Wall clock time and date at job start Tue Mar 31 2020 04:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00260 * 2 1 4 4 C 1.52993 * 109.47278 * 265.43381 * 3 2 1 5 5 H 1.08994 * 112.96560 * 295.32257 * 4 3 2 6 6 C 1.53951 * 113.76865 * 67.00078 * 4 3 2 7 7 C 1.53941 * 86.29198 * 137.90738 * 6 4 3 8 8 N 1.47582 * 113.77041 * 163.63855 * 4 3 2 9 9 C 1.36938 * 134.48743 * 41.07509 * 8 4 3 10 10 H 1.07994 * 120.00285 * 342.79931 * 9 8 4 11 11 C 1.38817 * 119.99923 * 162.80409 * 9 8 4 12 12 N 1.31617 * 120.00414 * 167.00663 * 11 9 8 13 13 Si 1.86800 * 119.99735 * 347.00302 * 11 9 8 14 14 H 1.48501 * 109.47096 * 86.62920 * 13 11 9 15 15 H 1.48501 * 109.47112 * 206.62806 * 13 11 9 16 16 H 1.48498 * 109.47288 * 326.62996 * 13 11 9 17 17 C 1.34784 * 119.99991 * 179.97438 * 2 1 3 18 18 O 1.21703 * 119.99826 * 184.78139 * 17 2 1 19 19 C 1.46663 * 119.99944 * 4.78028 * 17 2 1 20 20 C 1.40332 * 126.56314 * 340.57314 * 19 17 2 21 21 N 1.30997 * 108.78163 * 179.97438 * 20 19 17 22 22 N 1.39895 * 109.56149 * 359.97438 * 21 20 19 23 23 N 1.40024 * 132.52362 * 179.97438 * 22 21 20 24 24 C 1.30834 * 120.65854 * 180.02562 * 23 22 21 25 25 C 1.39735 * 120.97807 * 0.02562 * 24 23 22 26 26 C 1.36560 * 119.93675 * 0.02562 * 25 24 23 27 27 C 1.36762 * 107.87130 * 0.02562 * 22 21 20 28 28 H 1.09004 * 109.46698 * 266.09700 * 1 2 3 29 29 H 1.08995 * 109.47213 * 26.09250 * 1 2 3 30 30 H 1.08999 * 109.47274 * 146.09613 * 1 2 3 31 31 H 1.09007 * 109.46916 * 25.43909 * 3 2 1 32 32 H 1.09000 * 109.47241 * 145.43013 * 3 2 1 33 33 H 1.09001 * 113.74058 * 252.25576 * 6 4 3 34 34 H 1.08998 * 113.74185 * 23.45030 * 6 4 3 35 35 H 1.09003 * 113.76665 * 90.69139 * 7 6 4 36 36 H 1.08994 * 113.77322 * 221.97995 * 7 6 4 37 37 H 0.96995 * 119.99838 * 179.97438 * 12 11 9 38 38 H 1.08000 * 125.60763 * 359.71025 * 20 19 17 39 39 H 1.08004 * 119.51460 * 180.02562 * 24 23 22 40 40 H 1.07994 * 120.02814 * 179.97438 * 25 24 23 41 41 H 1.08004 * 120.44116 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5520 1.6530 -1.4378 5 1 3.2411 0.9515 -1.9079 6 6 1.3293 1.9985 -2.3072 7 6 2.1734 3.1634 -2.8551 8 7 2.9425 3.0673 -1.5966 9 6 3.7086 3.9387 -0.8692 10 1 3.9464 3.7184 0.1609 11 6 4.1795 5.1052 -1.4561 12 7 4.6910 6.0588 -0.7069 13 14 4.0873 5.3216 -3.3092 14 1 2.7618 5.8813 -3.6769 15 1 5.1573 6.2507 -3.7530 16 1 4.2693 4.0047 -3.9710 17 6 2.1389 -1.1673 0.0005 18 8 3.3527 -1.1690 0.0884 19 6 1.4094 -2.4352 -0.1048 20 6 0.0476 -2.6410 0.1643 21 7 -0.2373 -3.9028 -0.0426 22 7 0.9145 -4.5815 -0.4548 23 7 1.1538 -5.9177 -0.7982 24 6 2.3487 -6.3103 -1.1582 25 6 3.4164 -5.4103 -1.2096 26 6 3.2194 -4.0997 -0.8804 27 6 1.9413 -3.6790 -0.4961 28 1 -0.3633 -0.0700 1.0253 29 1 -0.3633 0.9229 -0.4520 30 1 -0.3634 -0.8529 -0.5732 31 1 1.5755 2.0474 0.4415 32 1 3.1120 1.1602 0.5831 33 1 1.0924 1.2395 -3.0527 34 1 0.4589 2.3168 -1.7335 35 1 2.7525 2.9070 -3.7424 36 1 1.6183 4.0950 -2.9641 37 1 5.0204 6.8738 -1.1171 38 1 -0.6499 -1.8845 0.4924 39 1 2.5124 -7.3454 -1.4197 40 1 4.3966 -5.7511 -1.5086 41 1 4.0388 -3.3970 -0.9176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:31 Heat of formation + Delta-G solvation = 167.222444 kcal Electronic energy + Delta-G solvation = -25910.127101 eV Core-core repulsion = 22216.522576 eV Total energy + Delta-G solvation = -3693.604525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.02711 -40.91502 -39.65991 -38.85496 -36.51318 -34.40076 -34.28433 -32.46205 -31.35197 -30.31765 -29.53865 -27.70835 -25.76218 -25.49748 -24.85803 -23.94077 -22.91287 -21.18677 -20.46903 -19.27561 -18.70548 -18.35206 -17.73251 -17.36166 -17.16684 -16.97474 -16.68163 -16.47798 -15.71923 -15.39577 -15.37552 -14.86410 -14.65132 -14.48868 -14.13570 -13.81935 -13.74871 -13.64217 -13.60988 -13.28670 -12.93509 -12.67085 -12.54625 -12.30513 -11.98748 -11.96133 -11.84618 -11.73356 -11.54432 -11.24168 -11.02039 -10.89441 -10.77070 -9.72426 -9.28952 -9.05544 -8.13157 -5.43842 -0.84014 -0.07884 0.30780 0.97346 1.29450 1.36738 1.43879 1.85748 1.96317 2.36200 2.42728 2.99563 3.13580 3.16706 3.30007 3.45299 3.58352 3.69772 3.81213 3.98497 4.10627 4.19240 4.27412 4.31035 4.31850 4.42211 4.58542 4.71145 4.73901 4.81945 4.85290 4.89660 4.92562 4.97591 5.04561 5.07386 5.15203 5.25896 5.49014 5.62135 6.14498 6.18391 6.32148 6.44573 6.55394 7.18615 7.46171 8.27748 9.08118 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024132 B = 0.003114 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.991490 B = 8989.325255 C = 9353.536784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.596 5.596 3 C 0.136 3.864 4 C 0.128 3.872 5 H 0.034 0.966 6 C -0.110 4.110 7 C 0.085 3.915 8 N -0.641 5.641 9 C -0.213 4.213 10 H 0.064 0.936 11 C -0.048 4.048 12 N -0.970 5.970 13 Si 0.947 3.053 14 H -0.270 1.270 15 H -0.308 1.308 16 H -0.261 1.261 17 C 0.590 3.410 18 O -0.589 6.589 19 C -0.292 4.292 20 C 0.096 3.904 21 N -0.289 5.289 22 N -0.187 5.187 23 N -0.254 5.254 24 C 0.135 3.865 25 C -0.119 4.119 26 C -0.067 4.067 27 C 0.098 3.902 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.260 0.740 38 H 0.254 0.746 39 H 0.263 0.737 40 H 0.207 0.793 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.830 -26.790 -3.189 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.327 5.327 3 C 0.012 3.988 4 C 0.022 3.978 5 H 0.051 0.949 6 C -0.148 4.148 7 C -0.039 4.039 8 N -0.369 5.369 9 C -0.341 4.341 10 H 0.081 0.919 11 C -0.241 4.241 12 N -0.619 5.619 13 Si 0.776 3.224 14 H -0.195 1.195 15 H -0.236 1.236 16 H -0.186 1.186 17 C 0.380 3.620 18 O -0.471 6.471 19 C -0.308 4.308 20 C -0.083 4.083 21 N -0.114 5.114 22 N -0.052 5.052 23 N -0.066 5.066 24 C -0.056 4.056 25 C -0.144 4.144 26 C -0.094 4.094 27 C -0.029 4.029 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.269 0.731 39 H 0.279 0.721 40 H 0.224 0.776 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.034 -27.773 -2.840 30.401 hybrid contribution 2.200 1.908 -0.637 2.981 sum -9.834 -25.865 -3.477 27.889 Atomic orbital electron populations 1.22793 0.77110 1.05621 1.03809 1.47510 1.08436 1.04245 1.72530 1.21290 0.96590 0.84337 0.96562 1.22661 0.94378 0.85497 0.95290 0.94883 1.23423 0.96329 0.96510 0.98528 1.23025 0.92471 0.99012 0.89383 1.46815 1.57746 1.07560 1.24825 1.18667 1.23762 0.98452 0.93238 0.91859 1.25618 0.99635 0.96837 1.01993 1.69888 1.48025 1.07745 1.36267 0.85795 0.77170 0.77461 0.82005 1.19544 1.23607 1.18582 1.17246 0.85992 0.83117 0.75626 1.90766 1.15514 1.87839 1.52981 1.19690 0.95498 0.92872 1.22760 1.25574 0.94766 0.93468 0.94509 1.77609 1.02620 1.06453 1.24680 1.51142 1.06639 1.04694 1.42752 1.75918 1.24435 0.89820 1.16475 1.25359 0.86342 1.04176 0.89742 1.22335 1.03360 0.91231 0.97442 1.21321 0.94122 0.98855 0.95116 1.20116 0.91863 0.91028 0.99915 0.89540 0.88792 0.88473 0.88880 0.93630 0.89261 0.87608 0.93908 0.92602 0.93082 0.73091 0.72113 0.77571 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 8.60 127.77 1.10 1.85 16 2 N -0.60 -16.18 2.80 -851.51 -2.38 -18.57 16 3 C 0.14 4.78 5.28 86.38 0.46 5.23 16 4 C 0.13 4.97 4.54 45.09 0.20 5.17 16 5 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 6 C -0.11 -3.31 7.26 31.25 0.23 -3.09 16 7 C 0.09 3.40 5.80 86.43 0.50 3.90 16 8 N -0.64 -30.87 3.34 -690.95 -2.31 -33.18 16 9 C -0.21 -12.51 10.94 84.03 0.92 -11.59 16 10 H 0.06 4.05 8.06 -2.91 -0.02 4.02 16 11 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 12 N -0.97 -63.03 13.97 21.65 0.30 -62.73 16 13 Si 0.95 47.74 25.17 68.60 1.73 49.46 16 14 H -0.27 -12.72 6.95 99.48 0.69 -12.03 16 15 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 16 H -0.26 -12.56 5.89 99.48 0.59 -11.97 16 17 C 0.59 18.47 7.60 86.44 0.66 19.13 16 18 O -0.59 -23.36 15.70 -4.36 -0.07 -23.43 16 19 C -0.29 -7.65 5.88 -19.94 -0.12 -7.77 16 20 C 0.10 2.00 9.68 85.33 0.83 2.83 16 21 N -0.29 -7.29 12.61 -56.63 -0.71 -8.01 16 22 N -0.19 -4.68 5.25 -51.28 -0.27 -4.95 16 23 N -0.25 -4.83 11.96 -57.11 -0.68 -5.52 16 24 C 0.14 1.09 11.28 85.20 0.96 2.05 16 25 C -0.12 -1.03 10.04 22.24 0.22 -0.81 16 26 C -0.07 -1.28 9.80 22.29 0.22 -1.06 16 27 C 0.10 2.48 6.83 39.42 0.27 2.75 16 28 H 0.09 0.95 7.66 -2.38 -0.02 0.93 16 29 H 0.09 1.28 6.58 -2.39 -0.02 1.27 16 30 H 0.10 1.22 4.74 -2.39 -0.01 1.21 16 31 H 0.09 3.12 8.04 -2.38 -0.02 3.10 16 32 H 0.05 1.92 7.50 -2.39 -0.02 1.90 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.11 2.68 6.97 -2.39 -0.02 2.66 16 35 H 0.04 1.73 6.57 -2.39 -0.02 1.72 16 36 H 0.06 2.24 7.08 -2.39 -0.02 2.23 16 37 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 38 H 0.25 2.98 4.93 -2.91 -0.01 2.97 16 39 H 0.26 -1.09 8.06 -2.91 -0.02 -1.11 16 40 H 0.21 -0.15 8.06 -2.91 -0.02 -0.18 16 41 H 0.16 3.35 7.40 -2.91 -0.02 3.33 16 Total: -1.00 -90.33 335.99 3.45 -86.88 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 0.94 Total: 3.87 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 6.91 Total: 16.16 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -6.06 Total: -132.95 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.73 Total: 49.46 kcal Total: -90.33 3.45 -86.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.104 kcal (2) G-P(sol) polarization free energy of solvation -90.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds