Wall clock time and date at job start Tue Mar 31 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99974 * 2 1 4 4 C 1.53002 * 109.46860 * 86.16065 * 3 2 1 5 5 H 1.09007 * 112.96263 * 294.67556 * 4 3 2 6 6 C 1.53945 * 113.76932 * 66.35497 * 4 3 2 7 7 C 1.53954 * 86.28773 * 137.90812 * 6 4 3 8 8 N 1.47581 * 113.76983 * 163.00152 * 4 3 2 9 9 C 1.36932 * 134.49275 * 41.06035 * 8 4 3 10 10 H 1.08001 * 120.00358 * 335.82920 * 9 8 4 11 11 C 1.38817 * 119.99740 * 155.82145 * 9 8 4 12 12 N 1.31625 * 119.99638 * 169.16936 * 11 9 8 13 13 Si 1.86796 * 120.00147 * 349.17197 * 11 9 8 14 14 H 1.48504 * 109.46859 * 90.07893 * 13 11 9 15 15 H 1.48496 * 109.46967 * 210.07685 * 13 11 9 16 16 H 1.48501 * 109.47043 * 330.08122 * 13 11 9 17 17 C 1.34781 * 120.00370 * 180.02562 * 2 1 3 18 18 O 1.21679 * 119.99987 * 186.71927 * 17 2 1 19 19 C 1.46810 * 119.99638 * 6.71721 * 17 2 1 20 20 C 1.40419 * 126.53970 * 7.27841 * 19 17 2 21 21 N 1.30980 * 108.76067 * 179.81606 * 20 19 17 22 22 N 1.39713 * 109.48958 * 0.44945 * 21 20 19 23 23 C 1.36346 * 133.19031 * 179.74156 * 22 21 20 24 24 C 1.35298 * 119.80786 * 180.02562 * 23 22 21 25 25 N 1.33240 * 121.26981 * 359.95667 * 24 23 22 26 26 C 1.31410 * 121.08534 * 0.02562 * 25 24 23 27 27 C 1.36823 * 107.96992 * 359.71335 * 22 21 20 28 28 H 1.09000 * 109.47769 * 96.09840 * 1 2 3 29 29 H 1.09006 * 109.47089 * 216.10029 * 1 2 3 30 30 H 1.08999 * 109.47028 * 336.09269 * 1 2 3 31 31 H 1.09001 * 109.46988 * 326.16196 * 3 2 1 32 32 H 1.08995 * 109.47238 * 206.16026 * 3 2 1 33 33 H 1.08996 * 113.74078 * 252.25097 * 6 4 3 34 34 H 1.08995 * 113.73926 * 23.45551 * 6 4 3 35 35 H 1.09004 * 113.76796 * 90.69456 * 7 6 4 36 36 H 1.08997 * 113.76850 * 221.97953 * 7 6 4 37 37 H 0.97000 * 119.99816 * 180.02562 * 12 11 9 38 38 H 1.08000 * 125.61973 * 359.97331 * 20 19 17 39 39 H 1.08002 * 120.09421 * 359.96865 * 23 22 21 40 40 H 1.08010 * 119.36019 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.18229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3688 1.7587 1.4393 5 1 1.4227 2.0124 1.9176 6 6 3.2762 0.8585 2.2973 7 6 3.8808 2.1629 2.8477 8 7 3.4104 2.7924 1.5958 9 6 3.7884 3.8912 0.8714 10 1 3.5693 3.9433 -0.1848 11 6 4.4532 4.9383 1.4948 12 7 5.0036 5.8913 0.7726 13 14 4.5669 4.9950 3.3585 14 1 5.7927 4.2833 3.8014 15 1 4.6257 6.4090 3.8080 16 1 3.3726 4.3375 3.9474 17 6 2.1389 -1.1672 -0.0005 18 8 3.3494 -1.1708 0.1228 19 6 1.4124 -2.4342 -0.1498 20 6 0.0474 -2.5857 -0.4420 21 7 -0.2317 -3.8642 -0.4993 22 7 0.9236 -4.6056 -0.2397 23 6 1.1787 -5.9434 -0.1735 24 6 2.4298 -6.3765 0.1053 25 7 3.4273 -5.5190 0.3176 26 6 3.2292 -4.2210 0.2638 27 6 1.9492 -3.7266 -0.0217 28 1 -0.3635 -0.1092 -1.0218 29 1 -0.3633 -0.8304 0.6055 30 1 -0.3633 0.9395 0.4165 31 1 1.6399 2.0102 -0.5723 32 1 3.1779 1.1223 -0.4531 33 1 2.7366 0.2757 3.0438 34 1 3.9765 0.2594 1.7154 35 1 3.3797 2.5369 3.7406 36 1 4.9657 2.1359 2.9487 37 1 5.4684 6.6228 1.2082 38 1 -0.6559 -1.7809 -0.5967 39 1 0.3842 -6.6552 -0.3421 40 1 2.6237 -7.4378 0.1564 41 1 4.0484 -3.5391 0.4379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:41 Heat of formation + Delta-G solvation = 175.624593 kcal Electronic energy + Delta-G solvation = -26047.710905 eV Core-core repulsion = 22354.470725 eV Total energy + Delta-G solvation = -3693.240180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.85880 -39.84275 -38.60778 -37.78323 -35.39574 -33.98960 -32.19769 -31.70200 -30.28872 -28.51323 -28.15001 -26.84466 -25.09780 -24.42084 -23.03018 -22.73890 -22.19549 -19.83738 -19.09789 -18.47523 -17.83345 -16.91737 -16.63448 -16.42849 -16.16400 -15.57250 -15.45725 -15.23925 -14.96713 -14.23758 -13.99366 -13.83331 -13.42821 -13.29796 -13.23988 -13.01713 -12.76534 -12.38008 -11.86706 -11.81098 -11.56058 -11.36408 -11.22226 -11.03563 -10.67198 -10.36212 -10.21113 -10.15433 -9.99390 -9.83151 -9.64479 -9.36320 -8.81678 -8.42674 -8.19801 -6.95826 -5.87336 -3.24916 0.01804 0.44001 1.53563 1.80394 2.88678 3.01964 3.40788 3.43904 3.49038 3.50378 3.70028 3.81270 3.88151 4.38902 4.54311 4.59800 4.64040 4.79843 4.86134 4.99679 5.01013 5.08515 5.23248 5.38003 5.42418 5.54377 5.73984 5.76137 5.86350 5.91963 6.01428 6.06011 6.23843 6.37449 6.53536 6.58499 6.62917 6.70363 6.88452 7.21140 7.23394 7.42451 7.54448 8.34768 8.41693 8.74846 9.69995 10.41702 11.29772 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.003167 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.795972 B = 8839.173674 C = 9376.876403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.603 5.603 3 C 0.121 3.879 4 C 0.128 3.872 5 H 0.045 0.955 6 C -0.142 4.142 7 C 0.095 3.905 8 N -0.613 5.613 9 C -0.227 4.227 10 H 0.094 0.906 11 C 0.020 3.980 12 N -0.920 5.920 13 Si 0.884 3.116 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.267 1.267 17 C 0.593 3.407 18 O -0.533 6.533 19 C -0.264 4.264 20 C 0.093 3.907 21 N -0.307 5.307 22 N -0.249 5.249 23 C 0.060 3.940 24 C 0.028 3.972 25 N -0.446 5.446 26 C 0.172 3.828 27 C 0.092 3.908 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.262 0.738 38 H 0.221 0.779 39 H 0.181 0.819 40 H 0.186 0.814 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 -24.147 -1.659 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.336 5.336 3 C -0.002 4.002 4 C 0.020 3.980 5 H 0.062 0.938 6 C -0.181 4.181 7 C -0.030 4.030 8 N -0.341 5.341 9 C -0.354 4.354 10 H 0.111 0.889 11 C -0.178 4.178 12 N -0.565 5.565 13 Si 0.714 3.286 14 H -0.213 1.213 15 H -0.228 1.228 16 H -0.192 1.192 17 C 0.381 3.619 18 O -0.410 6.410 19 C -0.282 4.282 20 C -0.085 4.085 21 N -0.131 5.131 22 N -0.017 5.017 23 C -0.069 4.069 24 C -0.114 4.114 25 N -0.157 5.157 26 C -0.007 4.007 27 C -0.031 4.031 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.236 0.764 39 H 0.198 0.802 40 H 0.203 0.797 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -11.899 -25.100 -1.782 27.835 hybrid contribution -0.466 1.189 1.026 1.638 sum -12.365 -23.911 -0.756 26.930 Atomic orbital electron populations 1.22297 0.80695 1.03869 1.01094 1.47506 1.06373 1.06178 1.73546 1.21760 0.97836 0.82145 0.98427 1.22544 0.92866 0.89138 0.93421 0.93764 1.23672 0.99486 0.96159 0.98736 1.22891 0.98482 0.90904 0.90708 1.46380 1.32993 1.29773 1.24954 1.18686 1.32869 0.91912 0.91954 0.88859 1.25102 0.99839 0.95223 0.97669 1.69744 1.38839 1.13225 1.34701 0.86784 0.78449 0.76015 0.87322 1.21257 1.22794 1.19187 1.16829 0.86442 0.81959 0.76659 1.90781 1.13425 1.86722 1.50093 1.19896 0.94138 0.92269 1.21924 1.25277 0.95586 0.94269 0.93340 1.77713 1.02149 1.04320 1.28892 1.46247 1.08098 1.05779 1.41538 1.22645 1.00543 0.81852 1.01854 1.22472 0.86790 1.01435 1.00680 1.68301 1.33461 1.02881 1.11092 1.23428 0.93729 0.91819 0.91699 1.20399 0.91073 0.90745 1.00894 0.92230 0.90787 0.90051 0.90736 0.88748 0.93493 0.88382 0.94043 0.92842 0.92798 0.76356 0.80180 0.79720 0.78466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 8.65 59.84 0.52 1.07 16 2 N -0.60 -8.09 2.81 -183.07 -0.52 -8.60 16 3 C 0.12 2.05 5.34 -4.04 -0.02 2.03 16 4 C 0.13 2.47 4.57 -66.86 -0.31 2.17 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.14 -2.70 7.14 -25.79 -0.18 -2.88 16 7 C 0.10 2.11 5.87 -2.84 -0.02 2.09 16 8 N -0.61 -14.99 3.25 -169.70 -0.55 -15.55 16 9 C -0.23 -6.48 10.95 -15.06 -0.16 -6.64 16 10 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 11 C 0.02 0.58 5.50 -17.43 -0.10 0.49 16 12 N -0.92 -28.88 13.97 55.49 0.78 -28.11 16 13 Si 0.88 23.01 25.50 -169.99 -4.34 18.68 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 16 H -0.27 -6.67 5.67 56.52 0.32 -6.35 16 17 C 0.59 8.62 7.29 -12.79 -0.09 8.53 16 18 O -0.53 -9.36 13.30 5.21 0.07 -9.29 16 19 C -0.26 -3.23 5.97 -104.75 -0.63 -3.86 16 20 C 0.09 0.92 9.84 -17.09 -0.17 0.75 16 21 N -0.31 -3.33 12.60 30.76 0.39 -2.94 16 22 N -0.25 -2.62 3.91 -10.50 -0.04 -2.66 16 23 C 0.06 0.43 11.24 -16.59 -0.19 0.24 16 24 C 0.03 0.19 11.07 -17.99 -0.20 -0.01 16 25 N -0.45 -4.50 10.44 -13.26 -0.14 -4.64 16 26 C 0.17 1.94 10.98 -17.01 -0.19 1.75 16 27 C 0.09 1.10 6.77 -84.05 -0.57 0.53 16 28 H 0.06 0.39 7.27 -51.93 -0.38 0.01 16 29 H 0.07 0.53 5.44 -51.93 -0.28 0.25 16 30 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 31 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.09 1.87 7.41 -51.93 -0.38 1.48 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.96 6.21 -51.93 -0.32 1.64 16 35 H 0.04 0.92 6.26 -51.93 -0.33 0.59 16 36 H 0.05 1.22 7.63 -51.93 -0.40 0.83 16 37 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 38 H 0.22 1.42 4.43 -52.49 -0.23 1.19 16 39 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.19 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.20 2.24 7.24 -52.49 -0.38 1.86 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -36.26 333.64 -6.49 -42.75 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.87 Total: -0.92 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.30 Total: 6.26 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.08 Total: -62.51 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.34 Total: 18.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.26 -6.49 -42.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.371 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds