Wall clock time and date at job start Tue Mar 31 2020 05:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99424 * 2 1 4 4 H 1.48510 * 109.46626 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46894 * 299.99294 * 3 2 1 6 6 H 1.48494 * 109.47261 * 59.99887 * 3 2 1 7 7 C 1.38942 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00437 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99831 * 179.97438 * 9 7 2 11 11 O 1.21284 * 119.99821 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99600 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46769 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72341 * 13 12 10 15 15 O 1.21583 * 119.99943 * 0.28074 * 14 13 12 16 16 C 1.47533 * 119.99975 * 180.27938 * 14 13 12 17 17 C 1.36625 * 126.82635 * 179.71669 * 16 14 13 18 18 C 1.42197 * 103.78564 * 179.90803 * 17 16 14 19 19 C 1.48445 * 126.83623 * 180.12779 * 18 17 16 20 20 C 1.39319 * 120.12413 * 359.97006 * 19 18 17 21 21 C 1.38021 * 119.88076 * 179.70286 * 20 19 18 22 22 C 1.38319 * 120.12095 * 0.59555 * 21 20 19 23 23 C 1.38321 * 120.23723 * 359.68075 * 22 21 20 24 24 C 1.38024 * 120.12162 * 0.02562 * 23 22 21 25 25 N 1.30933 * 106.31568 * 0.35418 * 18 17 16 26 26 O 1.20870 * 111.80299 * 359.76826 * 25 18 17 27 27 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99724 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47210 * 60.00194 * 12 10 9 30 30 H 1.08994 * 109.47121 * 300.00164 * 12 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 32 32 H 1.07997 * 128.10370 * 359.97438 * 17 16 14 33 33 H 1.07997 * 120.05693 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.93976 * 180.32172 * 21 20 19 35 35 H 1.07998 * 119.88620 * 179.69651 * 22 21 20 36 36 H 1.08001 * 119.94425 * 180.02562 * 23 22 21 37 37 H 1.08000 * 120.06215 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8892 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1961 -5.9764 0.0004 14 6 1.7469 -7.2471 0.0064 15 8 0.5515 -7.4693 0.0072 16 6 2.7057 -8.3684 0.0119 17 6 2.4067 -9.7014 0.0236 18 6 3.6801 -10.3343 0.0218 19 6 3.9482 -11.7943 0.0289 20 6 2.8894 -12.6997 0.0391 21 6 3.1445 -14.0561 0.0394 22 6 4.4486 -14.5172 0.0422 23 6 5.5036 -13.6227 0.0379 24 6 5.2599 -12.2642 0.0314 25 7 4.5687 -9.3728 0.0176 26 8 4.0492 -8.2814 0.0121 27 1 -0.4851 0.8400 -0.0004 28 1 0.3535 -2.3906 0.0005 29 1 0.6170 -4.9209 -0.8886 30 1 0.6177 -4.9205 0.8913 31 1 3.1498 -5.7991 0.0000 32 1 1.4316 -10.1657 0.0312 33 1 1.8708 -12.3408 0.0414 34 1 2.3244 -14.7588 0.0420 35 1 4.6438 -15.5794 0.0474 36 1 6.5200 -13.9879 0.0396 37 1 6.0844 -11.5666 0.0277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344126098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:11 Heat of formation + Delta-G solvation = 14.727467 kcal Electronic energy + Delta-G solvation = -23743.518394 eV Core-core repulsion = 19875.175345 eV Total energy + Delta-G solvation = -3868.343049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.17423 -39.73129 -39.48190 -38.20096 -34.97462 -34.51106 -33.81547 -32.39048 -31.43406 -31.31651 -30.67903 -28.04994 -25.00837 -24.49422 -23.88348 -22.52188 -22.22698 -20.23919 -19.76330 -18.83641 -18.06104 -17.95318 -16.98918 -16.55822 -16.02625 -15.82479 -15.40483 -15.32086 -15.04892 -14.58765 -14.21078 -14.01051 -13.95014 -13.82018 -13.66474 -13.40950 -13.40082 -12.31339 -12.10315 -12.03825 -11.76745 -11.66834 -11.37168 -11.17152 -11.16455 -10.46258 -10.42901 -10.32567 -9.99795 -9.68880 -9.37239 -9.08005 -8.91558 -8.70631 -8.14650 -6.55420 -3.97510 0.41883 0.72770 0.98428 2.08590 2.44998 2.92404 3.08172 3.11912 3.21543 3.28589 3.47245 3.58573 3.67739 4.06184 4.14555 4.54587 4.59462 4.67050 4.73787 4.76636 4.85533 4.95726 5.07287 5.12714 5.21163 5.42184 5.59056 5.61573 5.74792 5.82005 5.95764 6.02627 6.07834 6.08716 6.35513 6.50618 7.38268 7.43135 7.83134 7.86787 8.02527 8.39912 9.00670 9.33843 9.81274 10.61321 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.045269 B = 0.001985 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.380542 B =14101.247150 C =14704.444095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.107 0.893 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.594 6.594 12 C 0.107 3.893 13 N -0.687 5.687 14 C 0.601 3.399 15 O -0.519 6.519 16 C -0.067 4.067 17 C -0.146 4.146 18 C 0.048 3.952 19 C -0.020 4.020 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.091 4.091 25 N -0.336 5.336 26 O 0.130 5.870 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.419 0.581 32 H 0.186 0.814 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -25.196 0.076 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.125 0.875 9 N -0.182 5.182 10 C 0.211 3.789 11 O -0.480 6.480 12 C -0.020 4.020 13 N -0.340 5.340 14 C 0.384 3.616 15 O -0.396 6.396 16 C -0.133 4.133 17 C -0.168 4.168 18 C -0.108 4.108 19 C -0.021 4.021 20 C -0.113 4.113 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.110 4.110 25 N -0.034 5.034 26 O 0.053 5.947 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.258 0.742 32 H 0.203 0.797 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.110 -25.081 0.075 25.596 hybrid contribution -0.593 0.760 0.002 0.964 sum 4.516 -24.321 0.078 24.737 Atomic orbital electron populations 1.69617 1.06021 1.28508 1.49211 1.25334 0.95678 0.99986 0.96691 0.85749 0.79722 0.80735 0.77843 1.19083 1.20589 1.20594 1.19796 0.93548 0.81900 1.48196 0.87516 1.41787 1.09503 1.04434 1.62430 1.19643 0.88306 0.84885 0.86054 1.90524 1.13585 1.86662 1.57277 1.21102 0.91597 0.85411 1.03913 1.45619 1.12589 1.04098 1.71726 1.16444 0.85994 0.81091 0.78121 1.90870 1.13798 1.83948 1.50975 1.24186 0.84224 0.96805 1.08111 1.22830 0.99864 0.91112 1.03012 1.21967 0.89412 0.94612 1.04770 1.17674 0.94170 0.87134 1.03145 1.21171 0.98551 0.92899 0.98680 1.21100 0.97141 0.95108 1.00368 1.21312 0.92764 0.99959 0.98827 1.21132 0.99557 0.92776 1.00341 1.21262 0.95816 0.96051 0.97913 1.74015 1.21990 0.90690 1.16682 1.85006 1.17918 1.25469 1.66266 0.91588 0.76991 0.89090 0.89093 0.74177 0.79698 0.85217 0.85307 0.85658 0.85448 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 13.05 55.50 0.72 -22.65 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.24 29.55 -169.99 -5.02 15.21 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.31 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.11 5.29 -10.96 -0.06 -13.17 16 10 C 0.43 9.38 7.85 -10.98 -0.09 9.30 16 11 O -0.59 -14.85 15.24 5.55 0.08 -14.76 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 13 N -0.69 -10.95 5.52 -62.53 -0.35 -11.30 16 14 C 0.60 9.07 7.82 -12.47 -0.10 8.98 16 15 O -0.52 -8.81 16.91 5.29 0.09 -8.72 16 16 C -0.07 -0.90 7.28 -36.38 -0.26 -1.16 16 17 C -0.15 -1.68 10.30 -38.65 -0.40 -2.08 16 18 C 0.05 0.57 7.05 -82.53 -0.58 -0.01 16 19 C -0.02 -0.21 5.88 -104.88 -0.62 -0.82 16 20 C -0.09 -0.76 9.60 -39.26 -0.38 -1.14 16 21 C -0.12 -0.80 10.03 -39.63 -0.40 -1.20 16 22 C -0.11 -0.72 10.04 -39.52 -0.40 -1.11 16 23 C -0.12 -0.89 10.03 -39.63 -0.40 -1.28 16 24 C -0.09 -0.86 9.70 -39.26 -0.38 -1.24 16 25 N -0.34 -4.54 11.78 33.39 0.39 -4.15 16 26 O 0.13 1.78 11.02 15.57 0.17 1.95 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 28 H 0.40 9.06 7.90 -40.82 -0.32 8.74 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.42 6.77 7.26 -40.82 -0.30 6.47 16 32 H 0.19 1.68 7.57 -52.49 -0.40 1.28 16 33 H 0.13 0.84 7.22 -52.49 -0.38 0.46 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.13 1.22 7.89 -52.49 -0.41 0.81 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -30.86 340.37 -6.54 -37.39 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -3.43 Total: 12.73 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -4.27 Total: 2.33 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.71 Total: -51.26 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.35 Total: -21.53 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.86 -6.54 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344126098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.122 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds