Wall clock time and date at job start Tue Mar 31 2020 04:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48498 * 109.46934 * 240.00077 * 3 2 1 5 5 H 1.48500 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46840 * 120.00104 * 3 2 1 7 7 C 1.37878 * 119.99393 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99317 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00507 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46230 * 180.02562 * 9 7 2 11 11 C 1.53192 * 109.31612 * 178.61468 * 10 9 7 12 12 N 1.46931 * 108.77040 * 54.63475 * 11 10 9 13 13 C 1.34784 * 120.62757 * 126.37050 * 12 11 10 14 14 O 1.21274 * 119.99897 * 359.72693 * 13 12 11 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47004 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.64420 * 305.43580 * 16 15 13 18 18 C 1.53884 * 109.64485 * 65.72735 * 16 15 13 19 19 C 1.55046 * 106.62307 * 167.03805 * 18 16 15 20 20 S 1.83293 * 102.56502 * 317.56283 * 19 18 16 21 21 O 1.42098 * 109.35142 * 269.81752 * 20 19 18 22 22 O 1.42102 * 109.47587 * 136.64988 * 20 19 18 23 23 C 1.54164 * 109.64992 * 184.99890 * 16 15 13 24 24 C 1.46918 * 118.74146 * 306.64550 * 12 11 10 25 25 C 1.52761 * 109.01190 * 53.30689 * 24 12 11 26 26 H 0.97008 * 119.99976 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.45982 * 299.97838 * 9 7 2 28 28 H 1.09002 * 109.49840 * 58.66448 * 10 9 7 29 29 H 1.08997 * 109.49941 * 298.57079 * 10 9 7 30 30 H 1.09000 * 109.58535 * 294.85292 * 11 10 9 31 31 H 1.08997 * 109.59081 * 174.41791 * 11 10 9 32 32 H 1.09005 * 109.47403 * 300.00056 * 15 13 12 33 33 H 1.09002 * 109.47422 * 60.00295 * 15 13 12 34 34 H 1.09006 * 110.02227 * 286.32143 * 18 16 15 35 35 H 1.08999 * 110.02810 * 47.73933 * 18 16 15 36 36 H 1.09004 * 110.78536 * 199.29705 * 19 18 16 37 37 H 1.09002 * 110.79369 * 75.83027 * 19 18 16 38 38 H 1.08998 * 110.31371 * 331.14697 * 23 16 15 39 39 H 1.09003 * 110.31423 * 93.33673 * 23 16 15 40 40 H 1.08998 * 109.59258 * 173.14856 * 24 12 11 41 41 H 1.09000 * 109.58451 * 293.57077 * 24 12 11 42 42 H 1.08997 * 109.56476 * 185.55091 * 25 24 12 43 43 H 1.09005 * 109.38339 * 65.51713 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2455 -3.6622 -0.0005 11 6 1.4765 -4.9867 0.0344 12 7 0.5221 -5.0088 -1.0825 13 6 0.5118 -6.0347 -1.9567 14 8 1.2985 -6.9486 -1.8283 15 6 -0.4736 -6.0431 -3.0967 16 6 -0.2749 -7.3087 -3.9332 17 1 0.7653 -7.3780 -4.2515 18 6 -0.6398 -8.5460 -3.0942 19 6 -0.7378 -9.7379 -4.0809 20 16 -1.6340 -9.0060 -5.5024 21 8 -3.0321 -9.1818 -5.3187 22 8 -1.0215 -9.4239 -6.7147 23 6 -1.1936 -7.2621 -5.1704 24 6 -0.4167 -3.8886 -1.2319 25 6 0.3699 -2.5791 -1.2493 26 1 -0.4850 0.8401 0.0004 27 1 0.6250 -2.5571 0.8899 28 1 2.8881 -3.5914 0.8771 29 1 2.8555 -3.6194 -0.9029 30 1 0.9370 -5.0711 0.9778 31 1 2.1749 -5.8175 -0.0653 32 1 -1.4887 -6.0251 -2.6998 33 1 -0.3127 -5.1654 -3.7227 34 1 0.1372 -8.7373 -2.3539 35 1 -1.5983 -8.3916 -2.5987 36 1 -1.3093 -10.5565 -3.6432 37 1 0.2545 -10.0745 -4.3810 38 1 -2.0894 -6.6798 -4.9547 39 1 -0.6610 -6.8375 -6.0214 40 1 -0.9670 -3.9951 -2.1667 41 1 -1.1137 -3.8817 -0.3939 42 1 -0.3226 -1.7375 -1.2606 43 1 0.9974 -2.5459 -2.1400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701307708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:32 Heat of formation + Delta-G solvation = -143.782135 kcal Electronic energy + Delta-G solvation = -24794.107538 eV Core-core repulsion = 21157.875292 eV Total energy + Delta-G solvation = -3636.232246 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22093 -38.77865 -38.04415 -37.38943 -36.96474 -35.29914 -33.25304 -32.02419 -31.49338 -29.37851 -27.83718 -25.39280 -24.45721 -23.81746 -22.06533 -21.12544 -19.83342 -19.60460 -18.61067 -18.06977 -17.54645 -17.42599 -16.67837 -16.57212 -16.44457 -16.35126 -15.32503 -14.99252 -14.86849 -14.78550 -14.58417 -14.48581 -14.02767 -13.97513 -13.37400 -13.28466 -13.18334 -13.06814 -13.05572 -12.90825 -12.79568 -12.64718 -12.48142 -12.28112 -12.11872 -11.91848 -11.74598 -11.51725 -11.46057 -11.24664 -10.99178 -10.86356 -10.54271 -10.36382 -9.47892 -8.07650 -6.20414 -0.83577 1.42497 1.43838 1.50490 1.64529 1.71804 2.17332 2.44253 2.70216 3.09640 3.19079 3.38826 3.60846 3.70786 3.89841 3.95090 4.08552 4.18440 4.30645 4.36432 4.44769 4.49070 4.54142 4.60690 4.69973 4.74231 4.82906 4.87378 4.92197 4.92995 5.02439 5.18791 5.22883 5.27644 5.28798 5.46306 5.58460 5.67394 6.00923 6.17149 6.40869 6.60394 6.89035 7.25892 7.47272 8.95225 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.002708 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.044125 B =10339.140886 C =10811.494519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.044 0.956 9 C 0.045 3.955 10 C -0.114 4.114 11 C 0.117 3.883 12 N -0.606 5.606 13 C 0.507 3.493 14 O -0.581 6.581 15 C -0.133 4.133 16 C -0.067 4.067 17 H 0.096 0.904 18 C -0.126 4.126 19 C -0.568 4.568 20 S 2.393 3.607 21 O -0.978 6.978 22 O -0.985 6.985 23 C -0.573 4.573 24 C 0.113 3.887 25 C -0.118 4.118 26 H 0.262 0.738 27 H 0.002 0.998 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 -14.867 -7.553 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.005 4.005 12 N -0.338 5.338 13 C 0.297 3.703 14 O -0.462 6.462 15 C -0.173 4.173 16 C -0.087 4.087 17 H 0.114 0.886 18 C -0.164 4.164 19 C -0.700 4.700 20 S 2.582 3.418 21 O -0.975 6.975 22 O -0.982 6.982 23 C -0.704 4.704 24 C -0.009 4.009 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.995 -15.646 -8.239 18.374 hybrid contribution 1.133 1.690 0.880 2.216 sum -3.862 -13.956 -7.358 16.243 Atomic orbital electron populations 1.69926 1.06679 1.27169 1.51144 1.25588 0.95689 1.01758 0.94899 0.85813 0.78586 0.79891 0.78534 1.20050 1.20833 1.20190 1.21531 0.92833 0.92439 1.50680 0.93719 1.18598 0.93067 0.91742 0.93910 1.21847 0.98323 0.94674 1.00386 1.21528 0.92061 0.97934 0.89011 1.48314 1.35968 1.21458 1.28039 1.21214 0.84901 0.80843 0.83327 1.90608 1.42838 1.37151 1.75596 1.21890 1.00265 1.00304 0.94846 1.21317 1.00675 0.94563 0.92190 0.88561 1.22461 1.05433 0.90059 0.98475 1.30496 1.15237 1.08488 1.15744 1.08696 0.75337 0.80630 0.77118 1.93566 1.30965 1.85690 1.87268 1.93553 1.78694 1.81374 1.44579 1.30491 1.10931 1.21935 1.07078 1.21854 0.91014 0.85066 1.03010 1.21722 0.99447 0.96590 0.97888 0.92911 0.98013 0.92306 0.94045 0.91521 0.90033 0.85660 0.86432 0.88278 0.88438 0.83029 0.83475 0.82044 0.82464 0.87390 0.91644 0.90281 0.95242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.52 11.31 21.45 0.24 -48.28 16 2 C 0.02 1.04 5.30 84.65 0.45 1.49 16 3 Si 0.95 41.70 29.54 68.60 2.03 43.72 16 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.54 -28.05 8.56 25.60 0.22 -27.83 16 8 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 9 C 0.05 2.07 2.07 -11.52 -0.02 2.05 16 10 C -0.11 -4.42 5.30 30.67 0.16 -4.26 16 11 C 0.12 3.84 6.44 86.36 0.56 4.39 16 12 N -0.61 -17.97 2.98 -819.75 -2.44 -20.41 16 13 C 0.51 13.28 7.46 87.65 0.65 13.94 16 14 O -0.58 -18.08 13.55 -3.01 -0.04 -18.12 16 15 C -0.13 -2.16 3.38 29.85 0.10 -2.06 16 16 C -0.07 -0.95 2.24 -10.10 -0.02 -0.97 16 17 H 0.10 1.50 7.94 -2.39 -0.02 1.48 16 18 C -0.13 -1.76 5.33 31.59 0.17 -1.59 16 19 C -0.57 -6.38 7.31 72.68 0.53 -5.85 16 20 S 2.39 35.67 6.10 -56.49 -0.34 35.32 16 21 O -0.98 -21.58 18.15 -127.47 -2.31 -23.89 16 22 O -0.98 -22.56 18.15 -127.47 -2.31 -24.87 16 23 C -0.57 -5.70 6.75 72.38 0.49 -5.21 16 24 C 0.11 3.32 6.31 86.22 0.54 3.86 16 25 C -0.12 -4.77 5.14 30.53 0.16 -4.62 16 26 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 27 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 2.64 7.00 -2.39 -0.02 2.62 16 32 H 0.13 1.42 7.93 -2.38 -0.02 1.40 16 33 H 0.12 1.65 7.68 -2.39 -0.02 1.63 16 34 H 0.10 1.84 6.45 -2.38 -0.02 1.83 16 35 H 0.10 1.08 8.09 -2.39 -0.02 1.06 16 36 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.16 1.01 7.89 -2.39 -0.02 0.99 16 39 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 2.33 5.94 -2.39 -0.01 2.31 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 3.65 6.03 -2.39 -0.01 3.64 16 43 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -72.33 346.94 -0.20 -72.53 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.00 Total: 10.67 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.98 Total: -26.67 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.20 Total: -68.69 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -4.67 Total: -66.89 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 35.67 SS G_CDS: -0.34 Total: 35.32 kcal Total: -72.33 -0.20 -72.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701307708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.249 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds