Wall clock time and date at job start Tue Mar 31 2020 04:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39971 * 119.94219 * 2 1 4 4 C 1.35751 * 119.35380 * 180.23165 * 3 2 1 5 5 C 1.50699 * 120.42436 * 179.76845 * 4 3 2 6 6 N 1.36317 * 119.15497 * 359.49678 * 4 3 2 7 7 N 1.39912 * 132.16232 * 180.25271 * 6 4 3 8 8 C 1.30695 * 109.51864 * 180.02562 * 7 6 4 9 9 C 1.40645 * 108.72691 * 359.97438 * 8 7 6 10 10 C 1.46589 * 126.53567 * 180.02562 * 9 8 7 11 11 O 1.21717 * 120.00037 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00236 * 359.97438 * 10 9 8 13 13 C 1.46503 * 120.00128 * 180.02562 * 12 10 9 14 14 C 1.53947 * 113.74222 * 253.74392 * 13 12 10 15 15 N 1.47810 * 86.03453 * 222.08385 * 14 13 12 16 16 C 1.36938 * 134.45594 * 204.64409 * 15 14 13 17 17 H 1.07993 * 120.00212 * 173.34775 * 16 15 14 18 18 C 1.38813 * 119.99641 * 353.34794 * 16 15 14 19 19 N 1.31619 * 120.00144 * 5.06461 * 18 16 15 20 20 Si 1.86803 * 119.99692 * 185.06175 * 18 16 15 21 21 H 1.48499 * 109.46962 * 94.99271 * 20 18 16 22 22 H 1.48500 * 109.47021 * 214.98596 * 20 18 16 23 23 H 1.48495 * 109.47448 * 334.98997 * 20 18 16 24 24 C 1.47580 * 91.05144 * 24.54807 * 15 14 13 25 25 C 1.36598 * 119.73131 * 0.27463 * 6 4 3 26 26 N 1.31491 * 119.94979 * 179.74210 * 2 1 3 27 27 H 1.09007 * 109.47117 * 270.25521 * 1 2 3 28 28 H 1.08996 * 109.47802 * 30.25933 * 1 2 3 29 29 H 1.09005 * 109.47180 * 150.26062 * 1 2 3 30 30 H 1.07995 * 120.32530 * 0.02562 * 3 2 1 31 31 H 1.08992 * 109.47126 * 269.72413 * 5 4 3 32 32 H 1.08996 * 109.46995 * 149.72119 * 5 4 3 33 33 H 1.09004 * 109.46733 * 29.72353 * 5 4 3 34 34 H 1.08000 * 125.63485 * 180.02562 * 8 7 6 35 35 H 0.96998 * 120.00047 * 0.02562 * 12 10 9 36 36 H 1.08998 * 112.94079 * 25.33543 * 13 12 10 37 37 H 1.08994 * 113.76646 * 336.35063 * 14 13 12 38 38 H 1.08999 * 113.76816 * 107.74287 * 14 13 12 39 39 H 0.97005 * 119.99913 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.76969 * 221.14644 * 24 15 14 41 41 H 1.09000 * 113.76698 * 89.75745 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.2129 0.0000 4 6 3.5631 1.1990 -0.0048 5 6 4.3395 2.4905 -0.0101 6 7 4.2149 0.0018 0.0010 7 7 5.5749 -0.3271 0.0029 8 6 5.7098 -1.6271 0.0084 9 6 4.4315 -2.2137 0.0110 10 6 4.1296 -3.6481 0.0177 11 8 2.9728 -4.0266 0.0198 12 7 5.1329 -4.5480 0.0215 13 6 4.8312 -5.9816 0.0276 14 6 5.0896 -6.6636 1.3833 15 7 5.6738 -7.7716 0.5985 16 6 5.8609 -9.1098 0.8208 17 1 6.2274 -9.7430 0.0264 18 6 5.5795 -9.6523 2.0671 19 7 5.0396 -8.9026 3.0045 20 14 5.9672 -11.4465 2.4138 21 1 7.2988 -11.5486 3.0631 22 1 4.9319 -12.0111 3.3163 23 1 5.9791 -12.2059 1.1378 24 6 5.9721 -6.8574 -0.5210 25 6 3.4971 -1.1604 0.0057 26 7 2.1635 -1.1393 0.0051 27 1 -0.3634 0.0046 1.0277 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3634 -0.8923 -0.5098 30 1 1.6700 2.1507 0.0004 31 1 4.5273 2.7973 -1.0390 32 1 5.2891 2.3457 0.5049 33 1 3.7635 3.2627 0.4999 34 1 6.6478 -2.1623 0.0114 35 1 6.0549 -4.2464 0.0202 36 1 3.8559 -6.2123 -0.4010 37 1 5.8123 -6.1390 2.0083 38 1 4.1799 -6.9350 1.9190 39 1 4.8426 -9.2819 3.8754 40 1 5.7660 -7.2833 -1.5029 41 1 6.9547 -6.3900 -0.4566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030775021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:35 Heat of formation + Delta-G solvation = 138.574618 kcal Electronic energy + Delta-G solvation = -25193.135380 eV Core-core repulsion = 21498.288593 eV Total energy + Delta-G solvation = -3694.846787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.68807 -39.30624 -38.46298 -37.20685 -35.31336 -33.38164 -32.49330 -31.74864 -30.48696 -28.85671 -28.12040 -27.28595 -24.72966 -24.29227 -23.24125 -22.36162 -21.87891 -19.77685 -19.47967 -18.57375 -17.45842 -16.68262 -16.59183 -16.51189 -15.61408 -15.20046 -14.86357 -14.35608 -14.24845 -14.09806 -13.88542 -13.75539 -13.63282 -13.57664 -13.35088 -12.81506 -12.56601 -12.54512 -12.06841 -11.77153 -11.68050 -11.37687 -11.34939 -11.05355 -10.82549 -10.70437 -10.33640 -10.00638 -9.95495 -9.74850 -9.46242 -9.33727 -8.74123 -8.34205 -8.01561 -6.83772 -5.72654 -3.05475 0.14742 0.52788 1.66035 2.04650 2.95391 3.42995 3.46717 3.47397 3.50549 3.51851 3.76222 3.84773 3.97535 4.42144 4.52469 4.62942 4.74335 4.81032 4.86012 4.91848 5.05716 5.19073 5.20637 5.22439 5.32977 5.50985 5.54641 5.59345 5.71056 5.84067 6.00571 6.13353 6.22236 6.33108 6.52571 6.67739 6.93553 7.08861 7.32711 7.46091 7.49844 7.65222 8.01968 8.10774 8.83434 9.08443 9.74705 10.63442 11.44572 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.002593 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.447334 B =10793.641222 C =11362.430553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.209 3.791 3 C -0.228 4.228 4 C 0.196 3.804 5 C -0.118 4.118 6 N -0.311 5.311 7 N -0.315 5.315 8 C 0.129 3.871 9 C -0.283 4.283 10 C 0.591 3.409 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.097 3.903 14 C 0.157 3.843 15 N -0.608 5.608 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.112 3.888 25 C 0.325 3.675 26 N -0.445 5.445 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.168 0.832 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.205 0.795 35 H 0.392 0.608 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.048 0.952 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 27.797 -7.259 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.047 3.953 3 C -0.251 4.251 4 C 0.079 3.921 5 C -0.175 4.175 6 N -0.081 5.081 7 N -0.137 5.137 8 C -0.053 4.053 9 C -0.299 4.299 10 C 0.378 3.622 11 O -0.408 6.408 12 N -0.366 5.366 13 C -0.008 4.008 14 C 0.030 3.970 15 N -0.335 5.335 16 C -0.352 4.352 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.562 5.562 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.015 4.015 25 C 0.094 3.906 26 N -0.158 5.158 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.185 0.815 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.222 0.778 35 H 0.225 0.775 36 H 0.128 0.872 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.247 27.345 -7.069 28.562 hybrid contribution 0.934 -0.798 0.398 1.291 sum -3.313 26.547 -6.672 27.572 Atomic orbital electron populations 1.20850 0.86740 1.04649 1.04298 1.22103 0.98238 0.87250 0.87684 1.21572 0.91544 1.01366 1.10668 1.20787 0.91993 0.86329 0.92947 1.21000 1.01036 0.90728 1.04731 1.47005 1.07730 1.05915 1.47452 1.77494 0.88901 1.15874 1.31420 1.24166 0.98416 0.90609 0.92081 1.19610 0.90372 0.93625 1.26320 1.16769 0.85483 0.83405 0.76571 1.90834 1.19703 1.80400 1.49910 1.45855 1.08335 1.06905 1.75484 1.23841 1.00049 0.76155 1.00782 1.22661 0.97460 0.85249 0.91603 1.45712 1.69572 1.03031 1.15144 1.18982 1.38766 0.81347 0.96134 0.90062 1.24855 1.01316 0.98300 0.95876 1.69861 1.46784 1.35093 1.04486 0.86106 0.77610 0.84238 0.77861 1.21645 1.21685 1.20507 1.22875 0.94885 0.90256 0.93465 1.20390 0.87852 0.86000 0.96383 1.68179 1.03681 1.28110 1.15798 0.88963 0.89668 0.89153 0.81474 0.88794 0.89144 0.88650 0.77816 0.77484 0.87191 0.95207 0.90989 0.93581 0.93336 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.19 36.01 0.37 -0.32 16 2 C 0.21 2.10 6.83 -82.09 -0.56 1.54 16 3 C -0.23 -1.61 9.38 -39.82 -0.37 -1.99 16 4 C 0.20 1.71 6.85 -81.49 -0.56 1.16 16 5 C -0.12 -0.56 10.09 36.01 0.36 -0.20 16 6 N -0.31 -3.94 3.86 -8.26 -0.03 -3.97 16 7 N -0.32 -3.97 12.39 30.76 0.38 -3.59 16 8 C 0.13 1.57 11.44 -17.13 -0.20 1.38 16 9 C -0.28 -4.48 6.17 -104.65 -0.65 -5.13 16 10 C 0.59 11.06 7.78 -12.89 -0.10 10.96 16 11 O -0.53 -12.17 16.36 5.17 0.08 -12.08 16 12 N -0.72 -12.16 5.36 -56.68 -0.30 -12.47 16 13 C 0.10 2.00 4.40 -70.15 -0.31 1.69 16 14 C 0.16 3.92 7.24 -2.84 -0.02 3.90 16 15 N -0.61 -16.11 3.70 -177.91 -0.66 -16.77 16 16 C -0.22 -6.47 10.70 -15.06 -0.16 -6.63 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -28.13 11.51 55.49 0.64 -27.49 16 20 Si 0.91 22.62 29.56 -169.99 -5.02 17.59 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.11 2.32 8.69 -2.97 -0.03 2.30 16 25 C 0.33 5.07 7.74 -155.83 -1.21 3.87 16 26 N -0.45 -6.75 10.18 -8.25 -0.08 -6.83 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.09 0.19 8.09 -51.93 -0.42 -0.23 16 34 H 0.21 1.66 7.46 -52.49 -0.39 1.26 16 35 H 0.39 5.25 7.63 -40.82 -0.31 4.94 16 36 H 0.11 2.48 7.50 -51.93 -0.39 2.09 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 2.04 7.37 -51.93 -0.38 1.66 16 39 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -39.44 354.50 -8.42 -47.85 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.24 Total: 0.18 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -3.52 Total: 12.24 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -0.06 Total: -71.12 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.44 -8.42 -47.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030775021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.428 kcal (2) G-P(sol) polarization free energy of solvation -39.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds