Wall clock time and date at job start Tue Mar 31 2020 04:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47362 * 270.00655 * 3 2 1 5 5 H 1.48505 * 109.46829 * 30.00641 * 3 2 1 6 6 H 1.48498 * 109.47111 * 150.00028 * 3 2 1 7 7 C 1.38797 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.46949 * 294.99717 * 15 14 13 17 17 N 1.46499 * 109.47392 * 54.99694 * 15 14 13 18 18 C 1.34776 * 119.99921 * 205.00705 * 17 15 14 19 19 O 1.21343 * 120.00200 * 359.97438 * 18 17 15 20 20 C 1.49456 * 119.99763 * 180.02562 * 18 17 15 21 21 N 1.34776 * 119.99763 * 179.97438 * 20 18 17 22 22 O 1.21343 * 120.00036 * 359.97438 * 20 18 17 23 23 C 1.52997 * 109.47519 * 175.00001 * 15 14 13 24 24 C 1.53003 * 117.50025 * 248.74690 * 23 15 14 25 25 C 1.52997 * 117.50117 * 180.08541 * 23 15 14 26 26 H 0.97000 * 119.99868 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46868 * 59.99725 * 10 9 7 28 28 H 1.09002 * 109.46818 * 299.99575 * 10 9 7 29 29 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 30 30 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 31 31 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 32 32 H 0.97000 * 119.99498 * 24.99864 * 17 15 14 33 33 H 0.96994 * 119.99825 * 359.97438 * 21 20 18 34 34 H 0.96997 * 119.99609 * 180.02562 * 21 20 18 35 35 H 1.09006 * 115.54757 * 34.41089 * 23 15 14 36 36 H 1.09001 * 117.49296 * 359.97438 * 24 23 15 37 37 H 1.08991 * 117.50309 * 145.01577 * 24 23 15 38 38 H 1.08999 * 117.49717 * 214.97918 * 25 23 15 39 39 H 1.08993 * 117.49842 * 359.97328 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3026 0.0001 12 8 0.7911 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7150 0.0063 15 6 3.5025 -8.6985 0.0050 16 1 4.0563 -8.6025 -0.9290 17 7 4.3904 -8.4017 1.1319 18 6 5.6902 -8.7535 1.0764 19 8 6.1250 -9.3165 0.0934 20 6 6.5959 -8.4513 2.2263 21 7 7.8956 -8.8035 2.1710 22 8 6.1610 -7.8887 3.2095 23 6 2.9701 -10.1267 0.1377 24 6 3.2603 -10.8705 1.4428 25 6 3.9940 -11.2633 0.1581 26 1 -0.4850 0.8401 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1244 -3.7313 -0.8906 29 1 3.8010 -6.1834 -0.0006 30 1 1.7258 -7.8722 0.8996 31 1 1.7179 -7.8780 -0.8804 32 1 4.0427 -7.9519 1.9178 33 1 8.2431 -9.2536 1.3852 34 1 8.4833 -8.6077 2.9175 35 1 2.0141 -10.3191 -0.3494 36 1 3.8310 -10.3424 2.2068 37 1 2.4956 -11.5525 1.8142 38 1 3.7115 -12.2037 -0.3152 39 1 5.0469 -10.9937 0.0765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687937607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:29 Heat of formation + Delta-G solvation = -80.116527 kcal Electronic energy + Delta-G solvation = -23524.111224 eV Core-core repulsion = 19787.099382 eV Total energy + Delta-G solvation = -3737.011842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30959 -39.57049 -38.91044 -37.63970 -35.31051 -34.32791 -33.45587 -32.43034 -30.59975 -28.56366 -25.61443 -25.39554 -23.58172 -22.62665 -21.26810 -20.59859 -20.15851 -19.12723 -17.94729 -17.57616 -17.00789 -16.70704 -16.37313 -16.16582 -15.56135 -15.48351 -15.02413 -14.80423 -14.57420 -14.25106 -13.92713 -13.61641 -13.23848 -12.99591 -12.60172 -12.40252 -12.37963 -12.12816 -11.81867 -11.69223 -11.06344 -11.02686 -10.78557 -10.72805 -10.36646 -10.35319 -10.11875 -9.82483 -9.64886 -9.45139 -9.08008 -8.99653 -8.24776 -6.50510 -6.21911 -3.92525 0.95905 2.00903 2.75159 2.95755 3.04123 3.22584 3.26953 3.30942 3.35416 3.50607 3.68847 4.11967 4.20156 4.24240 4.46003 4.60209 4.79798 4.93436 5.07000 5.13243 5.13489 5.35303 5.40323 5.55210 5.58414 5.74284 5.77323 5.86176 5.88321 5.93804 6.03111 6.12819 6.43385 6.48050 6.83334 7.33338 7.56134 7.58705 7.60517 8.35110 8.53875 9.23573 10.85523 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.002799 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.228619 B =10002.429498 C =11192.139096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.741 5.741 14 C 0.116 3.884 15 C 0.164 3.836 16 H 0.105 0.895 17 N -0.692 5.692 18 C 0.508 3.492 19 O -0.513 6.513 20 C 0.511 3.489 21 N -0.822 5.822 22 O -0.515 6.515 23 C -0.168 4.168 24 C -0.176 4.176 25 C -0.181 4.181 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.418 0.582 33 H 0.414 0.586 34 H 0.412 0.588 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.576 -23.077 2.054 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.396 5.396 14 C -0.008 4.008 15 C 0.060 3.940 16 H 0.123 0.877 17 N -0.347 5.347 18 C 0.288 3.712 19 O -0.389 6.389 20 C 0.289 3.711 21 N -0.389 5.389 22 O -0.390 6.390 23 C -0.188 4.188 24 C -0.213 4.213 25 C -0.218 4.218 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.255 0.745 33 H 0.244 0.756 34 H 0.244 0.756 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.234 -23.327 1.895 26.409 hybrid contribution 2.682 1.368 0.315 3.027 sum 14.916 -21.960 2.209 26.638 Atomic orbital electron populations 1.70015 1.05949 1.27468 1.46860 1.24990 0.95029 0.99031 0.94516 0.86166 0.79426 0.81556 0.78344 1.20272 1.20743 1.19687 1.22866 0.94918 0.91651 1.58969 0.90926 1.85382 1.04806 0.96313 1.96723 1.23536 1.06670 0.95282 1.04994 1.20315 0.86457 0.86235 0.75000 1.90713 1.15274 1.85558 1.47265 1.45989 1.10080 1.05191 1.78389 1.21541 0.94771 0.80452 1.04064 1.20921 0.90241 0.92747 0.90116 0.87666 1.45941 1.08205 1.58912 1.21598 1.20085 0.83471 0.79995 0.87607 1.90727 1.75399 1.40125 1.32626 1.20123 0.83915 0.79523 0.87514 1.43522 1.09671 1.61621 1.24068 1.90870 1.75380 1.39930 1.32808 1.22610 1.01239 0.91659 1.03252 1.22980 1.03736 1.03299 0.91291 1.23339 0.99320 0.98378 1.00748 0.92173 0.89158 0.89199 0.76792 0.90457 0.89437 0.74481 0.75565 0.75552 0.86230 0.88964 0.88664 0.88940 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.53 9.59 7.85 -10.98 -0.09 9.51 16 12 O -0.51 -11.27 15.86 5.56 0.09 -11.18 16 13 N -0.74 -9.19 5.39 -60.29 -0.32 -9.52 16 14 C 0.12 1.18 5.22 -4.04 -0.02 1.16 16 15 C 0.16 1.33 2.59 -67.93 -0.18 1.15 16 16 H 0.11 0.91 7.58 -51.93 -0.39 0.52 16 17 N -0.69 -5.59 3.04 -54.24 -0.17 -5.76 16 18 C 0.51 4.38 6.73 -11.58 -0.08 4.30 16 19 O -0.51 -4.99 13.50 5.50 0.07 -4.92 16 20 C 0.51 4.36 8.16 -11.58 -0.09 4.26 16 21 N -0.82 -4.15 8.87 30.91 0.27 -3.87 16 22 O -0.52 -5.99 17.31 5.50 0.10 -5.89 16 23 C -0.17 -1.27 5.70 -90.62 -0.52 -1.78 16 24 C -0.18 -1.33 9.74 -26.69 -0.26 -1.59 16 25 C -0.18 -1.42 9.82 -26.69 -0.26 -1.68 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 28 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 29 H 0.40 4.15 8.13 -40.82 -0.33 3.82 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.42 3.48 8.07 -40.82 -0.33 3.15 16 33 H 0.41 1.48 8.30 -40.82 -0.34 1.14 16 34 H 0.41 1.41 8.93 -40.82 -0.36 1.04 16 35 H 0.12 0.81 8.11 -51.93 -0.42 0.38 16 36 H 0.09 0.75 6.67 -51.93 -0.35 0.40 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 1.04 5.01 -51.93 -0.26 0.78 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -36.02 351.39 -7.11 -43.12 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.87 Total: 6.02 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.08 Total: -0.49 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.52 Total: -44.58 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.26 Total: -21.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.02 -7.11 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687937607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.994 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds