Wall clock time and date at job start Tue Mar 31 2020 04:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00349 * 2 1 4 4 C 1.52998 * 109.47083 * 275.33187 * 3 2 1 5 5 H 1.09002 * 112.96686 * 65.80802 * 4 3 2 6 6 C 1.53951 * 113.77046 * 294.12633 * 4 3 2 7 7 C 1.53944 * 86.29146 * 222.09296 * 6 4 3 8 8 N 1.47585 * 86.23954 * 23.54979 * 7 6 4 9 9 C 1.36940 * 134.48929 * 155.42365 * 8 7 6 10 10 H 1.08001 * 119.99674 * 185.16159 * 9 8 7 11 11 C 1.38806 * 120.00337 * 5.15900 * 9 8 7 12 12 N 1.31626 * 119.99740 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47017 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47623 * 119.99757 * 13 11 9 16 16 H 1.48501 * 109.47155 * 240.00297 * 13 11 9 17 17 C 1.34779 * 119.99849 * 180.02562 * 2 1 3 18 18 O 1.21702 * 120.00230 * 185.40995 * 17 2 1 19 19 C 1.46672 * 119.99953 * 5.39990 * 17 2 1 20 20 C 1.40331 * 126.56181 * 34.86661 * 19 17 2 21 21 N 1.30999 * 108.78558 * 179.81407 * 20 19 17 22 22 N 1.39904 * 109.55464 * 0.45376 * 21 20 19 23 23 N 1.40020 * 132.52024 * 179.73401 * 22 21 20 24 24 C 1.30843 * 120.65387 * 179.97438 * 23 22 21 25 25 C 1.39727 * 120.97836 * 0.02562 * 24 23 22 26 26 C 1.36559 * 119.94329 * 0.02562 * 25 24 23 27 27 C 1.36758 * 107.87419 * 359.71319 * 22 21 20 28 28 H 1.09003 * 109.47091 * 85.77165 * 1 2 3 29 29 H 1.08993 * 109.47518 * 205.77324 * 1 2 3 30 30 H 1.08998 * 109.47096 * 325.77585 * 1 2 3 31 31 H 1.08999 * 109.47024 * 155.33023 * 3 2 1 32 32 H 1.08999 * 109.46656 * 35.32935 * 3 2 1 33 33 H 1.09005 * 113.73820 * 107.74682 * 6 4 3 34 34 H 1.08993 * 113.83645 * 336.45744 * 6 4 3 35 35 H 1.08997 * 113.76926 * 137.90657 * 7 6 4 36 36 H 1.09001 * 113.77450 * 269.19655 * 7 6 4 37 37 H 0.97001 * 119.99393 * 180.02562 * 12 11 9 38 38 H 1.08002 * 125.60950 * 359.96345 * 20 19 17 39 39 H 1.08006 * 119.50537 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.02713 * 180.02562 * 25 24 23 41 41 H 1.07991 * 120.44523 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3365 1.7773 -1.4362 5 1 1.3808 2.0451 -1.8869 6 6 3.2146 0.8822 -2.3294 7 6 3.8158 2.1894 -2.8768 8 7 3.3846 2.8055 -1.6070 9 6 3.7928 3.8920 -0.8803 10 1 3.3538 4.0910 0.0862 11 6 4.7707 4.7376 -1.3857 12 7 5.3060 4.4947 -2.5634 13 14 5.3280 6.2193 -0.3941 14 1 4.5774 6.2687 0.8863 15 1 6.7817 6.1080 -0.1122 16 1 5.0673 7.4595 -1.1682 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1697 0.0988 19 6 1.4104 -2.4346 -0.1206 20 6 0.2485 -2.6628 -0.8739 21 7 -0.1039 -3.9169 -0.7362 22 7 0.7965 -4.5655 0.1158 23 7 0.8722 -5.8816 0.5877 24 6 1.8356 -6.2467 1.3943 25 6 2.8122 -5.3364 1.8065 26 6 2.7687 -4.0443 1.3666 27 6 1.7394 -3.6537 0.5027 28 1 -0.3633 0.0758 -1.0249 29 1 -0.3634 -0.9253 0.4468 30 1 -0.3633 0.8497 0.5780 31 1 3.1880 1.1163 0.4289 32 1 1.6531 2.0025 0.5943 33 1 2.6516 0.3141 -3.0700 34 1 3.9262 0.2700 -1.7754 35 1 4.8978 2.1559 -3.0038 36 1 3.2967 2.5788 -3.7526 37 1 5.9897 5.0854 -2.9165 38 1 -0.2686 -1.9262 -1.4710 39 1 1.8760 -7.2666 1.7474 40 1 3.6009 -5.6544 2.4724 41 1 3.5191 -3.3338 1.6804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:36 Heat of formation + Delta-G solvation = 179.283032 kcal Electronic energy + Delta-G solvation = -25919.665945 eV Core-core repulsion = 22226.584406 eV Total energy + Delta-G solvation = -3693.081538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.15604 -39.60064 -38.18724 -37.49060 -35.18716 -33.55553 -32.11803 -31.53177 -30.17443 -28.19533 -27.75297 -26.46166 -25.07086 -24.00962 -23.22379 -22.64552 -21.73207 -19.41895 -18.91396 -18.28820 -17.64166 -16.93458 -16.48768 -16.37195 -16.02597 -15.73220 -15.24248 -14.66914 -14.51097 -13.98023 -13.84565 -13.66124 -13.43912 -13.09567 -12.93065 -12.65142 -12.48117 -12.23687 -11.86983 -11.70701 -11.35417 -11.18964 -10.99323 -10.83681 -10.79737 -10.64593 -10.36317 -9.97671 -9.83562 -9.73162 -9.61238 -9.38988 -8.73476 -8.46461 -8.25463 -6.78807 -5.69891 -3.01428 -0.10655 0.65005 1.07295 1.95777 2.63377 3.11683 3.30656 3.42797 3.47593 3.50376 3.82763 4.01100 4.16093 4.20630 4.51591 4.54402 4.82184 4.90461 4.96979 5.11787 5.29617 5.41814 5.46094 5.48739 5.53336 5.64306 5.68531 5.70271 5.90112 5.98485 6.02159 6.17171 6.44311 6.60761 6.76716 6.82790 6.86929 6.97759 7.08428 7.35019 7.52652 7.63581 7.68077 8.05760 8.39533 9.11516 9.78073 10.69543 11.47822 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.002982 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.543701 B = 9388.745169 C = 9703.375032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.117 3.883 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.159 4.159 7 C 0.165 3.835 8 N -0.601 5.601 9 C -0.221 4.221 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.593 3.407 18 O -0.532 6.532 19 C -0.253 4.253 20 C 0.094 3.906 21 N -0.255 5.255 22 N -0.175 5.175 23 N -0.218 5.218 24 C 0.118 3.882 25 C -0.162 4.162 26 C -0.022 4.022 27 C 0.097 3.903 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.252 0.748 38 H 0.210 0.790 39 H 0.207 0.793 40 H 0.160 0.840 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 -20.566 8.841 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.335 5.335 3 C -0.006 4.006 4 C 0.020 3.980 5 H 0.060 0.940 6 C -0.197 4.197 7 C 0.039 3.961 8 N -0.327 5.327 9 C -0.348 4.348 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.380 3.620 18 O -0.409 6.409 19 C -0.270 4.270 20 C -0.086 4.086 21 N -0.079 5.079 22 N -0.042 5.042 23 N -0.030 5.030 24 C -0.075 4.075 25 C -0.187 4.187 26 C -0.050 4.050 27 C -0.029 4.029 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.226 0.774 39 H 0.223 0.777 40 H 0.178 0.822 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.823 -21.542 8.099 25.432 hybrid contribution 1.357 2.000 0.886 2.574 sum -9.466 -19.542 8.985 23.500 Atomic orbital electron populations 1.21971 0.80157 1.02961 1.01848 1.47580 1.06632 1.06143 1.73121 1.21857 0.97871 0.82038 0.98840 1.22562 0.93049 0.89478 0.92921 0.94032 1.23801 0.99516 0.97598 0.98805 1.22101 0.99370 0.86239 0.88354 1.46014 1.34405 1.29664 1.22610 1.19029 1.16991 1.00224 0.98581 0.90338 1.24793 0.99853 0.98983 0.96858 1.69857 1.30110 1.38920 1.17782 0.86092 0.78292 0.82696 0.78958 1.20494 1.21773 1.21862 1.16893 0.86425 0.82048 0.76586 1.90820 1.13232 1.86968 1.49912 1.19926 1.02191 0.94200 1.10706 1.24481 0.93841 0.93299 0.97026 1.77702 1.12114 1.06802 1.11316 1.50906 1.17968 1.04675 1.30628 1.75848 1.22310 0.91954 1.12877 1.24287 0.89676 1.01837 0.91708 1.21710 1.01052 0.93258 1.02704 1.21120 0.95199 0.97181 0.91509 1.19723 0.93244 0.90986 0.98939 0.92376 0.91121 0.90938 0.88698 0.91322 0.93893 0.89821 0.91630 0.95690 0.93786 0.77390 0.77710 0.82242 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.10 59.85 0.54 1.29 16 2 N -0.60 -8.71 2.80 -183.13 -0.51 -9.23 16 3 C 0.12 2.09 5.49 -4.04 -0.02 2.07 16 4 C 0.13 2.62 4.58 -66.74 -0.31 2.32 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.16 -3.30 7.30 -25.79 -0.19 -3.49 16 7 C 0.16 4.10 7.38 -2.97 -0.02 4.07 16 8 N -0.60 -15.61 3.58 -169.74 -0.61 -16.22 16 9 C -0.22 -6.20 10.52 -15.06 -0.16 -6.36 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -27.94 11.52 55.49 0.64 -27.30 16 13 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 C 0.59 9.31 7.10 -12.85 -0.09 9.22 16 18 O -0.53 -10.19 15.10 5.19 0.08 -10.11 16 19 C -0.25 -3.41 5.28 -104.73 -0.55 -3.97 16 20 C 0.09 1.10 9.71 -17.12 -0.17 0.93 16 21 N -0.25 -3.42 12.61 30.75 0.39 -3.03 16 22 N -0.17 -2.29 5.25 32.44 0.17 -2.12 16 23 N -0.22 -2.33 11.96 30.60 0.37 -1.97 16 24 C 0.12 0.71 11.28 -17.42 -0.20 0.52 16 25 C -0.16 -0.97 10.04 -39.63 -0.40 -1.37 16 26 C -0.02 -0.22 10.00 -39.55 -0.40 -0.61 16 27 C 0.10 1.23 6.83 -84.05 -0.57 0.65 16 28 H 0.06 0.50 7.46 -51.93 -0.39 0.11 16 29 H 0.07 0.63 5.82 -51.93 -0.30 0.33 16 30 H 0.07 0.66 8.00 -51.93 -0.42 0.25 16 31 H 0.09 1.98 7.21 -51.93 -0.37 1.61 16 32 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.86 6.88 -51.93 -0.36 1.51 16 35 H 0.07 1.80 7.40 -51.93 -0.38 1.41 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 38 H 0.21 1.76 6.54 -52.49 -0.34 1.41 16 39 H 0.21 0.22 8.06 -52.48 -0.42 -0.20 16 40 H 0.16 0.35 8.06 -52.48 -0.42 -0.07 16 41 H 0.17 1.57 7.91 -52.49 -0.42 1.15 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -37.36 345.73 -6.97 -44.33 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.05 Total: -1.90 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.62 Total: 4.94 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.44 Total: -59.87 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.36 -6.97 -44.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.616 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds