Wall clock time and date at job start Tue Mar 31 2020 04:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00389 * 2 1 4 4 C 1.53005 * 109.46828 * 262.58200 * 3 2 1 5 5 H 1.08996 * 112.96665 * 310.80477 * 4 3 2 6 6 C 1.53942 * 113.76554 * 179.12579 * 4 3 2 7 7 C 1.53946 * 86.28969 * 222.09101 * 6 4 3 8 8 N 1.47579 * 113.76866 * 82.63222 * 4 3 2 9 9 C 1.36938 * 134.49467 * 318.93865 * 8 4 3 10 10 H 1.08000 * 119.99608 * 337.75282 * 9 8 4 11 11 C 1.38813 * 120.00198 * 157.75087 * 9 8 4 12 12 N 1.31610 * 119.99999 * 168.78049 * 11 9 8 13 13 Si 1.86799 * 119.99771 * 348.77871 * 11 9 8 14 14 H 1.48497 * 109.47170 * 84.52913 * 13 11 9 15 15 H 1.48505 * 109.46861 * 204.52791 * 13 11 9 16 16 H 1.48502 * 109.47442 * 324.52808 * 13 11 9 17 17 C 1.34785 * 119.99711 * 179.97438 * 2 1 3 18 18 O 1.21686 * 119.99638 * 183.71137 * 17 2 1 19 19 C 1.46810 * 119.99922 * 3.71320 * 17 2 1 20 20 C 1.40405 * 126.54206 * 320.66618 * 19 17 2 21 21 N 1.30973 * 108.76704 * 180.02562 * 20 19 17 22 22 N 1.39707 * 109.48736 * 359.97438 * 21 20 19 23 23 C 1.36363 * 133.19373 * 180.02562 * 22 21 20 24 24 C 1.35290 * 119.80727 * 179.97438 * 23 22 21 25 25 N 1.33250 * 121.27384 * 0.02562 * 24 23 22 26 26 C 1.31409 * 121.07678 * 359.97438 * 25 24 23 27 27 C 1.36821 * 107.96947 * 0.02562 * 22 21 20 28 28 H 1.08994 * 109.47289 * 265.43587 * 1 2 3 29 29 H 1.09001 * 109.46757 * 25.43905 * 1 2 3 30 30 H 1.09002 * 109.47258 * 145.43512 * 1 2 3 31 31 H 1.09000 * 109.46603 * 22.58048 * 3 2 1 32 32 H 1.09001 * 109.47316 * 142.58324 * 3 2 1 33 33 H 1.09002 * 113.74326 * 336.43715 * 6 4 3 34 34 H 1.08999 * 113.74522 * 107.64139 * 6 4 3 35 35 H 1.09006 * 113.76890 * 137.91082 * 7 6 4 36 36 H 1.09000 * 113.77010 * 269.19729 * 7 6 4 37 37 H 0.97000 * 120.00369 * 179.97438 * 12 11 9 38 38 H 1.08004 * 125.61818 * 0.06444 * 20 19 17 39 39 H 1.07997 * 120.09148 * 359.95978 * 23 22 21 40 40 H 1.08004 * 119.36455 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.17630 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.6139 1.6171 -1.4305 5 1 3.0972 0.7877 -1.9468 6 6 3.3759 2.9496 -1.5477 7 6 2.5260 3.2100 -2.8046 8 7 1.5502 2.2717 -2.2168 9 6 0.2002 2.0838 -2.3482 10 1 -0.2386 1.1284 -2.1012 11 6 -0.6043 3.1214 -2.7988 12 7 -1.8546 2.8860 -3.1359 13 14 0.0876 4.8518 -2.9269 14 1 0.7903 5.0091 -4.2255 15 1 -1.0214 5.8359 -2.8417 16 1 1.0438 5.0862 -1.8151 17 6 2.1389 -1.1673 0.0005 18 8 3.3538 -1.1684 0.0687 19 6 1.4070 -2.4374 -0.0813 20 6 0.1954 -2.7467 0.5572 21 7 -0.1443 -3.9726 0.2454 22 7 0.8189 -4.5210 -0.6051 23 6 0.9461 -5.7362 -1.2107 24 6 2.0158 -5.9853 -2.0006 25 7 2.9564 -5.0633 -2.2022 26 6 2.8764 -3.8783 -1.6398 27 6 1.7857 -3.5755 -0.8133 28 1 -0.3633 -0.0818 1.0243 29 1 -0.3633 0.9281 -0.4414 30 1 -0.3634 -0.8463 -0.5830 31 1 1.5575 2.0577 0.3946 32 1 3.0861 1.1752 0.6244 33 1 3.1754 3.6431 -0.7310 34 1 4.4398 2.8302 -1.7523 35 1 2.1592 4.2335 -2.8827 36 1 2.9833 2.8506 -3.7264 37 1 -2.4169 3.6111 -3.4504 38 1 -0.3646 -2.0829 1.1993 39 1 0.1951 -6.4976 -1.0598 40 1 2.1096 -6.9503 -2.4763 41 1 3.6473 -3.1420 -1.8130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:45 Heat of formation + Delta-G solvation = 168.405885 kcal Electronic energy + Delta-G solvation = -26489.507768 eV Core-core repulsion = 22795.954562 eV Total energy + Delta-G solvation = -3693.553207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64271 -39.60643 -38.47588 -37.89612 -34.97740 -33.80449 -32.35471 -31.52701 -30.07440 -28.74685 -27.88263 -26.23523 -24.96230 -24.26762 -23.22880 -22.83836 -21.98982 -19.59794 -19.04581 -18.17371 -17.63129 -17.15625 -16.55869 -16.30711 -15.97621 -15.65938 -15.16972 -15.11759 -14.95040 -14.36814 -13.73936 -13.60603 -13.40870 -13.13665 -12.99582 -12.98076 -12.48981 -12.34998 -11.76855 -11.47926 -11.38809 -11.28799 -11.13473 -10.97973 -10.82553 -10.45459 -10.31012 -10.21482 -9.98758 -9.70335 -9.52974 -9.33829 -8.71721 -8.23684 -7.98665 -7.03922 -5.96492 -3.31957 0.20934 0.65185 1.74037 2.08560 2.99263 3.20787 3.33312 3.42619 3.46214 3.57163 3.89520 3.97174 4.06284 4.51698 4.59585 4.67640 4.73049 4.89567 5.05545 5.18154 5.25217 5.33274 5.35987 5.68173 5.70233 5.83131 5.86818 5.91347 5.96097 6.06212 6.12894 6.20594 6.26454 6.37558 6.41073 6.45087 6.54109 6.88353 7.08833 7.11059 7.33557 7.36612 7.78718 8.31308 8.49377 8.65627 9.62083 10.35078 11.19835 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.003955 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.948112 B = 7077.923339 C = 7475.699099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.588 5.588 3 C 0.122 3.878 4 C 0.136 3.864 5 H 0.057 0.943 6 C -0.146 4.146 7 C 0.095 3.905 8 N -0.620 5.620 9 C -0.233 4.233 10 H 0.099 0.901 11 C 0.021 3.979 12 N -0.918 5.918 13 Si 0.896 3.104 14 H -0.289 1.289 15 H -0.305 1.305 16 H -0.271 1.271 17 C 0.591 3.409 18 O -0.550 6.550 19 C -0.256 4.256 20 C 0.113 3.887 21 N -0.304 5.304 22 N -0.251 5.251 23 C 0.064 3.936 24 C 0.023 3.977 25 N -0.447 5.447 26 C 0.171 3.829 27 C 0.086 3.914 28 H 0.046 0.954 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.207 0.793 39 H 0.181 0.819 40 H 0.185 0.815 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 -13.177 6.691 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.318 5.318 3 C -0.002 4.002 4 C 0.028 3.972 5 H 0.075 0.925 6 C -0.185 4.185 7 C -0.030 4.030 8 N -0.348 5.348 9 C -0.359 4.359 10 H 0.116 0.884 11 C -0.177 4.177 12 N -0.562 5.562 13 Si 0.729 3.271 14 H -0.216 1.216 15 H -0.233 1.233 16 H -0.197 1.197 17 C 0.379 3.621 18 O -0.430 6.430 19 C -0.274 4.274 20 C -0.065 4.065 21 N -0.128 5.128 22 N -0.018 5.018 23 C -0.064 4.064 24 C -0.118 4.118 25 N -0.158 5.158 26 C -0.009 4.009 27 C -0.037 4.037 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.223 0.777 39 H 0.198 0.802 40 H 0.202 0.798 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.136 -14.400 6.326 16.882 hybrid contribution -0.216 1.701 0.049 1.715 sum 5.920 -12.699 6.374 15.393 Atomic orbital electron populations 1.22440 0.78985 1.06675 1.00350 1.47526 1.07472 1.05375 1.71476 1.21855 0.96549 0.83955 0.97814 1.22649 0.88741 0.94423 0.91345 0.92524 1.23579 0.97689 0.98024 0.99170 1.22871 0.90055 0.95244 0.94806 1.46316 1.02121 1.38844 1.47520 1.18778 0.78567 0.97754 1.40820 0.88368 1.24943 0.94981 0.97810 0.99954 1.69737 1.06781 1.32206 1.47523 0.86717 0.76682 0.85574 0.78177 1.21621 1.23294 1.19698 1.16946 0.86324 0.82267 0.76551 1.90759 1.13243 1.87444 1.51508 1.19839 1.00533 0.96096 1.10945 1.24403 0.93274 0.92507 0.96295 1.77673 1.10635 1.11831 1.12631 1.46167 1.15736 1.10015 1.29927 1.22614 1.01582 0.86306 0.95935 1.22398 0.90019 1.00666 0.98759 1.68247 1.26660 1.01140 1.19768 1.23172 0.94314 0.94067 0.89338 1.20302 0.92739 0.90472 1.00162 0.93596 0.86483 0.91732 0.89483 0.90464 0.90212 0.92086 0.93548 0.94096 0.92712 0.77710 0.80232 0.79814 0.79247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 8.11 59.85 0.49 1.40 16 2 N -0.59 -9.85 2.89 -183.07 -0.53 -10.38 16 3 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 4 C 0.14 2.59 4.48 -66.86 -0.30 2.29 16 5 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 6 C -0.15 -2.51 7.86 -25.81 -0.20 -2.71 16 7 C 0.09 1.97 7.37 -2.97 -0.02 1.95 16 8 N -0.62 -14.21 3.27 -170.75 -0.56 -14.77 16 9 C -0.23 -6.10 9.57 -15.06 -0.14 -6.24 16 10 H 0.10 2.65 5.60 -52.49 -0.29 2.36 16 11 C 0.02 0.59 5.50 -17.43 -0.10 0.50 16 12 N -0.92 -27.12 13.97 55.49 0.78 -26.34 16 13 Si 0.90 22.15 24.73 -169.99 -4.20 17.95 16 14 H -0.29 -7.15 7.10 56.52 0.40 -6.75 16 15 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 16 H -0.27 -6.39 6.52 56.52 0.37 -6.02 16 17 C 0.59 10.04 7.50 -12.79 -0.10 9.94 16 18 O -0.55 -10.41 16.77 5.20 0.09 -10.32 16 19 C -0.26 -3.90 5.31 -104.75 -0.56 -4.45 16 20 C 0.11 1.51 9.71 -17.10 -0.17 1.34 16 21 N -0.30 -4.20 12.60 30.76 0.39 -3.82 16 22 N -0.25 -3.30 3.91 -10.51 -0.04 -3.34 16 23 C 0.06 0.61 11.24 -16.59 -0.19 0.42 16 24 C 0.02 0.21 11.07 -17.99 -0.20 0.01 16 25 N -0.45 -5.35 10.44 -13.26 -0.14 -5.48 16 26 C 0.17 2.26 11.31 -17.01 -0.19 2.07 16 27 C 0.09 1.24 6.79 -84.06 -0.57 0.67 16 28 H 0.05 0.57 7.32 -51.93 -0.38 0.19 16 29 H 0.12 2.25 4.99 -51.93 -0.26 1.99 16 30 H 0.06 1.01 5.98 -51.93 -0.31 0.70 16 31 H 0.09 1.49 8.02 -51.93 -0.42 1.08 16 32 H 0.08 1.23 7.60 -51.93 -0.39 0.83 16 33 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 1.02 3.44 -51.93 -0.18 0.85 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.21 2.12 6.45 -52.48 -0.34 1.78 16 39 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.18 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -33.65 334.75 -6.14 -39.80 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.70 Total: 2.42 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -2.27 Total: 9.23 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.11 Total: -64.12 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.20 Total: 17.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.65 -6.14 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.202 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds