Wall clock time and date at job start Tue Mar 31 2020 04:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48502 * 109.46994 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47621 * 119.99829 * 3 2 1 6 6 H 1.48501 * 109.47038 * 239.99903 * 3 2 1 7 7 C 1.37872 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00575 * 193.54168 * 7 2 1 9 9 C 1.50703 * 119.99960 * 13.53849 * 7 2 1 10 10 O 1.42908 * 112.94246 * 53.32537 * 9 7 2 11 11 C 1.53937 * 113.74568 * 281.58640 * 9 7 2 12 12 N 1.47579 * 86.12249 * 222.04474 * 11 9 7 13 13 C 1.34772 * 134.49680 * 204.64079 * 12 11 9 14 14 O 1.21572 * 120.00095 * 180.95730 * 13 12 11 15 15 C 1.47733 * 120.00126 * 0.95717 * 13 12 11 16 16 C 1.39692 * 120.02545 * 351.81784 * 15 13 12 17 17 C 1.37688 * 119.97264 * 179.69592 * 16 15 13 18 18 C 1.39465 * 120.02268 * 0.60267 * 17 16 15 19 19 C 1.48366 * 119.96978 * 179.70107 * 18 17 16 20 20 N 1.34087 * 126.68081 * 180.02562 * 19 18 17 21 21 N 1.28977 * 107.26290 * 179.97438 * 20 19 18 22 22 N 1.28724 * 108.96070 * 359.97438 * 21 20 19 23 23 H 0.97002 * 125.33963 * 179.97438 * 22 21 20 24 24 N 1.28867 * 109.32798 * 359.73151 * 22 21 20 25 25 C 1.39462 * 120.05888 * 359.66967 * 18 17 16 26 26 C 1.37682 * 120.02396 * 0.02687 * 25 18 17 27 27 C 1.47584 * 91.01010 * 24.64176 * 12 11 9 28 28 H 0.97000 * 120.00250 * 185.75871 * 1 2 3 29 29 H 0.96705 * 113.99372 * 303.41984 * 10 9 7 30 30 H 1.08999 * 113.77352 * 336.35189 * 11 9 7 31 31 H 1.09002 * 113.76847 * 107.74505 * 11 9 7 32 32 H 1.08006 * 120.01723 * 359.97044 * 16 15 13 33 33 H 1.07995 * 119.98827 * 180.29264 * 17 16 15 34 34 H 1.07993 * 119.98775 * 180.02562 * 25 18 17 35 35 H 1.08004 * 120.01093 * 180.02562 * 26 25 18 36 36 H 1.08998 * 113.76858 * 221.05929 * 27 12 11 37 37 H 1.08994 * 113.77196 * 89.66154 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0620 -1.2070 0.2195 9 6 1.2824 -2.4811 -0.3044 10 8 0.5582 -2.4354 -1.5356 11 6 0.4638 -3.0281 0.8790 12 7 0.9851 -4.3547 0.4966 13 6 0.5594 -5.6220 0.6673 14 8 1.2242 -6.5486 0.2461 15 6 -0.7152 -5.8852 1.3664 16 6 -1.3940 -4.8410 1.9992 17 6 -2.5850 -5.0864 2.6450 18 6 -3.1073 -6.3791 2.6784 19 6 -4.3874 -6.6434 3.3804 20 7 -5.0081 -7.8263 3.4960 21 7 -6.0854 -7.6283 4.1770 22 7 -6.1603 -6.3814 4.4881 23 1 -6.8762 -5.9728 4.9994 24 7 -5.1326 -5.7621 4.0180 25 6 -2.4277 -7.4235 2.0519 26 6 -1.2398 -7.1795 1.4001 27 6 2.1599 -3.7363 -0.1479 28 1 -0.4850 -0.8358 0.0843 29 1 -0.0867 -1.7165 -1.5860 30 1 0.8132 -2.6825 1.8519 31 1 -0.6140 -2.9263 0.7520 32 1 -0.9870 -3.8408 1.9780 33 1 -3.1123 -4.2785 3.1303 34 1 -2.8334 -8.4240 2.0781 35 1 -0.7139 -7.9883 0.9146 36 1 2.4364 -4.1999 -1.0948 37 1 3.0076 -3.5987 0.5232 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606346607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:46 Heat of formation + Delta-G solvation = 91.154088 kcal Electronic energy + Delta-G solvation = -25085.360302 eV Core-core repulsion = 21252.624112 eV Total energy + Delta-G solvation = -3832.736191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.53347 -41.75530 -40.18837 -38.96038 -36.19976 -35.50510 -34.73067 -34.31419 -32.48297 -31.96494 -30.11036 -27.47924 -27.11055 -25.81786 -25.72508 -23.51985 -23.22059 -21.96761 -20.61240 -20.27048 -19.92282 -18.31546 -18.20625 -17.98642 -17.33907 -16.85684 -16.54513 -15.85998 -15.84481 -15.60736 -15.41488 -15.02444 -14.66192 -14.58461 -14.20630 -14.12286 -13.88151 -13.69629 -13.40144 -13.11258 -12.96256 -12.61517 -12.47084 -12.44671 -12.31514 -12.05055 -12.03740 -11.88778 -11.30649 -11.09307 -10.70799 -10.23454 -10.14460 -9.95100 -9.62295 -8.64761 -6.45519 -0.75873 0.06894 0.23484 0.94894 1.35761 1.63527 1.67166 1.74030 1.81184 1.88709 2.52628 2.57815 2.72067 2.92369 3.04530 3.23919 3.51691 3.75987 3.81523 3.87725 4.05953 4.15967 4.25612 4.31811 4.35379 4.43855 4.49485 4.59067 4.64444 4.77106 4.92291 4.96914 5.10436 5.19082 5.27062 5.56393 5.62484 5.75649 6.12122 6.48728 6.62803 6.93442 6.96835 7.04077 7.29647 8.68511 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.003188 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.271070 B = 8779.553344 C =10082.177980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.002 3.998 3 Si 1.109 2.891 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.280 1.280 7 C -0.631 4.631 8 H 0.062 0.938 9 C 0.199 3.801 10 O -0.576 6.576 11 C 0.078 3.922 12 N -0.626 5.626 13 C 0.563 3.437 14 O -0.587 6.587 15 C -0.122 4.122 16 C -0.102 4.102 17 C -0.080 4.080 18 C 0.001 3.999 19 C 0.207 3.793 20 N -0.286 5.286 21 N -0.053 5.053 22 N -0.197 5.197 23 H 0.496 0.504 24 N -0.288 5.288 25 C -0.077 4.077 26 C -0.066 4.066 27 C 0.122 3.878 28 H 0.266 0.734 29 H 0.375 0.625 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.064 0.936 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 -7.840 10.406 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.200 4.200 3 Si 0.931 3.069 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.206 1.206 7 C -0.669 4.669 8 H 0.080 0.920 9 C 0.158 3.842 10 O -0.384 6.384 11 C -0.044 4.044 12 N -0.358 5.358 13 C 0.355 3.645 14 O -0.471 6.471 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.100 4.100 18 C -0.003 4.003 19 C -0.073 4.073 20 N -0.159 5.159 21 N -0.048 5.048 22 N -0.048 5.048 23 H 0.355 0.645 24 N -0.141 5.141 25 C -0.097 4.097 26 C -0.085 4.085 27 C 0.000 4.000 28 H 0.077 0.923 29 H 0.224 0.776 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.700 -7.807 10.240 17.399 hybrid contribution -0.100 -0.733 0.177 0.760 sum -11.800 -8.539 10.418 17.908 Atomic orbital electron populations 1.71012 1.07484 1.30696 1.45858 1.27005 0.96413 1.05610 0.91016 0.83009 0.74342 0.71870 0.77654 1.21010 1.19510 1.20596 1.22434 0.97787 0.92905 1.53788 0.91969 1.20343 0.89219 0.93089 0.81511 1.86253 1.57306 1.55856 1.38989 1.24478 1.00099 0.78217 1.01652 1.50043 1.25692 1.04674 1.55442 1.18436 0.86020 0.80874 0.79128 1.90694 1.59312 1.43476 1.53572 1.20060 0.94946 0.96051 1.01474 1.22000 0.94833 0.99728 0.95482 1.21241 0.94805 0.96094 0.97837 1.17535 0.89471 0.94751 0.98497 1.23598 0.97788 0.86018 0.99884 1.76089 1.01797 1.23103 1.14890 1.78857 1.14330 1.00569 1.11016 1.47805 1.17479 1.04479 1.35071 0.64476 1.74950 0.98945 1.25388 1.14826 1.21226 0.93413 0.99879 0.95175 1.21242 0.94981 0.95351 0.96886 1.23357 0.90123 0.89697 0.96854 0.92291 0.77611 0.88206 0.89754 0.83436 0.82582 0.82199 0.83809 0.91734 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.67 12.80 21.44 0.27 -45.40 16 2 C 0.00 0.08 5.26 84.65 0.45 0.53 16 3 Si 1.11 43.71 29.92 68.60 2.05 45.77 16 4 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.63 -30.60 8.57 25.60 0.22 -30.38 16 8 H 0.06 2.99 7.85 -2.91 -0.02 2.97 16 9 C 0.20 9.01 1.08 -10.88 -0.01 9.00 16 10 O -0.58 -27.78 13.46 -148.98 -2.00 -29.79 16 11 C 0.08 3.04 4.86 86.48 0.42 3.46 16 12 N -0.63 -25.34 3.60 -843.82 -3.04 -28.38 16 13 C 0.56 22.64 7.98 86.75 0.69 23.33 16 14 O -0.59 -26.74 17.09 -3.94 -0.07 -26.81 16 15 C -0.12 -3.95 5.88 -20.06 -0.12 -4.07 16 16 C -0.10 -2.90 9.07 22.49 0.20 -2.70 16 17 C -0.08 -1.90 9.68 22.44 0.22 -1.68 16 18 C 0.00 0.02 5.88 -19.99 -0.12 -0.09 16 19 C 0.21 4.57 7.93 137.32 1.09 5.66 16 20 N -0.29 -6.44 12.22 -52.21 -0.64 -7.08 16 21 N -0.05 -0.95 13.47 37.02 0.50 -0.45 16 22 N -0.20 -2.46 7.90 37.02 0.29 -2.17 16 23 H 0.50 1.09 8.96 -347.53 -3.12 -2.03 16 24 N -0.29 -5.30 12.07 -52.15 -0.63 -5.93 16 25 C -0.08 -1.79 9.68 22.43 0.22 -1.57 16 26 C -0.07 -1.82 9.58 22.49 0.22 -1.61 16 27 C 0.12 5.14 8.23 86.48 0.71 5.86 16 28 H 0.27 12.87 5.51 -92.71 -0.51 12.36 16 29 H 0.37 17.66 6.92 -74.05 -0.51 17.15 16 30 H 0.10 3.74 8.09 -2.39 -0.02 3.72 16 31 H 0.08 3.13 6.09 -2.39 -0.01 3.11 16 32 H 0.15 4.29 3.89 -2.91 -0.01 4.28 16 33 H 0.16 3.13 7.87 -2.91 -0.02 3.11 16 34 H 0.16 3.08 7.87 -2.91 -0.02 3.06 16 35 H 0.14 3.91 7.66 -2.91 -0.02 3.89 16 36 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.11 4.08 8.09 -2.39 -0.02 4.06 16 Total: -1.00 -64.73 324.48 -1.27 -66.00 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -2.19 Total: 28.51 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 4.18 Total: 5.73 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -3.24 Total: -89.41 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -2.07 Total: -56.60 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.05 Total: 45.77 kcal Total: -64.73 -1.27 -66.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.154 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds