 -28.05463 -27.53554 -25.60046 -23.70912 -23.16244 -22.45932 -21.73197 -19.85207 -18.58410 -18.31628 -17.79434 -17.41529 -16.99672 -16.87320 -16.51779 -16.26858 -15.94609 -15.68857 -15.22155 -14.84193 -14.67009 -14.38014 -14.19011 -13.80800 -13.71667 -13.55643 -13.41204 -13.16613 -13.15005 -12.96430 -12.91030 -12.83248 -12.63076 -12.57564 -12.40070 -11.88133 -11.70035 -11.15135 -11.00061 -10.53758 -10.25398 -10.13558 -9.65742 -8.66019 -8.33909 -6.12055 0.13703 1.14243 1.28955 1.35375 1.42438 1.48618 1.59219 1.62297 2.20560 2.28650 2.84919 3.00527 3.13541 3.35838 3.50079 3.70489 3.80539 3.91410 4.04761 4.12023 4.18890 4.33245 4.36362 4.42138 4.48408 4.53133 4.56767 4.67278 4.72946 4.75144 4.91087 4.94834 5.05444 5.12930 5.39530 5.43277 5.73233 6.15294 6.21033 6.52105 7.07579 7.26501 7.28490 8.75606 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.041290 B = 0.001721 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.970488 B =16265.845701 C =16427.653767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.166 3.834 3 N -0.336 5.336 4 N -0.309 5.309 5 C 0.174 3.826 6 C 0.189 3.811 7 H 0.134 0.866 8 C -0.173 4.173 9 N -0.691 5.691 10 C 0.066 3.934 11 C 0.123 3.877 12 N -0.708 5.708 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.128 4.128 16 S -0.157 6.157 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.275 1.275 25 O -0.230 6.230 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.358 0.642 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.420 0.580 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.603 -4.679 21.540 34.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 N -0.182 5.182 4 N -0.154 5.154 5 C -0.039 4.039 6 C 0.077 3.923 7 H 0.151 0.849 8 C -0.232 4.232 9 N -0.325 5.325 10 C -0.062 4.062 11 C -0.002 4.002 12 N -0.363 5.363 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.279 4.279 16 S 0.070 5.930 17 C -0.693 4.693 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.200 1.200 25 O -0.110 6.110 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.179 0.821 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.257 0.743 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.431 -1.525 20.196 33.298 hybrid contribution 0.835 -2.945 0.697 3.139 sum -25.595 -4.469 20.892 33.341 Atomic orbital electron populations 1.20704 0.76651 1.07188 1.06962 1.29053 0.99406 0.78863 0.97237 1.74358 0.96631 1.27330 1.19886 1.74252 1.12537 1.10670 1.17966 1.28446 0.85811 0.91428 0.98217 1.19892 0.83077 0.95943 0.93382 0.84854 1.22475 1.02661 1.03795 0.94306 1.59850 1.20825 1.10739 1.41117 1.22043 0.92988 0.93803 0.97374 1.21167 0.90612 0.90584 0.97821 1.45523 1.32460 1.14667 1.43695 1.20093 0.81011 0.88434 0.78623 1.90709 1.72255 1.23930 1.57743 1.23365 1.00007 1.00928 1.03601 1.85654 1.36699 1.18460 1.52210 1.23249 1.19222 0.96671 1.30111 0.89702 1.26146 0.97918 1.00514 0.94681 1.70198 1.30233 1.26849 1.27602 0.84887 0.77424 0.77307 0.78203 1.17859 1.20056 1.20000 1.84773 1.17443 1.38665 1.70095 0.86166 0.86678 0.86784 0.90508 0.88270 0.92104 0.82136 0.90861 0.88342 0.92806 0.92407 0.74285 0.86856 0.86982 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.17 2.71 8.48 88.34 0.75 3.46 16 3 N -0.34 -8.05 12.22 -165.49 -2.02 -10.08 16 4 N -0.31 -7.65 12.22 -165.51 -2.02 -9.68 16 5 C 0.17 3.23 7.32 88.34 0.65 3.88 16 6 C 0.19 2.11 3.13 44.17 0.14 2.24 16 7 H 0.13 0.88 7.80 -2.39 -0.02 0.86 16 8 C -0.17 -1.31 9.14 71.98 0.66 -0.65 16 9 N -0.69 -9.66 6.23 -495.44 -3.09 -12.75 16 10 C 0.07 0.73 5.60 86.30 0.48 1.21 16 11 C 0.12 2.52 5.93 86.38 0.51 3.03 16 12 N -0.71 -16.06 5.56 -463.06 -2.57 -18.63 16 13 C 0.53 19.13 7.85 87.66 0.69 19.82 16 14 O -0.57 -26.56 15.86 -3.02 -0.05 -26.61 16 15 C -0.13 -4.89 6.16 71.24 0.44 -4.46 16 16 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 17 C -0.54 -30.87 9.50 67.95 0.65 -30.23 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.68 5.49 84.86 0.47 1.15 16 20 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 21 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 O -0.23 -3.95 10.87 -3.63 -0.04 -3.99 16 26 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 27 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.11 0.06 8.14 -2.38 -0.02 0.05 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.38 7.45 -2.39 -0.02 0.36 16 31 H 0.06 0.64 8.13 -2.39 -0.02 0.63 16 32 H 0.36 5.31 8.47 -89.69 -0.76 4.55 16 33 H 0.07 0.45 7.44 -2.39 -0.02 0.44 16 34 H 0.10 0.85 8.05 -2.39 -0.02 0.83 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.42 5.95 8.47 -92.71 -0.79 5.17 16 38 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -87.44 363.81 -2.93 -90.38 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -0.47 Total: 11.81 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.17 Total: -0.05 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -9.42 Total: -107.00 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.09 Total: -30.59 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -87.44 -2.93 -90.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.126 kcal (2) G-P(sol) polarization free energy of solvation -87.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds