Wall clock time and date at job start Tue Mar 31 2020 04:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48498 * 109.46934 * 240.00077 * 3 2 1 5 5 H 1.48500 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46840 * 120.00104 * 3 2 1 7 7 C 1.37878 * 119.99393 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99317 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00507 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46230 * 180.02562 * 9 7 2 11 11 C 1.53192 * 109.31612 * 178.61468 * 10 9 7 12 12 N 1.46931 * 108.77040 * 54.63475 * 11 10 9 13 13 C 1.34784 * 120.62757 * 126.37050 * 12 11 10 14 14 O 1.21274 * 119.99897 * 359.72693 * 13 12 11 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47004 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.64420 * 305.43580 * 16 15 13 18 18 C 1.53884 * 109.64485 * 65.72735 * 16 15 13 19 19 C 1.55046 * 106.62307 * 167.03805 * 18 16 15 20 20 S 1.83293 * 102.56502 * 317.56283 * 19 18 16 21 21 O 1.42098 * 109.35142 * 269.81752 * 20 19 18 22 22 O 1.42102 * 109.47587 * 136.64988 * 20 19 18 23 23 C 1.54164 * 109.64992 * 184.99890 * 16 15 13 24 24 C 1.46918 * 118.74146 * 306.64550 * 12 11 10 25 25 C 1.52761 * 109.01190 * 53.30689 * 24 12 11 26 26 H 0.97008 * 119.99976 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.45982 * 299.97838 * 9 7 2 28 28 H 1.09002 * 109.49840 * 58.66448 * 10 9 7 29 29 H 1.08997 * 109.49941 * 298.57079 * 10 9 7 30 30 H 1.09000 * 109.58535 * 294.85292 * 11 10 9 31 31 H 1.08997 * 109.59081 * 174.41791 * 11 10 9 32 32 H 1.09005 * 109.47403 * 300.00056 * 15 13 12 33 33 H 1.09002 * 109.47422 * 60.00295 * 15 13 12 34 34 H 1.09006 * 110.02227 * 286.32143 * 18 16 15 35 35 H 1.08999 * 110.02810 * 47.73933 * 18 16 15 36 36 H 1.09004 * 110.78536 * 199.29705 * 19 18 16 37 37 H 1.09002 * 110.79369 * 75.83027 * 19 18 16 38 38 H 1.08998 * 110.31371 * 331.14697 * 23 16 15 39 39 H 1.09003 * 110.31423 * 93.33673 * 23 16 15 40 40 H 1.08998 * 109.59258 * 173.14856 * 24 12 11 41 41 H 1.09000 * 109.58451 * 293.57077 * 24 12 11 42 42 H 1.08997 * 109.56476 * 185.55091 * 25 24 12 43 43 H 1.09005 * 109.38339 * 65.51713 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2455 -3.6622 -0.0005 11 6 1.4765 -4.9867 0.0344 12 7 0.5221 -5.0088 -1.0825 13 6 0.5118 -6.0347 -1.9567 14 8 1.2985 -6.9486 -1.8283 15 6 -0.4736 -6.0431 -3.0967 16 6 -0.2749 -7.3087 -3.9332 17 1 0.7653 -7.3780 -4.2515 18 6 -0.6398 -8.5460 -3.0942 19 6 -0.7378 -9.7379 -4.0809 20 16 -1.6340 -9.0060 -5.5024 21 8 -3.0321 -9.1818 -5.3187 22 8 -1.0215 -9.4239 -6.7147 23 6 -1.1936 -7.2621 -5.1704 24 6 -0.4167 -3.8886 -1.2319 25 6 0.3699 -2.5791 -1.2493 26 1 -0.4850 0.8401 0.0004 27 1 0.6250 -2.5571 0.8899 28 1 2.8881 -3.5914 0.8771 29 1 2.8555 -3.6194 -0.9029 30 1 0.9370 -5.0711 0.9778 31 1 2.1749 -5.8175 -0.0653 32 1 -1.4887 -6.0251 -2.6998 33 1 -0.3127 -5.1654 -3.7227 34 1 0.1372 -8.7373 -2.3539 35 1 -1.5983 -8.3916 -2.5987 36 1 -1.3093 -10.5565 -3.6432 37 1 0.2545 -10.0745 -4.3810 38 1 -2.0894 -6.6798 -4.9547 39 1 -0.6610 -6.8375 -6.0214 40 1 -0.9670 -3.9951 -2.1667 41 1 -1.1137 -3.8817 -0.3939 42 1 -0.3226 -1.7375 -1.2606 43 1 0.9974 -2.5459 -2.1400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701307708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:33 Heat of formation + Delta-G solvation = -121.250481 kcal Electronic energy + Delta-G solvation = -24793.130493 eV Core-core repulsion = 21157.875292 eV Total energy + Delta-G solvation = -3635.255200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07224 -37.61966 -37.25419 -36.41604 -36.16421 -33.62582 -31.83483 -30.91771 -30.22124 -28.53104 -26.22787 -24.53852 -23.01308 -22.41686 -21.12981 -19.84230 -19.11360 -18.37964 -17.39154 -16.84905 -16.65604 -16.19456 -15.87420 -15.55945 -15.30949 -14.63197 -14.38617 -14.30887 -13.89080 -13.41783 -13.27720 -13.09169 -12.73521 -12.69805 -12.42617 -12.40508 -12.29214 -12.24950 -11.95924 -11.72328 -11.55853 -11.37837 -11.11262 -10.98506 -10.82783 -10.73446 -10.57236 -10.46903 -10.18411 -9.75002 -9.47277 -9.26255 -9.02111 -8.45703 -8.12243 -6.10803 -4.17032 -0.20328 2.25779 2.82020 3.24563 3.26343 3.29740 3.32643 3.38581 3.72173 4.08513 4.30750 4.34278 4.34810 4.51684 4.63700 4.84033 5.00746 5.10052 5.18668 5.22733 5.37050 5.44411 5.48674 5.60496 5.71003 5.83917 5.84543 5.93204 5.98318 6.05949 6.19654 6.35002 6.55667 6.78646 6.93562 7.03233 7.16968 7.57600 7.80296 7.82607 7.94971 8.31879 8.40566 8.86155 9.48531 10.94721 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.002708 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.044125 B =10339.140886 C =10811.494519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.111 3.889 12 N -0.598 5.598 13 C 0.510 3.490 14 O -0.559 6.559 15 C -0.133 4.133 16 C -0.065 4.065 17 H 0.102 0.898 18 C -0.121 4.121 19 C -0.582 4.582 20 S 2.384 3.616 21 O -0.941 6.941 22 O -0.944 6.944 23 C -0.591 4.591 24 C 0.101 3.899 25 C -0.126 4.126 26 H 0.261 0.739 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -14.512 -6.905 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.330 5.330 13 C 0.298 3.702 14 O -0.439 6.439 15 C -0.174 4.174 16 C -0.085 4.085 17 H 0.120 0.880 18 C -0.160 4.160 19 C -0.712 4.712 20 S 2.569 3.431 21 O -0.938 6.938 22 O -0.941 6.941 23 C -0.721 4.721 24 C -0.021 4.021 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.379 -15.263 -7.563 17.588 hybrid contribution 0.867 1.571 0.609 1.895 sum -3.512 -13.692 -6.954 15.753 Atomic orbital electron populations 1.69816 1.05853 1.26661 1.50776 1.24955 0.94885 0.99082 0.94995 0.86667 0.79640 0.83107 0.78652 1.20322 1.21277 1.20290 1.21163 0.92928 0.90571 1.50523 0.92760 1.18620 0.92628 0.91752 0.93930 1.22008 0.98934 0.94220 1.01014 1.21710 0.91764 0.99756 0.87880 1.48274 1.36031 1.20861 1.27822 1.20454 0.84685 0.81941 0.83142 1.90609 1.41731 1.36470 1.75117 1.21760 1.00315 0.99049 0.96258 1.21313 1.00432 0.95051 0.91734 0.87983 1.22441 1.05321 0.89621 0.98595 1.30584 1.14801 1.08438 1.17406 1.09162 0.76420 0.79953 0.77584 1.93616 1.28623 1.84743 1.86820 1.93607 1.78338 1.80134 1.42027 1.30624 1.10292 1.23782 1.07393 1.21998 0.91739 0.87558 1.00792 1.21959 1.00157 0.94636 0.99667 0.92868 0.95462 0.92128 0.92980 0.92188 0.90290 0.88368 0.87929 0.86472 0.89865 0.84611 0.84452 0.84190 0.84127 0.91365 0.91791 0.87653 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 11.31 55.43 0.63 -22.98 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.20 8.56 -34.44 -0.29 -13.49 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 10 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 11 C 0.11 1.86 6.44 -3.71 -0.02 1.84 16 12 N -0.60 -9.47 2.98 -173.04 -0.52 -9.98 16 13 C 0.51 7.34 7.46 -10.98 -0.08 7.25 16 14 O -0.56 -9.21 13.55 5.56 0.08 -9.13 16 15 C -0.13 -1.35 3.38 -27.88 -0.09 -1.44 16 16 C -0.07 -0.56 2.24 -89.55 -0.20 -0.76 16 17 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 18 C -0.12 -1.01 5.33 -25.19 -0.13 -1.15 16 19 C -0.58 -3.92 7.31 38.24 0.28 -3.64 16 20 S 2.38 19.82 6.10 -107.50 -0.66 19.16 16 21 O -0.94 -11.02 18.15 -57.73 -1.05 -12.07 16 22 O -0.94 -11.20 18.15 -57.73 -1.05 -12.25 16 23 C -0.59 -3.95 6.75 37.77 0.25 -3.69 16 24 C 0.10 1.60 6.31 -3.94 -0.02 1.58 16 25 C -0.13 -2.57 5.14 -26.83 -0.14 -2.71 16 26 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 32 H 0.10 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.10 0.96 7.68 -51.93 -0.40 0.56 16 34 H 0.12 1.20 6.45 -51.93 -0.34 0.87 16 35 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 36 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.14 0.75 7.89 -51.93 -0.41 0.34 16 39 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.11 2.43 6.03 -51.93 -0.31 2.11 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.08 346.94 -9.96 -43.04 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.72 Total: 0.04 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.88 Total: -16.31 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.11 Total: -32.96 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -2.02 Total: -33.46 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 19.82 SS G_CDS: -0.66 Total: 19.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.08 -9.96 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701307708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.214 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds