Wall clock time and date at job start Tue Mar 31 2020 04:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99974 * 2 1 4 4 C 1.53002 * 109.46860 * 86.16065 * 3 2 1 5 5 H 1.09007 * 112.96263 * 294.67556 * 4 3 2 6 6 C 1.53945 * 113.76932 * 66.35497 * 4 3 2 7 7 C 1.53954 * 86.28773 * 137.90812 * 6 4 3 8 8 N 1.47581 * 113.76983 * 163.00152 * 4 3 2 9 9 C 1.36932 * 134.49275 * 41.06035 * 8 4 3 10 10 H 1.08001 * 120.00358 * 335.82920 * 9 8 4 11 11 C 1.38817 * 119.99740 * 155.82145 * 9 8 4 12 12 N 1.31625 * 119.99638 * 169.16936 * 11 9 8 13 13 Si 1.86796 * 120.00147 * 349.17197 * 11 9 8 14 14 H 1.48504 * 109.46859 * 90.07893 * 13 11 9 15 15 H 1.48496 * 109.46967 * 210.07685 * 13 11 9 16 16 H 1.48501 * 109.47043 * 330.08122 * 13 11 9 17 17 C 1.34781 * 120.00370 * 180.02562 * 2 1 3 18 18 O 1.21679 * 119.99987 * 186.71927 * 17 2 1 19 19 C 1.46810 * 119.99638 * 6.71721 * 17 2 1 20 20 C 1.40419 * 126.53970 * 7.27841 * 19 17 2 21 21 N 1.30980 * 108.76067 * 179.81606 * 20 19 17 22 22 N 1.39713 * 109.48958 * 0.44945 * 21 20 19 23 23 C 1.36346 * 133.19031 * 179.74156 * 22 21 20 24 24 C 1.35298 * 119.80786 * 180.02562 * 23 22 21 25 25 N 1.33240 * 121.26981 * 359.95667 * 24 23 22 26 26 C 1.31410 * 121.08534 * 0.02562 * 25 24 23 27 27 C 1.36823 * 107.96992 * 359.71335 * 22 21 20 28 28 H 1.09000 * 109.47769 * 96.09840 * 1 2 3 29 29 H 1.09006 * 109.47089 * 216.10029 * 1 2 3 30 30 H 1.08999 * 109.47028 * 336.09269 * 1 2 3 31 31 H 1.09001 * 109.46988 * 326.16196 * 3 2 1 32 32 H 1.08995 * 109.47238 * 206.16026 * 3 2 1 33 33 H 1.08996 * 113.74078 * 252.25097 * 6 4 3 34 34 H 1.08995 * 113.73926 * 23.45551 * 6 4 3 35 35 H 1.09004 * 113.76796 * 90.69456 * 7 6 4 36 36 H 1.08997 * 113.76850 * 221.97953 * 7 6 4 37 37 H 0.97000 * 119.99816 * 180.02562 * 12 11 9 38 38 H 1.08000 * 125.61973 * 359.97331 * 20 19 17 39 39 H 1.08002 * 120.09421 * 359.96865 * 23 22 21 40 40 H 1.08010 * 119.36019 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.18229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3688 1.7587 1.4393 5 1 1.4227 2.0124 1.9176 6 6 3.2762 0.8585 2.2973 7 6 3.8808 2.1629 2.8477 8 7 3.4104 2.7924 1.5958 9 6 3.7884 3.8912 0.8714 10 1 3.5693 3.9433 -0.1848 11 6 4.4532 4.9383 1.4948 12 7 5.0036 5.8913 0.7726 13 14 4.5669 4.9950 3.3585 14 1 5.7927 4.2833 3.8014 15 1 4.6257 6.4090 3.8080 16 1 3.3726 4.3375 3.9474 17 6 2.1389 -1.1672 -0.0005 18 8 3.3494 -1.1708 0.1228 19 6 1.4124 -2.4342 -0.1498 20 6 0.0474 -2.5857 -0.4420 21 7 -0.2317 -3.8642 -0.4993 22 7 0.9236 -4.6056 -0.2397 23 6 1.1787 -5.9434 -0.1735 24 6 2.4298 -6.3765 0.1053 25 7 3.4273 -5.5190 0.3176 26 6 3.2292 -4.2210 0.2638 27 6 1.9492 -3.7266 -0.0217 28 1 -0.3635 -0.1092 -1.0218 29 1 -0.3633 -0.8304 0.6055 30 1 -0.3633 0.9395 0.4165 31 1 1.6399 2.0102 -0.5723 32 1 3.1779 1.1223 -0.4531 33 1 2.7366 0.2757 3.0438 34 1 3.9765 0.2594 1.7154 35 1 3.3797 2.5369 3.7406 36 1 4.9657 2.1359 2.9487 37 1 5.4684 6.6228 1.2082 38 1 -0.6559 -1.7809 -0.5967 39 1 0.3842 -6.6552 -0.3421 40 1 2.6237 -7.4378 0.1564 41 1 4.0484 -3.5391 0.4379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:40 Heat of formation + Delta-G solvation = 149.116745 kcal Electronic energy + Delta-G solvation = -26048.860372 eV Core-core repulsion = 22354.470725 eV Total energy + Delta-G solvation = -3694.389647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.61637 -40.99082 -39.66856 -39.10719 -36.50647 -34.77624 -34.35287 -32.45117 -31.33284 -30.27069 -29.42221 -27.78814 -25.82991 -25.56325 -24.84662 -23.95773 -23.17014 -21.06645 -20.60719 -19.30300 -18.74477 -18.54014 -17.61157 -17.42230 -17.31035 -17.02878 -16.58419 -16.30123 -15.91556 -15.45905 -15.35329 -15.11813 -14.77035 -14.47990 -14.07599 -14.03066 -13.96652 -13.86945 -13.74690 -13.24054 -12.76847 -12.60676 -12.42959 -12.36792 -11.99032 -11.96199 -11.75618 -11.71156 -11.20119 -11.08058 -10.96825 -10.92166 -10.81275 -9.64998 -9.02275 -8.90559 -8.13248 -5.46806 -0.71809 -0.29546 0.84143 0.98564 1.33391 1.36267 1.45380 1.96274 2.12827 2.44687 2.49863 2.90974 3.10248 3.13313 3.17388 3.25458 3.68990 3.75180 3.85481 3.96935 4.14830 4.25504 4.29683 4.32308 4.38964 4.41335 4.51065 4.59540 4.70726 4.74726 4.90705 4.91700 5.00031 5.03909 5.06852 5.10453 5.36815 5.37518 5.60805 5.68215 6.13391 6.20415 6.50091 6.52283 6.56401 7.28482 7.47494 8.33668 9.07992 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.003167 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.795972 B = 8839.173674 C = 9376.876403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.601 5.601 3 C 0.134 3.866 4 C 0.132 3.868 5 H 0.068 0.932 6 C -0.121 4.121 7 C 0.087 3.913 8 N -0.640 5.640 9 C -0.212 4.212 10 H 0.065 0.935 11 C -0.045 4.045 12 N -0.969 5.969 13 Si 0.944 3.056 14 H -0.284 1.284 15 H -0.305 1.305 16 H -0.246 1.246 17 C 0.589 3.411 18 O -0.576 6.576 19 C -0.293 4.293 20 C 0.110 3.890 21 N -0.321 5.321 22 N -0.252 5.252 23 C 0.070 3.930 24 C 0.029 3.971 25 N -0.453 5.453 26 C 0.144 3.856 27 C 0.083 3.917 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.260 0.740 38 H 0.251 0.749 39 H 0.223 0.777 40 H 0.229 0.771 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.411 -27.387 -0.603 31.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.333 5.333 3 C 0.010 3.990 4 C 0.026 3.974 5 H 0.086 0.914 6 C -0.159 4.159 7 C -0.037 4.037 8 N -0.368 5.368 9 C -0.340 4.340 10 H 0.082 0.918 11 C -0.238 4.238 12 N -0.618 5.618 13 Si 0.773 3.227 14 H -0.211 1.211 15 H -0.233 1.233 16 H -0.170 1.170 17 C 0.380 3.620 18 O -0.457 6.457 19 C -0.311 4.311 20 C -0.067 4.067 21 N -0.145 5.145 22 N -0.018 5.018 23 C -0.059 4.059 24 C -0.114 4.114 25 N -0.164 5.164 26 C -0.033 4.033 27 C -0.041 4.041 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.266 0.734 39 H 0.240 0.760 40 H 0.245 0.755 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.962 -28.373 -0.717 32.084 hybrid contribution 0.424 1.893 0.605 2.032 sum -14.538 -26.479 -0.112 30.208 Atomic orbital electron populations 1.22651 0.77463 1.05220 1.03420 1.47477 1.08205 1.04390 1.73228 1.21325 0.96863 0.84059 0.96737 1.22772 0.92679 0.86880 0.95076 0.91435 1.23427 0.98896 0.94860 0.98718 1.23059 0.98083 0.92357 0.90215 1.46549 1.35478 1.29202 1.25621 1.18615 1.31278 0.92718 0.91377 0.91767 1.25779 1.00580 0.95411 1.02047 1.69888 1.40955 1.14480 1.36431 0.85823 0.79074 0.75712 0.82126 1.21109 1.23271 1.17041 1.17194 0.86095 0.82876 0.75844 1.90757 1.15376 1.87364 1.52168 1.19650 0.95224 0.91223 1.24995 1.25696 0.94844 0.94717 0.91465 1.77695 1.02293 1.04628 1.29844 1.46562 1.07638 1.06779 1.40843 1.23508 1.01808 0.81138 0.99428 1.23244 0.86057 1.02769 0.99296 1.68271 1.35142 1.02709 1.10321 1.23175 0.93590 0.92323 0.94240 1.20463 0.91522 0.91268 1.00826 0.89501 0.88789 0.89236 0.90048 0.92494 0.90383 0.89861 0.92831 0.94151 0.93095 0.73404 0.76002 0.75475 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 8.65 127.77 1.11 1.87 16 2 N -0.60 -15.42 2.81 -851.34 -2.40 -17.81 16 3 C 0.13 4.56 5.34 86.38 0.46 5.02 16 4 C 0.13 4.97 4.57 45.09 0.21 5.17 16 5 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 6 C -0.12 -4.44 7.14 31.25 0.22 -4.22 16 7 C 0.09 3.77 5.87 86.44 0.51 4.28 16 8 N -0.64 -31.30 3.25 -690.80 -2.25 -33.55 16 9 C -0.21 -12.39 10.95 84.04 0.92 -11.47 16 10 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 11 C -0.04 -2.73 5.50 84.86 0.47 -2.26 16 12 N -0.97 -63.07 13.97 21.65 0.30 -62.77 16 13 Si 0.94 48.06 25.50 68.60 1.75 49.81 16 14 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 15 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 16 H -0.25 -11.56 5.67 99.48 0.56 -10.99 16 17 C 0.59 17.11 7.29 86.48 0.63 17.74 16 18 O -0.58 -21.17 13.30 -4.28 -0.06 -21.23 16 19 C -0.29 -6.89 5.97 -19.95 -0.12 -7.01 16 20 C 0.11 1.88 9.84 85.35 0.84 2.72 16 21 N -0.32 -6.04 12.60 -56.58 -0.71 -6.75 16 22 N -0.25 -4.67 3.91 -187.15 -0.73 -5.40 16 23 C 0.07 0.74 11.24 83.31 0.94 1.67 16 24 C 0.03 0.30 11.07 83.80 0.93 1.23 16 25 N -0.45 -8.59 10.44 -195.86 -2.05 -10.64 16 26 C 0.14 3.29 10.98 85.22 0.94 4.23 16 27 C 0.08 1.91 6.77 39.39 0.27 2.18 16 28 H 0.09 0.80 7.27 -2.39 -0.02 0.79 16 29 H 0.09 1.00 5.44 -2.38 -0.01 0.99 16 30 H 0.09 1.18 8.03 -2.39 -0.02 1.16 16 31 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 32 H 0.06 2.37 7.41 -2.39 -0.02 2.35 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 3.37 6.21 -2.39 -0.01 3.36 16 35 H 0.05 2.22 6.26 -2.38 -0.01 2.21 16 36 H 0.04 1.84 7.63 -2.39 -0.02 1.82 16 37 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 38 H 0.25 2.26 4.43 -2.91 -0.01 2.25 16 39 H 0.22 0.35 8.06 -2.91 -0.02 0.32 16 40 H 0.23 0.28 8.06 -2.91 -0.02 0.26 16 41 H 0.18 4.56 7.24 -2.91 -0.02 4.54 16 Total: -1.00 -83.00 333.64 3.10 -79.90 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.93 Total: 7.27 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 8.31 Total: 21.17 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -7.83 Total: -136.92 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.06 Total: -21.23 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.75 Total: 49.81 kcal Total: -83.00 3.10 -79.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.014 kcal (2) G-P(sol) polarization free energy of solvation -82.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds