Wall clock time and date at job start Tue Mar 31 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00260 * 2 1 4 4 C 1.52993 * 109.47278 * 265.43381 * 3 2 1 5 5 H 1.08994 * 112.96560 * 295.32257 * 4 3 2 6 6 C 1.53951 * 113.76865 * 67.00078 * 4 3 2 7 7 C 1.53941 * 86.29198 * 137.90738 * 6 4 3 8 8 N 1.47582 * 113.77041 * 163.63855 * 4 3 2 9 9 C 1.36938 * 134.48743 * 41.07509 * 8 4 3 10 10 H 1.07994 * 120.00285 * 342.79931 * 9 8 4 11 11 C 1.38817 * 119.99923 * 162.80409 * 9 8 4 12 12 N 1.31617 * 120.00414 * 167.00663 * 11 9 8 13 13 Si 1.86800 * 119.99735 * 347.00302 * 11 9 8 14 14 H 1.48501 * 109.47096 * 86.62920 * 13 11 9 15 15 H 1.48501 * 109.47112 * 206.62806 * 13 11 9 16 16 H 1.48498 * 109.47288 * 326.62996 * 13 11 9 17 17 C 1.34784 * 119.99991 * 179.97438 * 2 1 3 18 18 O 1.21703 * 119.99826 * 184.78139 * 17 2 1 19 19 C 1.46663 * 119.99944 * 4.78028 * 17 2 1 20 20 C 1.40332 * 126.56314 * 340.57314 * 19 17 2 21 21 N 1.30997 * 108.78163 * 179.97438 * 20 19 17 22 22 N 1.39895 * 109.56149 * 359.97438 * 21 20 19 23 23 N 1.40024 * 132.52362 * 179.97438 * 22 21 20 24 24 C 1.30834 * 120.65854 * 180.02562 * 23 22 21 25 25 C 1.39735 * 120.97807 * 0.02562 * 24 23 22 26 26 C 1.36560 * 119.93675 * 0.02562 * 25 24 23 27 27 C 1.36762 * 107.87130 * 0.02562 * 22 21 20 28 28 H 1.09004 * 109.46698 * 266.09700 * 1 2 3 29 29 H 1.08995 * 109.47213 * 26.09250 * 1 2 3 30 30 H 1.08999 * 109.47274 * 146.09613 * 1 2 3 31 31 H 1.09007 * 109.46916 * 25.43909 * 3 2 1 32 32 H 1.09000 * 109.47241 * 145.43013 * 3 2 1 33 33 H 1.09001 * 113.74058 * 252.25576 * 6 4 3 34 34 H 1.08998 * 113.74185 * 23.45030 * 6 4 3 35 35 H 1.09003 * 113.76665 * 90.69139 * 7 6 4 36 36 H 1.08994 * 113.77322 * 221.97995 * 7 6 4 37 37 H 0.96995 * 119.99838 * 179.97438 * 12 11 9 38 38 H 1.08000 * 125.60763 * 359.71025 * 20 19 17 39 39 H 1.08004 * 119.51460 * 180.02562 * 24 23 22 40 40 H 1.07994 * 120.02814 * 179.97438 * 25 24 23 41 41 H 1.08004 * 120.44116 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5520 1.6530 -1.4378 5 1 3.2411 0.9515 -1.9079 6 6 1.3293 1.9985 -2.3072 7 6 2.1734 3.1634 -2.8551 8 7 2.9425 3.0673 -1.5966 9 6 3.7086 3.9387 -0.8692 10 1 3.9464 3.7184 0.1609 11 6 4.1795 5.1052 -1.4561 12 7 4.6910 6.0588 -0.7069 13 14 4.0873 5.3216 -3.3092 14 1 2.7618 5.8813 -3.6769 15 1 5.1573 6.2507 -3.7530 16 1 4.2693 4.0047 -3.9710 17 6 2.1389 -1.1673 0.0005 18 8 3.3527 -1.1690 0.0884 19 6 1.4094 -2.4352 -0.1048 20 6 0.0476 -2.6410 0.1643 21 7 -0.2373 -3.9028 -0.0426 22 7 0.9145 -4.5815 -0.4548 23 7 1.1538 -5.9177 -0.7982 24 6 2.3487 -6.3103 -1.1582 25 6 3.4164 -5.4103 -1.2096 26 6 3.2194 -4.0997 -0.8804 27 6 1.9413 -3.6790 -0.4961 28 1 -0.3633 -0.0700 1.0253 29 1 -0.3633 0.9229 -0.4520 30 1 -0.3634 -0.8529 -0.5732 31 1 1.5755 2.0474 0.4415 32 1 3.1120 1.1602 0.5831 33 1 1.0924 1.2395 -3.0527 34 1 0.4589 2.3168 -1.7335 35 1 2.7525 2.9070 -3.7424 36 1 1.6183 4.0950 -2.9641 37 1 5.0204 6.8738 -1.1171 38 1 -0.6499 -1.8845 0.4924 39 1 2.5124 -7.3454 -1.4197 40 1 4.3966 -5.7511 -1.5086 41 1 4.0388 -3.3970 -0.9176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:32 Heat of formation + Delta-G solvation = 196.244734 kcal Electronic energy + Delta-G solvation = -25908.868600 eV Core-core repulsion = 22216.522576 eV Total energy + Delta-G solvation = -3692.346024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.21439 -39.71289 -38.33389 -37.87736 -35.32936 -33.57058 -32.23233 -31.63341 -30.32342 -28.50953 -28.32326 -26.70191 -25.05532 -24.28157 -23.07988 -22.83865 -21.91419 -19.78697 -19.13045 -18.36996 -17.65901 -16.91716 -16.71594 -16.25298 -16.11609 -15.77665 -15.43478 -15.07034 -14.72735 -14.24833 -13.86174 -13.77399 -13.21951 -13.13015 -12.99475 -12.87069 -12.84264 -12.38179 -11.94799 -11.81770 -11.76348 -11.53150 -11.20949 -11.05261 -10.82880 -10.69247 -10.21631 -10.07838 -10.00526 -9.92356 -9.76343 -9.37557 -8.88038 -8.55479 -8.31431 -7.08313 -5.87801 -3.22517 -0.13670 0.61384 1.03987 1.86920 2.61210 3.01614 3.36200 3.38579 3.46901 3.47699 3.79635 3.98928 4.14072 4.18365 4.51687 4.57227 4.71579 4.75952 4.84930 4.88779 5.05290 5.24723 5.27875 5.36852 5.45685 5.51266 5.57142 5.67296 5.74225 5.82186 5.88306 5.95368 6.13411 6.26360 6.37090 6.44081 6.53478 6.62746 6.93848 7.04508 7.05396 7.28088 7.53057 8.31120 8.39668 8.73034 9.67840 10.34087 11.29299 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024132 B = 0.003114 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.991490 B = 8989.325255 C = 9353.536784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.121 3.879 4 C 0.132 3.868 5 H 0.052 0.948 6 C -0.144 4.144 7 C 0.097 3.903 8 N -0.615 5.615 9 C -0.226 4.226 10 H 0.098 0.902 11 C 0.017 3.983 12 N -0.921 5.921 13 Si 0.884 3.116 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.271 1.271 17 C 0.591 3.409 18 O -0.541 6.541 19 C -0.258 4.258 20 C 0.078 3.922 21 N -0.256 5.256 22 N -0.174 5.174 23 N -0.219 5.219 24 C 0.119 3.881 25 C -0.162 4.162 26 C -0.022 4.022 27 C 0.103 3.897 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.262 0.738 38 H 0.222 0.778 39 H 0.207 0.793 40 H 0.161 0.839 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 -23.753 -1.255 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.332 5.332 3 C -0.001 4.001 4 C 0.025 3.975 5 H 0.069 0.931 6 C -0.182 4.182 7 C -0.028 4.028 8 N -0.344 5.344 9 C -0.353 4.353 10 H 0.116 0.884 11 C -0.181 4.181 12 N -0.567 5.567 13 Si 0.714 3.286 14 H -0.213 1.213 15 H -0.227 1.227 16 H -0.196 1.196 17 C 0.380 3.620 18 O -0.419 6.419 19 C -0.275 4.275 20 C -0.102 4.102 21 N -0.081 5.081 22 N -0.040 5.040 23 N -0.031 5.031 24 C -0.074 4.074 25 C -0.187 4.187 26 C -0.050 4.050 27 C -0.023 4.023 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.238 0.762 39 H 0.223 0.777 40 H 0.178 0.822 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.016 -24.681 -0.889 26.651 hybrid contribution 1.507 1.255 -1.265 2.334 sum -8.509 -23.426 -2.154 25.017 Atomic orbital electron populations 1.22440 0.80374 1.04202 1.01541 1.47529 1.06623 1.06020 1.73057 1.21712 0.97439 0.82490 0.98498 1.22505 0.93346 0.88266 0.93430 0.93099 1.23598 0.97537 0.98055 0.99043 1.22803 0.92106 0.97152 0.90727 1.46586 1.58205 1.05821 1.23743 1.18755 1.24678 0.97939 0.93918 0.88403 1.24921 0.98754 0.96839 0.97568 1.69737 1.45513 1.06971 1.34433 0.86814 0.76816 0.77436 0.87510 1.21338 1.22749 1.19595 1.16902 0.86435 0.82143 0.76560 1.90803 1.13349 1.87120 1.50626 1.19888 0.94471 0.93604 1.19505 1.25140 0.95319 0.93513 0.96217 1.77714 1.01546 1.05717 1.23148 1.50963 1.06823 1.03863 1.42365 1.75863 1.21864 0.90787 1.14604 1.24306 0.88032 1.02075 0.92976 1.21742 1.01463 0.93226 1.02267 1.21214 0.95134 0.96938 0.91678 1.19736 0.90851 0.90943 1.00784 0.92135 0.89996 0.90251 0.89502 0.89879 0.92649 0.90213 0.93923 0.92572 0.92792 0.76197 0.77665 0.82176 0.81199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 8.60 59.84 0.51 1.05 16 2 N -0.60 -8.33 2.80 -183.13 -0.51 -8.84 16 3 C 0.12 2.09 5.28 -4.04 -0.02 2.07 16 4 C 0.13 2.57 4.54 -66.86 -0.30 2.27 16 5 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 6 C -0.14 -2.40 7.26 -25.79 -0.19 -2.58 16 7 C 0.10 2.04 5.80 -2.85 -0.02 2.03 16 8 N -0.62 -14.80 3.34 -169.74 -0.57 -15.37 16 9 C -0.23 -6.43 10.94 -15.06 -0.16 -6.59 16 10 H 0.10 2.93 8.06 -52.49 -0.42 2.51 16 11 C 0.02 0.49 5.50 -17.43 -0.10 0.39 16 12 N -0.92 -28.83 13.97 55.49 0.78 -28.05 16 13 Si 0.88 22.84 25.17 -169.99 -4.28 18.56 16 14 H -0.29 -7.18 6.95 56.52 0.39 -6.78 16 15 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 16 H -0.27 -6.81 5.89 56.52 0.33 -6.48 16 17 C 0.59 9.06 7.60 -12.86 -0.10 8.96 16 18 O -0.54 -10.10 15.70 5.19 0.08 -10.01 16 19 C -0.26 -3.40 5.88 -104.73 -0.62 -4.01 16 20 C 0.08 0.85 9.68 -17.12 -0.17 0.69 16 21 N -0.26 -3.34 12.61 30.75 0.39 -2.96 16 22 N -0.17 -2.25 5.25 32.44 0.17 -2.08 16 23 N -0.22 -2.33 11.96 30.60 0.37 -1.96 16 24 C 0.12 0.72 11.28 -17.42 -0.20 0.52 16 25 C -0.16 -0.99 10.04 -39.63 -0.40 -1.39 16 26 C -0.02 -0.22 9.80 -39.55 -0.39 -0.61 16 27 C 0.10 1.31 6.83 -84.05 -0.57 0.74 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 29 H 0.08 0.72 6.58 -51.93 -0.34 0.38 16 30 H 0.08 0.63 4.74 -51.93 -0.25 0.38 16 31 H 0.09 1.46 8.04 -51.93 -0.42 1.04 16 32 H 0.08 1.64 7.50 -51.93 -0.39 1.25 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.19 6.97 -51.93 -0.36 0.82 16 35 H 0.04 0.92 6.57 -51.93 -0.34 0.58 16 36 H 0.06 1.20 7.08 -51.93 -0.37 0.83 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 38 H 0.22 1.59 4.93 -52.49 -0.26 1.33 16 39 H 0.21 0.22 8.06 -52.48 -0.42 -0.20 16 40 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.17 1.71 7.40 -52.48 -0.39 1.33 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -38.01 335.99 -6.06 -44.07 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.84 Total: -1.96 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.71 Total: 3.54 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.62 Total: -59.25 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.28 Total: 18.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -38.01 -6.06 -44.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.318 kcal (2) G-P(sol) polarization free energy of solvation -38.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds