Wall clock time and date at job start Tue Mar 31 2020 04:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86791 * 120.00339 * 2 1 4 4 H 1.48510 * 109.47094 * 240.00193 * 3 2 1 5 5 H 1.48496 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47445 * 120.00149 * 3 2 1 7 7 C 1.39917 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99620 * 148.64440 * 7 2 1 9 9 C 1.41134 * 119.99980 * 328.91925 * 7 2 1 10 10 C 1.40878 * 120.16025 * 321.26056 * 9 7 2 11 11 C 1.36360 * 119.83056 * 179.71788 * 10 9 7 12 12 C 1.39521 * 120.16037 * 0.58092 * 11 10 9 13 13 N 1.39110 * 119.83501 * 179.69697 * 12 11 10 14 14 C 1.34777 * 119.99961 * 32.64548 * 13 12 11 15 15 O 1.21624 * 119.99817 * 353.35617 * 14 13 12 16 16 C 1.47040 * 119.99931 * 173.35558 * 14 13 12 17 17 C 1.31601 * 118.10279 * 278.58043 * 16 14 13 18 18 C 1.50099 * 123.78415 * 179.55671 * 17 16 14 19 19 C 1.53006 * 110.13202 * 17.16981 * 18 17 16 20 20 C 1.53362 * 108.51137 * 310.24321 * 19 18 17 21 21 C 1.50085 * 118.11009 * 98.31366 * 16 14 13 22 22 H 1.09008 * 109.36339 * 76.99068 * 21 16 14 23 23 C 1.50694 * 109.36228 * 317.39678 * 21 16 14 24 24 O 1.20827 * 120.00388 * 277.80061 * 23 21 16 25 25 O 1.34237 * 120.00506 * 97.80442 * 23 21 16 26 26 C 1.39519 * 120.33104 * 359.66846 * 12 11 10 27 27 C 1.36355 * 120.16432 * 0.05100 * 26 12 11 28 28 H 0.97006 * 119.99645 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.08669 * 359.97438 * 10 9 7 30 30 H 1.07989 * 119.91958 * 180.25012 * 11 10 9 31 31 H 0.97002 * 119.99921 * 212.65508 * 13 12 11 32 32 H 1.08004 * 118.10988 * 359.57927 * 17 16 14 33 33 H 1.08997 * 109.35986 * 137.37341 * 18 17 16 34 34 H 1.09002 * 109.36180 * 257.10199 * 18 17 16 35 35 H 1.09001 * 109.63103 * 69.94893 * 19 18 17 36 36 H 1.08998 * 109.62934 * 190.34321 * 19 18 17 37 37 H 1.09005 * 109.63202 * 187.75370 * 20 19 18 38 38 H 1.09004 * 109.63256 * 308.34134 * 20 19 18 39 39 H 0.96698 * 117.00533 * 180.02562 * 25 23 21 40 40 H 1.08001 * 119.91856 * 180.02562 * 26 12 11 41 41 H 1.08001 * 120.08362 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.0966 1.6962 -1.2126 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2118 0.0005 8 1 2.9699 -1.2803 -0.4861 9 6 1.4544 -2.3460 0.6320 10 6 0.7538 -2.2084 1.8465 11 6 0.2164 -3.3080 2.4479 12 6 0.3696 -4.5684 1.8696 13 7 -0.1759 -5.6865 2.4922 14 6 -1.3209 -5.5752 3.1944 15 8 -1.8127 -4.4794 3.3859 16 6 -1.9754 -6.7785 3.7290 17 6 -2.7308 -7.4861 2.9163 18 6 -3.4494 -8.7393 3.3239 19 6 -3.5306 -8.8274 4.8493 20 6 -2.1301 -8.5870 5.4261 21 6 -1.7383 -7.1322 5.1682 22 1 -2.3391 -6.4816 5.8039 23 6 -0.2803 -6.9391 5.4965 24 8 0.5202 -7.8014 5.2219 25 8 0.1292 -5.8090 6.0942 26 6 1.0667 -4.7131 0.6697 27 6 1.6046 -3.6219 0.0539 28 1 -0.4850 0.8401 0.0004 29 1 0.6389 -1.2341 2.2979 30 1 -0.3244 -3.2037 3.3767 31 1 0.2678 -6.5461 2.4210 32 1 -2.8399 -7.1456 1.8972 33 1 -4.4570 -8.7296 2.9083 34 1 -2.9094 -9.6059 2.9421 35 1 -4.2163 -8.0675 5.2240 36 1 -3.8850 -9.8162 5.1406 37 1 -2.1376 -8.7806 6.4988 38 1 -1.4141 -9.2475 4.9369 39 1 1.0740 -5.7305 6.2846 40 1 1.1809 -5.6919 0.2277 41 1 2.1436 -3.7353 -0.8751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000153213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:12 Heat of formation + Delta-G solvation = -99.727118 kcal Electronic energy + Delta-G solvation = -25895.057532 eV Core-core repulsion = 22125.291704 eV Total energy + Delta-G solvation = -3769.765828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98432 -39.59420 -38.14031 -37.04592 -36.11720 -34.40532 -33.01162 -31.72665 -31.56434 -29.57156 -28.96164 -25.58708 -24.88314 -23.34096 -21.61943 -21.51486 -21.18581 -19.93600 -18.42133 -18.16117 -17.43457 -17.27261 -16.69157 -16.32030 -15.74170 -15.20554 -14.93643 -14.51169 -14.37528 -13.91325 -13.56026 -13.49549 -13.28468 -13.00402 -12.85752 -12.67321 -12.56824 -12.13284 -12.02526 -11.68329 -11.60559 -11.49629 -11.15933 -11.11959 -11.00769 -10.92005 -10.62783 -10.54516 -10.04036 -9.95710 -9.39011 -9.21617 -8.96200 -8.69383 -7.58865 -7.04215 -6.70085 -4.27599 1.57673 2.07245 2.48544 2.90164 2.99778 3.04041 3.11692 3.14844 3.31738 3.66163 3.99021 4.36416 4.38297 4.58800 4.62493 4.77125 4.86180 5.06232 5.12453 5.21154 5.28169 5.47953 5.54673 5.57470 5.62313 5.74047 5.96263 6.09890 6.14192 6.32333 6.37518 6.45067 6.70205 6.89861 7.00246 7.14199 7.26039 7.49681 7.63544 7.78420 7.84440 8.06255 8.16733 8.26104 8.58434 8.68839 8.88150 8.98194 10.19646 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.003141 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.163036 B = 8912.390703 C = 9160.229494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.091 3.909 3 Si 0.893 3.107 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.122 3.878 10 C -0.166 4.166 11 C -0.084 4.084 12 C -0.006 4.006 13 N -0.642 5.642 14 C 0.530 3.470 15 O -0.516 6.516 16 C -0.152 4.152 17 C -0.090 4.090 18 C -0.094 4.094 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.029 4.029 22 H 0.116 0.884 23 C 0.485 3.515 24 O -0.510 6.510 25 O -0.506 6.506 26 C -0.104 4.104 27 C -0.203 4.203 28 H 0.282 0.718 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.396 0.604 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.412 0.588 40 H 0.091 0.909 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 -15.792 9.604 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.518 4.518 8 H 0.099 0.901 9 C 0.119 3.881 10 C -0.186 4.186 11 C -0.104 4.104 12 C -0.098 4.098 13 N -0.284 5.284 14 C 0.316 3.684 15 O -0.392 6.392 16 C -0.156 4.156 17 C -0.109 4.109 18 C -0.131 4.131 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.048 4.048 22 H 0.134 0.866 23 C 0.327 3.673 24 O -0.398 6.398 25 O -0.317 6.317 26 C -0.124 4.124 27 C -0.223 4.223 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.230 0.770 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.271 0.729 40 H 0.109 0.891 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.226 -15.132 9.547 18.944 hybrid contribution 1.150 0.604 -0.080 1.301 sum -5.076 -14.528 9.467 18.068 Atomic orbital electron populations 1.69925 1.07941 1.29779 1.32595 1.25786 0.94271 1.00886 0.92003 0.86629 0.80680 0.80926 0.80075 1.19041 1.20487 1.18728 1.19290 1.05143 0.93667 1.33707 0.90073 1.17582 0.88496 0.91996 0.90001 1.20772 1.04757 0.96490 0.96533 1.20647 0.98615 0.91478 0.99614 1.17210 1.09359 0.86308 0.96958 1.43011 1.23097 1.11493 1.50832 1.18460 0.80965 0.88988 0.79991 1.90812 1.64203 1.26941 1.57207 1.20338 1.03482 0.97258 0.94495 1.22655 0.94739 0.94466 0.98994 1.20579 1.00694 0.95591 0.96259 1.21618 0.96306 1.02669 0.95090 1.21600 0.98185 0.92829 1.02066 1.19595 0.89986 1.00323 0.94904 0.86590 1.23259 0.91893 0.78838 0.73358 1.90699 1.55812 1.43394 1.49893 1.84591 1.33934 1.40923 1.72256 1.20126 1.00994 0.97605 0.93658 1.20692 1.08142 0.93094 1.00336 0.90701 0.88440 0.86791 0.76990 0.86202 0.89906 0.89582 0.91014 0.90533 0.90549 0.89664 0.72928 0.89080 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.99 12.87 55.55 0.72 -20.27 16 2 C 0.09 2.34 4.76 -17.33 -0.08 2.26 16 3 Si 0.89 18.95 29.66 -169.99 -5.04 13.91 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.49 -13.14 8.85 -37.85 -0.34 -13.47 16 8 H 0.08 2.09 8.01 -52.49 -0.42 1.67 16 9 C 0.12 3.28 5.35 -106.80 -0.57 2.71 16 10 C -0.17 -4.42 8.86 -39.26 -0.35 -4.77 16 11 C -0.08 -2.09 8.65 -39.78 -0.34 -2.44 16 12 C -0.01 -0.14 6.36 -83.60 -0.53 -0.67 16 13 N -0.64 -11.88 5.30 -10.82 -0.06 -11.94 16 14 C 0.53 9.73 5.86 -12.69 -0.07 9.66 16 15 O -0.52 -11.68 14.29 5.26 0.08 -11.61 16 16 C -0.15 -2.06 5.19 -103.21 -0.54 -2.60 16 17 C -0.09 -1.00 9.50 -36.46 -0.35 -1.34 16 18 C -0.09 -0.71 6.11 -28.17 -0.17 -0.88 16 19 C -0.12 -0.81 6.00 -26.54 -0.16 -0.97 16 20 C -0.11 -0.93 5.15 -26.62 -0.14 -1.06 16 21 C -0.03 -0.33 2.73 -93.30 -0.25 -0.58 16 22 H 0.12 1.27 8.14 -51.92 -0.42 0.85 16 23 C 0.48 6.38 6.39 36.00 0.23 6.61 16 24 O -0.51 -7.52 16.91 -18.75 -0.32 -7.83 16 25 O -0.51 -6.38 13.42 -39.28 -0.53 -6.91 16 26 C -0.10 -2.31 9.89 -39.78 -0.39 -2.70 16 27 C -0.20 -4.97 9.74 -39.26 -0.38 -5.36 16 28 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 29 H 0.10 2.65 7.62 -52.49 -0.40 2.25 16 30 H 0.11 2.87 5.93 -52.49 -0.31 2.56 16 31 H 0.40 6.31 8.79 -40.82 -0.36 5.95 16 32 H 0.12 1.39 7.95 -52.48 -0.42 0.97 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.79 7.50 -51.93 -0.39 0.40 16 39 H 0.41 3.60 9.10 45.56 0.41 4.02 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -33.16 351.31 -8.69 -41.86 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -4.40 Total: 13.12 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -4.44 Total: -15.62 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.66 Total: -32.21 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.77 Total: -26.35 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.04 Total: 13.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.16 -8.69 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000153213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.868 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds