Wall clock time and date at job start Tue Mar 31 2020 04:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48502 * 109.46994 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47621 * 119.99829 * 3 2 1 6 6 H 1.48501 * 109.47038 * 239.99903 * 3 2 1 7 7 C 1.37872 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00575 * 193.54168 * 7 2 1 9 9 C 1.50703 * 119.99960 * 13.53849 * 7 2 1 10 10 O 1.42908 * 112.94246 * 53.32537 * 9 7 2 11 11 C 1.53937 * 113.74568 * 281.58640 * 9 7 2 12 12 N 1.47579 * 86.12249 * 222.04474 * 11 9 7 13 13 C 1.34772 * 134.49680 * 204.64079 * 12 11 9 14 14 O 1.21572 * 120.00095 * 180.95730 * 13 12 11 15 15 C 1.47733 * 120.00126 * 0.95717 * 13 12 11 16 16 C 1.39692 * 120.02545 * 351.81784 * 15 13 12 17 17 C 1.37688 * 119.97264 * 179.69592 * 16 15 13 18 18 C 1.39465 * 120.02268 * 0.60267 * 17 16 15 19 19 C 1.48366 * 119.96978 * 179.70107 * 18 17 16 20 20 N 1.34087 * 126.68081 * 180.02562 * 19 18 17 21 21 N 1.28977 * 107.26290 * 179.97438 * 20 19 18 22 22 N 1.28724 * 108.96070 * 359.97438 * 21 20 19 23 23 H 0.97002 * 125.33963 * 179.97438 * 22 21 20 24 24 N 1.28867 * 109.32798 * 359.73151 * 22 21 20 25 25 C 1.39462 * 120.05888 * 359.66967 * 18 17 16 26 26 C 1.37682 * 120.02396 * 0.02687 * 25 18 17 27 27 C 1.47584 * 91.01010 * 24.64176 * 12 11 9 28 28 H 0.97000 * 120.00250 * 185.75871 * 1 2 3 29 29 H 0.96705 * 113.99372 * 303.41984 * 10 9 7 30 30 H 1.08999 * 113.77352 * 336.35189 * 11 9 7 31 31 H 1.09002 * 113.76847 * 107.74505 * 11 9 7 32 32 H 1.08006 * 120.01723 * 359.97044 * 16 15 13 33 33 H 1.07995 * 119.98827 * 180.29264 * 17 16 15 34 34 H 1.07993 * 119.98775 * 180.02562 * 25 18 17 35 35 H 1.08004 * 120.01093 * 180.02562 * 26 25 18 36 36 H 1.08998 * 113.76858 * 221.05929 * 27 12 11 37 37 H 1.08994 * 113.77196 * 89.66154 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0620 -1.2070 0.2195 9 6 1.2824 -2.4811 -0.3044 10 8 0.5582 -2.4354 -1.5356 11 6 0.4638 -3.0281 0.8790 12 7 0.9851 -4.3547 0.4966 13 6 0.5594 -5.6220 0.6673 14 8 1.2242 -6.5486 0.2461 15 6 -0.7152 -5.8852 1.3664 16 6 -1.3940 -4.8410 1.9992 17 6 -2.5850 -5.0864 2.6450 18 6 -3.1073 -6.3791 2.6784 19 6 -4.3874 -6.6434 3.3804 20 7 -5.0081 -7.8263 3.4960 21 7 -6.0854 -7.6283 4.1770 22 7 -6.1603 -6.3814 4.4881 23 1 -6.8762 -5.9728 4.9994 24 7 -5.1326 -5.7621 4.0180 25 6 -2.4277 -7.4235 2.0519 26 6 -1.2398 -7.1795 1.4001 27 6 2.1599 -3.7363 -0.1479 28 1 -0.4850 -0.8358 0.0843 29 1 -0.0867 -1.7165 -1.5860 30 1 0.8132 -2.6825 1.8519 31 1 -0.6140 -2.9263 0.7520 32 1 -0.9870 -3.8408 1.9780 33 1 -3.1123 -4.2785 3.1303 34 1 -2.8334 -8.4240 2.0781 35 1 -0.7139 -7.9883 0.9146 36 1 2.4364 -4.1999 -1.0948 37 1 3.0076 -3.5987 0.5232 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606346607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:47 Heat of formation + Delta-G solvation = 113.698858 kcal Electronic energy + Delta-G solvation = -25084.382687 eV Core-core repulsion = 21252.624112 eV Total energy + Delta-G solvation = -3831.758576 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.71125 -40.26921 -38.85963 -37.40510 -34.66453 -34.41498 -33.80336 -32.44405 -31.34895 -30.87176 -28.54779 -25.87925 -25.59052 -24.89693 -24.44596 -22.45166 -22.08122 -20.42803 -19.48720 -19.05397 -18.16356 -17.39795 -16.89786 -16.76269 -15.94998 -15.22015 -14.91478 -14.69899 -14.38074 -14.14592 -13.96352 -13.84308 -13.51289 -13.15996 -12.94455 -12.65899 -12.58028 -12.28944 -12.06163 -11.66232 -11.62833 -11.45226 -11.22095 -11.10339 -11.01365 -10.95619 -10.58432 -10.25744 -9.69841 -9.36067 -9.10295 -8.89027 -8.82715 -8.47146 -7.98413 -6.74269 -4.54103 0.31619 0.89190 1.29625 1.96645 1.98213 3.13022 3.25902 3.28042 3.33414 3.42178 3.49622 3.92225 3.93561 4.27886 4.61517 4.78611 4.81394 4.84514 5.03127 5.17917 5.23810 5.27561 5.39548 5.58124 5.60746 5.90086 5.95096 6.02261 6.05224 6.16641 6.21869 6.24182 6.28423 6.32782 6.47775 6.69634 6.72271 7.58357 7.87320 8.03619 8.19922 8.38400 8.52627 8.77684 9.16035 10.57185 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.003188 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.271070 B = 8779.553344 C =10082.177980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.038 3.962 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.617 4.617 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.565 6.565 11 C 0.059 3.941 12 N -0.624 5.624 13 C 0.567 3.433 14 O -0.555 6.555 15 C -0.097 4.097 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.007 4.007 19 C 0.222 3.778 20 N -0.267 5.267 21 N -0.051 5.051 22 N -0.228 5.228 23 H 0.476 0.524 24 N -0.290 5.290 25 C -0.086 4.086 26 C -0.067 4.067 27 C 0.124 3.876 28 H 0.267 0.733 29 H 0.375 0.625 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.074 0.926 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 -7.966 8.912 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.168 4.168 3 Si 0.893 3.107 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.655 4.655 8 H 0.084 0.916 9 C 0.176 3.824 10 O -0.372 6.372 11 C -0.064 4.064 12 N -0.357 5.357 13 C 0.358 3.642 14 O -0.436 6.436 15 C -0.101 4.101 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.011 4.011 19 C -0.058 4.058 20 N -0.140 5.140 21 N -0.046 5.046 22 N -0.074 5.074 23 H 0.330 0.670 24 N -0.141 5.141 25 C -0.106 4.106 26 C -0.086 4.086 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.225 0.775 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.192 -7.921 8.724 15.580 hybrid contribution -0.428 -0.651 0.585 0.974 sum -10.620 -8.571 9.309 16.520 Atomic orbital electron populations 1.70957 1.06970 1.30618 1.44731 1.25977 0.96203 1.03035 0.91608 0.83577 0.75169 0.74936 0.76997 1.20558 1.21091 1.20995 1.22225 0.97776 0.91874 1.53649 0.91562 1.20141 0.88202 0.93001 0.81031 1.86267 1.57175 1.55871 1.37898 1.24697 0.99936 0.79016 1.02705 1.50050 1.25980 1.04252 1.55406 1.17864 0.85157 0.81602 0.79617 1.90727 1.58053 1.42764 1.52010 1.20240 0.95707 0.94527 0.99632 1.22101 0.94263 1.00467 0.95263 1.21130 0.95598 0.95398 0.98410 1.17415 0.89363 0.94869 0.99457 1.23724 0.97563 0.85598 0.98886 1.76100 1.01131 1.22731 1.14050 1.78897 1.14848 0.99827 1.11054 1.47736 1.17887 1.05195 1.36543 0.67002 1.74990 0.98584 1.25429 1.15140 1.21086 0.94377 0.98933 0.96200 1.21199 0.94444 0.96184 0.96807 1.23349 0.89435 0.90222 0.96732 0.92079 0.77533 0.88935 0.90687 0.82946 0.84378 0.84129 0.83893 0.90722 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.57 12.80 55.43 0.71 -21.86 16 2 C 0.04 0.92 5.26 -17.82 -0.09 0.83 16 3 Si 1.07 22.01 29.92 -169.99 -5.09 16.92 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.62 -14.99 8.57 -34.44 -0.30 -15.29 16 8 H 0.07 1.60 7.85 -52.48 -0.41 1.19 16 9 C 0.22 4.89 1.08 -90.85 -0.10 4.79 16 10 O -0.56 -13.43 13.46 -35.23 -0.47 -13.90 16 11 C 0.06 1.16 4.86 -2.98 -0.01 1.14 16 12 N -0.62 -12.54 3.60 -179.47 -0.65 -13.19 16 13 C 0.57 11.28 7.98 -12.38 -0.10 11.18 16 14 O -0.55 -12.38 17.09 5.30 0.09 -12.29 16 15 C -0.10 -1.59 5.88 -104.93 -0.62 -2.21 16 16 C -0.10 -1.51 9.07 -39.24 -0.36 -1.87 16 17 C -0.09 -1.10 9.68 -39.33 -0.38 -1.48 16 18 C -0.01 -0.10 5.88 -104.81 -0.62 -0.71 16 19 C 0.22 2.73 7.93 -156.27 -1.24 1.49 16 20 N -0.27 -3.31 12.22 32.15 0.39 -2.92 16 21 N -0.05 -0.53 13.47 60.35 0.81 0.29 16 22 N -0.23 -1.77 7.90 60.35 0.48 -1.29 16 23 H 0.48 1.30 8.96 -340.36 -3.05 -1.75 16 24 N -0.29 -3.09 12.07 32.16 0.39 -2.70 16 25 C -0.09 -1.07 9.68 -39.33 -0.38 -1.45 16 26 C -0.07 -0.96 9.58 -39.24 -0.38 -1.34 16 27 C 0.12 2.59 8.23 -2.97 -0.02 2.57 16 28 H 0.27 6.48 5.51 -40.82 -0.23 6.26 16 29 H 0.38 8.71 6.92 45.56 0.32 9.02 16 30 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 31 H 0.08 1.40 6.09 -51.93 -0.32 1.09 16 32 H 0.15 2.28 3.89 -52.48 -0.20 2.07 16 33 H 0.14 1.56 7.87 -52.49 -0.41 1.15 16 34 H 0.14 1.51 7.87 -52.49 -0.41 1.09 16 35 H 0.14 1.96 7.66 -52.48 -0.40 1.56 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -30.71 324.48 -8.22 -38.92 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.18 Total: 9.47 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -4.59 Total: -2.34 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 2.13 Total: -41.67 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.38 Total: -26.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.09 Total: 16.92 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.71 -8.22 -38.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.621 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds