Wall clock time and date at job start Tue Mar 31 2020 04:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00389 * 2 1 4 4 C 1.53005 * 109.46828 * 262.58200 * 3 2 1 5 5 H 1.08996 * 112.96665 * 310.80477 * 4 3 2 6 6 C 1.53942 * 113.76554 * 179.12579 * 4 3 2 7 7 C 1.53946 * 86.28969 * 222.09101 * 6 4 3 8 8 N 1.47579 * 113.76866 * 82.63222 * 4 3 2 9 9 C 1.36938 * 134.49467 * 318.93865 * 8 4 3 10 10 H 1.08000 * 119.99608 * 337.75282 * 9 8 4 11 11 C 1.38813 * 120.00198 * 157.75087 * 9 8 4 12 12 N 1.31610 * 119.99999 * 168.78049 * 11 9 8 13 13 Si 1.86799 * 119.99771 * 348.77871 * 11 9 8 14 14 H 1.48497 * 109.47170 * 84.52913 * 13 11 9 15 15 H 1.48505 * 109.46861 * 204.52791 * 13 11 9 16 16 H 1.48502 * 109.47442 * 324.52808 * 13 11 9 17 17 C 1.34785 * 119.99711 * 179.97438 * 2 1 3 18 18 O 1.21686 * 119.99638 * 183.71137 * 17 2 1 19 19 C 1.46810 * 119.99922 * 3.71320 * 17 2 1 20 20 C 1.40405 * 126.54206 * 320.66618 * 19 17 2 21 21 N 1.30973 * 108.76704 * 180.02562 * 20 19 17 22 22 N 1.39707 * 109.48736 * 359.97438 * 21 20 19 23 23 C 1.36363 * 133.19373 * 180.02562 * 22 21 20 24 24 C 1.35290 * 119.80727 * 179.97438 * 23 22 21 25 25 N 1.33250 * 121.27384 * 0.02562 * 24 23 22 26 26 C 1.31409 * 121.07678 * 359.97438 * 25 24 23 27 27 C 1.36821 * 107.96947 * 0.02562 * 22 21 20 28 28 H 1.08994 * 109.47289 * 265.43587 * 1 2 3 29 29 H 1.09001 * 109.46757 * 25.43905 * 1 2 3 30 30 H 1.09002 * 109.47258 * 145.43512 * 1 2 3 31 31 H 1.09000 * 109.46603 * 22.58048 * 3 2 1 32 32 H 1.09001 * 109.47316 * 142.58324 * 3 2 1 33 33 H 1.09002 * 113.74326 * 336.43715 * 6 4 3 34 34 H 1.08999 * 113.74522 * 107.64139 * 6 4 3 35 35 H 1.09006 * 113.76890 * 137.91082 * 7 6 4 36 36 H 1.09000 * 113.77010 * 269.19729 * 7 6 4 37 37 H 0.97000 * 120.00369 * 179.97438 * 12 11 9 38 38 H 1.08004 * 125.61818 * 0.06444 * 20 19 17 39 39 H 1.07997 * 120.09148 * 359.95978 * 23 22 21 40 40 H 1.08004 * 119.36455 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.17630 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.6139 1.6171 -1.4305 5 1 3.0972 0.7877 -1.9468 6 6 3.3759 2.9496 -1.5477 7 6 2.5260 3.2100 -2.8046 8 7 1.5502 2.2717 -2.2168 9 6 0.2002 2.0838 -2.3482 10 1 -0.2386 1.1284 -2.1012 11 6 -0.6043 3.1214 -2.7988 12 7 -1.8546 2.8860 -3.1359 13 14 0.0876 4.8518 -2.9269 14 1 0.7903 5.0091 -4.2255 15 1 -1.0214 5.8359 -2.8417 16 1 1.0438 5.0862 -1.8151 17 6 2.1389 -1.1673 0.0005 18 8 3.3538 -1.1684 0.0687 19 6 1.4070 -2.4374 -0.0813 20 6 0.1954 -2.7467 0.5572 21 7 -0.1443 -3.9726 0.2454 22 7 0.8189 -4.5210 -0.6051 23 6 0.9461 -5.7362 -1.2107 24 6 2.0158 -5.9853 -2.0006 25 7 2.9564 -5.0633 -2.2022 26 6 2.8764 -3.8783 -1.6398 27 6 1.7857 -3.5755 -0.8133 28 1 -0.3633 -0.0818 1.0243 29 1 -0.3633 0.9281 -0.4414 30 1 -0.3634 -0.8463 -0.5830 31 1 1.5575 2.0577 0.3946 32 1 3.0861 1.1752 0.6244 33 1 3.1754 3.6431 -0.7310 34 1 4.4398 2.8302 -1.7523 35 1 2.1592 4.2335 -2.8827 36 1 2.9833 2.8506 -3.7264 37 1 -2.4169 3.6111 -3.4504 38 1 -0.3646 -2.0829 1.1993 39 1 0.1951 -6.4976 -1.0598 40 1 2.1096 -6.9503 -2.4763 41 1 3.6473 -3.1420 -1.8130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:44 Heat of formation + Delta-G solvation = 144.405652 kcal Electronic energy + Delta-G solvation = -26490.548496 eV Core-core repulsion = 22795.954562 eV Total energy + Delta-G solvation = -3694.593935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.61833 -40.93355 -39.72374 -39.17239 -36.32698 -34.77448 -34.37378 -32.48847 -31.28625 -30.39013 -29.30031 -27.54170 -25.89545 -25.53488 -24.99389 -24.02650 -23.15661 -20.97040 -20.48427 -19.27578 -18.98923 -18.52488 -17.73514 -17.57127 -17.18611 -17.01907 -16.60447 -16.27923 -16.03364 -15.73399 -15.27384 -14.88091 -14.77589 -14.57330 -14.20890 -14.08261 -13.98058 -13.74861 -13.19289 -13.02350 -12.93911 -12.76264 -12.59221 -12.41268 -12.09388 -12.03844 -11.86825 -11.45913 -11.18963 -11.12728 -10.97708 -10.89481 -10.71332 -9.58777 -8.99696 -8.90782 -8.07018 -5.38145 -0.71615 -0.29713 0.83417 1.01121 1.35325 1.41230 1.50956 1.83635 2.16499 2.41330 2.49236 2.90316 2.98552 3.10873 3.22190 3.27292 3.65285 3.78436 3.83194 3.96596 4.14438 4.25679 4.33690 4.35040 4.40349 4.45156 4.56203 4.60004 4.68548 4.72097 4.83279 4.96101 4.99908 5.03292 5.05754 5.13895 5.36098 5.43410 5.54191 5.69659 6.11032 6.25816 6.46802 6.48474 6.63776 7.19610 7.55509 8.39848 9.12856 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.003955 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.948112 B = 7077.923339 C = 7475.699099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.593 5.593 3 C 0.125 3.875 4 C 0.134 3.866 5 H 0.045 0.955 6 C -0.122 4.122 7 C 0.081 3.919 8 N -0.642 5.642 9 C -0.207 4.207 10 H 0.082 0.918 11 C -0.039 4.039 12 N -0.965 5.965 13 Si 0.948 3.052 14 H -0.291 1.291 15 H -0.316 1.316 16 H -0.251 1.251 17 C 0.594 3.406 18 O -0.576 6.576 19 C -0.293 4.293 20 C 0.122 3.878 21 N -0.321 5.321 22 N -0.253 5.253 23 C 0.069 3.931 24 C 0.029 3.971 25 N -0.449 5.449 26 C 0.144 3.856 27 C 0.077 3.923 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.258 0.742 38 H 0.228 0.772 39 H 0.222 0.778 40 H 0.232 0.768 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -14.670 7.450 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.323 5.323 3 C 0.002 3.998 4 C 0.028 3.972 5 H 0.063 0.937 6 C -0.160 4.160 7 C -0.043 4.043 8 N -0.370 5.370 9 C -0.334 4.334 10 H 0.099 0.901 11 C -0.232 4.232 12 N -0.614 5.614 13 Si 0.780 3.220 14 H -0.219 1.219 15 H -0.245 1.245 16 H -0.176 1.176 17 C 0.383 3.617 18 O -0.458 6.458 19 C -0.311 4.311 20 C -0.056 4.056 21 N -0.144 5.144 22 N -0.020 5.020 23 C -0.060 4.060 24 C -0.114 4.114 25 N -0.160 5.160 26 C -0.034 4.034 27 C -0.046 4.046 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.244 0.756 39 H 0.239 0.761 40 H 0.248 0.752 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.413 -15.874 7.113 18.909 hybrid contribution -0.529 1.857 -0.267 1.949 sum 6.883 -14.018 6.846 17.051 Atomic orbital electron populations 1.22315 0.78527 1.04445 1.02206 1.47590 1.07766 1.05385 1.71524 1.21768 0.97196 0.84224 0.96594 1.22744 0.87568 0.95078 0.91818 0.93723 1.23443 0.98905 0.96287 0.97370 1.23084 0.90216 0.94149 0.96814 1.46601 1.01707 1.39685 1.49008 1.18834 0.80320 0.96761 1.37510 0.90109 1.25500 0.95351 1.01010 1.01389 1.69863 1.08260 1.32720 1.50521 0.85881 0.75912 0.81723 0.78527 1.21894 1.24502 1.17579 1.17144 0.86072 0.82766 0.75715 1.90724 1.14332 1.87872 1.52837 1.19731 1.01920 0.95910 1.13492 1.24711 0.92520 0.92605 0.95770 1.77627 1.11172 1.12129 1.13522 1.46496 1.15112 1.10813 1.29565 1.23522 1.02440 0.85653 0.94373 1.23236 0.88735 1.01461 0.97947 1.68251 1.27688 1.01019 1.19083 1.23068 0.94605 0.94928 0.90805 1.20438 0.93263 0.90785 1.00159 0.89929 0.90014 0.92089 0.89531 0.88942 0.88850 0.88693 0.94382 0.93487 0.93337 0.75562 0.76102 0.75212 0.79947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.12 8.11 127.77 1.04 3.16 16 2 N -0.59 -19.71 2.89 -851.33 -2.46 -22.17 16 3 C 0.13 4.15 5.21 86.38 0.45 4.60 16 4 C 0.13 4.97 4.48 45.09 0.20 5.17 16 5 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 6 C -0.12 -3.83 7.86 31.25 0.25 -3.59 16 7 C 0.08 3.25 7.37 86.48 0.64 3.89 16 8 N -0.64 -29.08 3.27 -694.15 -2.27 -31.35 16 9 C -0.21 -10.99 9.57 84.03 0.80 -10.18 16 10 H 0.08 4.52 5.60 -2.91 -0.02 4.51 16 11 C -0.04 -2.21 5.50 84.86 0.47 -1.74 16 12 N -0.97 -58.96 13.97 21.65 0.30 -58.66 16 13 Si 0.95 46.09 24.73 68.60 1.70 47.79 16 14 H -0.29 -14.09 7.10 99.48 0.71 -13.38 16 15 H -0.32 -15.77 7.11 99.48 0.71 -15.06 16 16 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 17 C 0.59 20.25 7.50 86.48 0.65 20.90 16 18 O -0.58 -21.97 16.77 -4.30 -0.07 -22.04 16 19 C -0.29 -8.93 5.31 -19.95 -0.11 -9.03 16 20 C 0.12 3.15 9.71 85.35 0.83 3.97 16 21 N -0.32 -8.47 12.60 -56.59 -0.71 -9.18 16 22 N -0.25 -6.26 3.91 -187.15 -0.73 -6.99 16 23 C 0.07 1.07 11.24 83.31 0.94 2.01 16 24 C 0.03 0.41 11.07 83.80 0.93 1.34 16 25 N -0.45 -10.03 10.44 -195.86 -2.05 -12.08 16 26 C 0.14 3.82 11.31 85.22 0.96 4.78 16 27 C 0.08 2.20 6.79 39.39 0.27 2.47 16 28 H 0.08 1.94 7.32 -2.39 -0.02 1.92 16 29 H 0.08 3.21 4.99 -2.39 -0.01 3.20 16 30 H 0.06 1.94 5.98 -2.39 -0.01 1.93 16 31 H 0.09 2.87 8.02 -2.39 -0.02 2.85 16 32 H 0.09 2.79 7.60 -2.39 -0.02 2.77 16 33 H 0.09 2.73 8.10 -2.39 -0.02 2.71 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.60 3.44 -2.38 -0.01 1.59 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 38 H 0.23 4.41 6.45 -2.91 -0.02 4.39 16 39 H 0.22 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.23 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.18 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -75.28 334.75 3.03 -72.25 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.02 Total: 14.68 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 8.31 Total: 27.75 kcal Atomic # 7 Polarization: -132.50 SS G_CDS: -7.92 Total: -140.43 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.07 Total: -22.04 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.70 Total: 47.79 kcal Total: -75.28 3.03 -72.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.660 kcal (2) G-P(sol) polarization free energy of solvation -75.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds