Wall clock time and date at job start Tue Mar 31 2020 04:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.46767 * 2 1 4 4 C 1.42903 * 113.99818 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47075 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.50564 * 55.08694 * 5 4 3 7 7 C 1.53100 * 109.50381 * 175.21609 * 5 4 3 8 8 N 1.47024 * 109.25427 * 176.78191 * 7 5 4 9 9 C 1.46896 * 110.99604 * 177.61018 * 8 7 5 10 10 C 1.52999 * 109.46952 * 189.68327 * 9 8 7 11 11 C 1.50700 * 109.47476 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99805 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00134 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00162 * 359.97438 * 13 11 10 15 15 C 1.46505 * 119.99919 * 179.97438 * 13 11 10 16 16 C 1.50697 * 109.47285 * 89.99620 * 15 13 11 17 17 H 1.08004 * 119.99806 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00174 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47072 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47549 * 120.00057 * 20 18 16 23 23 H 1.48499 * 109.47378 * 240.00262 * 20 18 16 24 24 C 1.47016 * 110.74959 * 301.38569 * 8 7 5 25 25 C 1.53096 * 109.25942 * 58.61828 * 24 8 7 26 26 O 1.43014 * 109.50432 * 294.99822 * 5 4 3 27 27 H 1.08998 * 109.47042 * 299.99389 * 1 2 3 28 28 H 1.08994 * 109.46902 * 59.99598 * 1 2 3 29 29 H 1.09005 * 109.46769 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47042 * 240.00610 * 2 1 3 31 31 H 1.08998 * 109.47389 * 120.00340 * 2 1 3 32 32 H 1.08997 * 109.47212 * 60.00443 * 4 3 2 33 33 H 1.09001 * 109.47249 * 300.00251 * 4 3 2 34 34 H 1.08993 * 109.50999 * 296.71211 * 7 5 4 35 35 H 1.09002 * 109.50770 * 56.80852 * 7 5 4 36 36 H 1.09003 * 109.47320 * 309.67496 * 9 8 7 37 37 H 1.08998 * 109.47449 * 69.68264 * 9 8 7 38 38 H 1.09004 * 109.46902 * 299.99949 * 10 9 8 39 39 H 1.09005 * 109.47452 * 59.99698 * 10 9 8 40 40 H 1.09002 * 109.46841 * 90.00252 * 14 13 11 41 41 H 1.09008 * 109.47264 * 210.00052 * 14 13 11 42 42 H 1.08998 * 109.47224 * 330.00676 * 14 13 11 43 43 H 1.09007 * 109.47018 * 209.99608 * 15 13 11 44 44 H 1.08998 * 109.46878 * 329.99493 * 15 13 11 45 45 H 0.97003 * 120.00663 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.50851 * 298.67504 * 24 8 7 47 47 H 1.09004 * 109.50278 * 178.55268 * 24 8 7 48 48 H 1.09001 * 109.50680 * 63.08252 * 25 24 8 49 49 H 1.09007 * 109.50443 * 183.16669 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9385 0.0001 6 1 3.3514 3.4412 0.8431 7 6 5.3467 3.0615 0.1198 8 7 5.7260 4.4799 0.0424 9 6 7.1757 4.6469 0.2102 10 6 7.5031 6.1334 0.3657 11 6 8.9905 6.3049 0.5372 12 8 9.7170 5.3339 0.5358 13 7 9.5131 7.5373 0.6933 14 6 8.6354 8.7103 0.6956 15 6 10.9590 7.7040 0.8606 16 6 11.6045 7.8759 -0.4902 17 1 10.9983 7.8628 -1.3840 18 6 12.9688 8.0510 -0.5851 19 7 13.7069 8.0676 0.5033 20 14 13.7689 8.2648 -2.2594 21 1 12.7273 8.2093 -3.3165 22 1 14.4593 9.5785 -2.3141 23 1 14.7560 7.1773 -2.4789 24 6 5.2703 5.0725 -1.2235 25 6 3.7498 4.9292 -1.3297 26 8 3.3975 3.5474 -1.2211 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8935 -0.5139 0.8899 32 1 3.8333 0.9768 -0.8908 33 1 3.8341 0.9764 0.8891 34 1 5.6711 2.6497 1.0754 35 1 5.8214 2.5123 -0.6932 36 1 7.5031 4.1079 1.0993 37 1 7.6908 4.2510 -0.6650 38 1 7.1757 6.6724 -0.5233 39 1 6.9880 6.5293 1.2410 40 1 8.3095 8.9182 1.7148 41 1 9.1783 9.5712 0.3051 42 1 7.7654 8.5144 0.0689 43 1 11.1548 8.5852 1.4717 44 1 11.3719 6.8226 1.3511 45 1 14.6667 8.1911 0.4367 46 1 5.7438 4.5561 -2.0585 47 1 5.5390 6.1286 -1.2484 48 1 3.2742 5.4904 -0.5253 49 1 3.4140 5.3167 -2.2917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599616607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:27 Heat of formation + Delta-G solvation = -123.540692 kcal Electronic energy + Delta-G solvation = -26491.732685 eV Core-core repulsion = 22647.177060 eV Total energy + Delta-G solvation = -3844.555626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05602 -38.97329 -38.08810 -36.07029 -34.78919 -32.92776 -32.65300 -31.29418 -30.93256 -28.35808 -27.51447 -25.90185 -25.16851 -23.85016 -23.10481 -22.78815 -21.33977 -20.52059 -18.36778 -17.14830 -16.97261 -16.83571 -16.55337 -15.93900 -15.78285 -15.56810 -15.38846 -15.27552 -14.81292 -14.52639 -14.14715 -13.86761 -13.71556 -13.52686 -13.21314 -12.87031 -12.46449 -12.28787 -12.20257 -12.08980 -12.04262 -11.81224 -11.79058 -11.63887 -11.51452 -11.25418 -11.16718 -10.93301 -10.80599 -10.63439 -10.55567 -10.17324 -9.93473 -9.80044 -9.62017 -8.91208 -8.54687 -8.45201 -7.64622 -6.05624 -4.10423 3.13294 3.28234 3.35273 3.38323 3.44486 3.46950 3.66636 4.10909 4.43934 4.63125 4.65135 4.69289 4.77425 4.81664 4.88926 4.97490 5.01788 5.03791 5.14466 5.16953 5.20230 5.27957 5.31182 5.31850 5.36408 5.40562 5.55091 5.57565 5.63876 5.65900 5.75322 5.78107 5.84544 5.91585 6.03269 6.06250 6.21288 6.77267 6.81004 6.86117 7.00264 7.05500 7.43701 7.53591 7.90853 8.22390 8.41580 8.89133 9.08877 9.54765 11.02440 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.028854 B = 0.002100 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.182500 B =13332.846467 C =13399.687587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.071 3.929 5 C 0.098 3.902 6 H 0.076 0.924 7 C 0.027 3.973 8 N -0.537 5.537 9 C 0.073 3.927 10 C -0.135 4.135 11 C 0.504 3.496 12 O -0.546 6.546 13 N -0.603 5.603 14 C 0.084 3.916 15 C 0.244 3.756 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.010 3.990 25 C 0.065 3.935 26 O -0.375 6.375 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.263 0.737 46 H 0.045 0.955 47 H 0.091 0.909 48 H 0.060 0.940 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.982 -10.045 -0.220 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.006 4.006 5 C 0.039 3.961 6 H 0.094 0.906 7 C -0.102 4.102 8 N -0.262 5.262 9 C -0.055 4.055 10 C -0.175 4.175 11 C 0.291 3.709 12 O -0.424 6.424 13 N -0.335 5.335 14 C -0.060 4.060 15 C 0.125 3.875 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.118 4.118 25 C -0.012 4.012 26 O -0.294 6.294 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.844 -10.209 0.091 26.860 hybrid contribution 1.367 -0.170 -1.400 1.964 sum -23.477 -10.379 -1.310 25.702 Atomic orbital electron populations 1.21734 0.93695 1.02150 1.03233 1.22467 0.95710 0.83848 1.00016 1.87940 1.20423 1.26214 1.95407 1.22439 0.82064 0.95045 1.01034 1.22075 0.92853 0.92589 0.88534 0.90631 1.22642 0.95255 0.89691 1.02585 1.62186 1.15524 1.14513 1.33959 1.21832 0.85064 0.96136 1.02459 1.21638 0.94614 0.97422 1.03850 1.20273 0.89479 0.83575 0.77622 1.90664 1.62119 1.38710 1.50936 1.48159 1.10154 1.04920 1.70258 1.21636 0.94208 0.89933 1.00235 1.19293 0.73028 0.97997 0.97203 1.21470 0.92441 1.49624 0.92907 0.92474 1.24944 0.97113 0.95228 0.96906 1.69942 1.05931 1.50004 1.27476 0.86442 0.79341 0.77639 0.83987 1.19847 1.20936 1.20872 1.22905 0.96596 1.01390 0.90883 1.22663 0.93322 0.82772 1.02404 1.88030 1.79011 1.23988 1.38327 0.91848 0.91770 0.91166 0.93409 0.93454 0.92460 0.91620 0.89255 0.93581 0.89714 0.93588 0.89643 0.88784 0.93693 0.90840 0.92463 0.95007 0.93840 0.92768 0.93708 0.89117 0.92195 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.38 -3.98 10.31 -39.95 -0.41 -4.39 16 4 C 0.07 0.65 5.60 37.16 0.21 0.86 16 5 C 0.10 1.01 3.09 -26.68 -0.08 0.93 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 7 C 0.03 0.28 4.93 -3.70 -0.02 0.26 16 8 N -0.54 -6.29 4.73 -234.30 -1.11 -7.40 16 9 C 0.07 1.02 4.25 -3.83 -0.02 1.00 16 10 C -0.13 -1.95 4.18 -27.88 -0.12 -2.07 16 11 C 0.50 10.36 7.67 -10.99 -0.08 10.28 16 12 O -0.55 -13.63 15.56 5.56 0.09 -13.55 16 13 N -0.60 -12.77 2.86 -182.95 -0.52 -13.30 16 14 C 0.08 1.31 10.24 59.85 0.61 1.93 16 15 C 0.24 6.43 5.16 -5.19 -0.03 6.40 16 16 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 17 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.01 0.11 5.43 -3.71 -0.02 0.09 16 25 C 0.07 0.64 7.01 37.21 0.26 0.90 16 26 O -0.37 -4.46 10.43 -39.95 -0.42 -4.88 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 37 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.09 1.10 5.77 -51.93 -0.30 0.80 16 39 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.19 8.07 -51.92 -0.42 0.77 16 42 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 43 H 0.03 0.85 8.07 -51.92 -0.42 0.43 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.88 6.37 -51.93 -0.33 0.55 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -34.51 393.78 -8.70 -43.22 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.91 Total: -3.59 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 0.93 Total: 6.98 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.89 Total: -46.66 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.74 Total: -22.82 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.51 -8.70 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599616607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.324 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds