Wall clock time and date at job start Tue Mar 31 2020 04:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00349 * 2 1 4 4 C 1.52998 * 109.47083 * 275.33187 * 3 2 1 5 5 H 1.09002 * 112.96686 * 65.80802 * 4 3 2 6 6 C 1.53951 * 113.77046 * 294.12633 * 4 3 2 7 7 C 1.53944 * 86.29146 * 222.09296 * 6 4 3 8 8 N 1.47585 * 86.23954 * 23.54979 * 7 6 4 9 9 C 1.36940 * 134.48929 * 155.42365 * 8 7 6 10 10 H 1.08001 * 119.99674 * 185.16159 * 9 8 7 11 11 C 1.38806 * 120.00337 * 5.15900 * 9 8 7 12 12 N 1.31626 * 119.99740 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47017 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47623 * 119.99757 * 13 11 9 16 16 H 1.48501 * 109.47155 * 240.00297 * 13 11 9 17 17 C 1.34779 * 119.99849 * 180.02562 * 2 1 3 18 18 O 1.21702 * 120.00230 * 185.40995 * 17 2 1 19 19 C 1.46672 * 119.99953 * 5.39990 * 17 2 1 20 20 C 1.40331 * 126.56181 * 34.86661 * 19 17 2 21 21 N 1.30999 * 108.78558 * 179.81407 * 20 19 17 22 22 N 1.39904 * 109.55464 * 0.45376 * 21 20 19 23 23 N 1.40020 * 132.52024 * 179.73401 * 22 21 20 24 24 C 1.30843 * 120.65387 * 179.97438 * 23 22 21 25 25 C 1.39727 * 120.97836 * 0.02562 * 24 23 22 26 26 C 1.36559 * 119.94329 * 0.02562 * 25 24 23 27 27 C 1.36758 * 107.87419 * 359.71319 * 22 21 20 28 28 H 1.09003 * 109.47091 * 85.77165 * 1 2 3 29 29 H 1.08993 * 109.47518 * 205.77324 * 1 2 3 30 30 H 1.08998 * 109.47096 * 325.77585 * 1 2 3 31 31 H 1.08999 * 109.47024 * 155.33023 * 3 2 1 32 32 H 1.08999 * 109.46656 * 35.32935 * 3 2 1 33 33 H 1.09005 * 113.73820 * 107.74682 * 6 4 3 34 34 H 1.08993 * 113.83645 * 336.45744 * 6 4 3 35 35 H 1.08997 * 113.76926 * 137.90657 * 7 6 4 36 36 H 1.09001 * 113.77450 * 269.19655 * 7 6 4 37 37 H 0.97001 * 119.99393 * 180.02562 * 12 11 9 38 38 H 1.08002 * 125.60950 * 359.96345 * 20 19 17 39 39 H 1.08006 * 119.50537 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.02713 * 180.02562 * 25 24 23 41 41 H 1.07991 * 120.44523 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3365 1.7773 -1.4362 5 1 1.3808 2.0451 -1.8869 6 6 3.2146 0.8822 -2.3294 7 6 3.8158 2.1894 -2.8768 8 7 3.3846 2.8055 -1.6070 9 6 3.7928 3.8920 -0.8803 10 1 3.3538 4.0910 0.0862 11 6 4.7707 4.7376 -1.3857 12 7 5.3060 4.4947 -2.5634 13 14 5.3280 6.2193 -0.3941 14 1 4.5774 6.2687 0.8863 15 1 6.7817 6.1080 -0.1122 16 1 5.0673 7.4595 -1.1682 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1697 0.0988 19 6 1.4104 -2.4346 -0.1206 20 6 0.2485 -2.6628 -0.8739 21 7 -0.1039 -3.9169 -0.7362 22 7 0.7965 -4.5655 0.1158 23 7 0.8722 -5.8816 0.5877 24 6 1.8356 -6.2467 1.3943 25 6 2.8122 -5.3364 1.8065 26 6 2.7687 -4.0443 1.3666 27 6 1.7394 -3.6537 0.5027 28 1 -0.3633 0.0758 -1.0249 29 1 -0.3634 -0.9253 0.4468 30 1 -0.3633 0.8497 0.5780 31 1 3.1880 1.1163 0.4289 32 1 1.6531 2.0025 0.5943 33 1 2.6516 0.3141 -3.0700 34 1 3.9262 0.2700 -1.7754 35 1 4.8978 2.1559 -3.0038 36 1 3.2967 2.5788 -3.7526 37 1 5.9897 5.0854 -2.9165 38 1 -0.2686 -1.9262 -1.4710 39 1 1.8760 -7.2666 1.7474 40 1 3.6009 -5.6544 2.4724 41 1 3.5191 -3.3338 1.6804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:35 Heat of formation + Delta-G solvation = 152.456095 kcal Electronic energy + Delta-G solvation = -25920.829248 eV Core-core repulsion = 22226.584406 eV Total energy + Delta-G solvation = -3694.244841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.98128 -40.84027 -39.37377 -38.78851 -36.42517 -34.31929 -34.17583 -32.34018 -31.21533 -29.82317 -29.39690 -27.49062 -25.77541 -25.32364 -25.03351 -23.77624 -22.92080 -20.87046 -20.38318 -19.16274 -18.64960 -18.31690 -17.64931 -17.42052 -16.96138 -16.91193 -16.56385 -16.35111 -15.76838 -15.29528 -15.12133 -14.94247 -14.51047 -14.09567 -13.92675 -13.76612 -13.67681 -13.50704 -13.33106 -12.98524 -12.89951 -12.57341 -12.55246 -12.46670 -12.22268 -11.94689 -11.80118 -11.55039 -11.52671 -11.22562 -10.91364 -10.83907 -10.75958 -9.64775 -9.24446 -8.85258 -7.86949 -5.19547 -0.80079 -0.04605 0.32859 1.02775 1.46030 1.47885 1.57687 1.89840 1.99406 2.27049 2.52033 3.11496 3.31993 3.33977 3.42946 3.50138 3.60030 3.82896 3.96147 4.03108 4.17576 4.28818 4.32936 4.36332 4.38182 4.51696 4.71205 4.80862 4.81839 4.87449 4.90609 4.95369 5.04262 5.09444 5.13533 5.18232 5.25868 5.54087 5.58355 5.76864 5.96708 6.16745 6.35047 6.47123 6.94672 7.23106 7.64895 8.61859 9.31533 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.002982 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.543701 B = 9388.745169 C = 9703.375032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.132 3.868 4 C 0.136 3.864 5 H 0.065 0.935 6 C -0.134 4.134 7 C 0.160 3.840 8 N -0.629 5.629 9 C -0.224 4.224 10 H 0.089 0.911 11 C -0.074 4.074 12 N -0.958 5.958 13 Si 0.978 3.022 14 H -0.261 1.261 15 H -0.296 1.296 16 H -0.293 1.293 17 C 0.595 3.405 18 O -0.579 6.579 19 C -0.287 4.287 20 C 0.109 3.891 21 N -0.288 5.288 22 N -0.189 5.189 23 N -0.255 5.255 24 C 0.134 3.866 25 C -0.119 4.119 26 C -0.066 4.066 27 C 0.095 3.905 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.021 0.979 37 H 0.246 0.754 38 H 0.236 0.764 39 H 0.263 0.737 40 H 0.208 0.792 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 -22.615 10.779 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.330 5.330 3 C 0.008 3.992 4 C 0.030 3.970 5 H 0.082 0.918 6 C -0.172 4.172 7 C 0.034 3.966 8 N -0.356 5.356 9 C -0.352 4.352 10 H 0.107 0.893 11 C -0.267 4.267 12 N -0.608 5.608 13 Si 0.806 3.194 14 H -0.185 1.185 15 H -0.224 1.224 16 H -0.220 1.220 17 C 0.384 3.616 18 O -0.459 6.459 19 C -0.304 4.304 20 C -0.071 4.071 21 N -0.113 5.113 22 N -0.054 5.054 23 N -0.067 5.067 24 C -0.057 4.057 25 C -0.144 4.144 26 C -0.093 4.093 27 C -0.032 4.032 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.252 0.748 39 H 0.278 0.722 40 H 0.225 0.775 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.479 -23.626 10.057 28.549 hybrid contribution 1.873 2.365 0.399 3.043 sum -10.606 -21.261 10.455 25.958 Atomic orbital electron populations 1.22265 0.77116 1.04324 1.03684 1.47557 1.08314 1.04510 1.72663 1.21409 0.97041 0.83926 0.96843 1.22721 0.92542 0.87152 0.94613 0.91783 1.23504 0.98995 0.95852 0.98862 1.22022 0.97319 0.88814 0.88445 1.46354 1.36375 1.30034 1.22804 1.19472 1.16399 1.00271 0.99074 0.89328 1.25673 1.00614 1.02202 0.98167 1.70056 1.30998 1.40045 1.19699 0.85013 0.77362 0.78839 0.78170 1.18463 1.22366 1.22029 1.17202 0.85937 0.82932 0.75509 1.90787 1.15313 1.87656 1.52165 1.19704 1.03659 0.93596 1.13433 1.24824 0.92947 0.93216 0.96153 1.77590 1.13458 1.07495 1.12749 1.51075 1.17922 1.05547 1.30826 1.75913 1.24817 0.91006 1.14992 1.25357 0.87550 1.03865 0.88938 1.22318 1.00722 0.91187 1.00159 1.21283 0.95489 0.99184 0.93361 1.20110 0.93567 0.90863 0.98689 0.90221 0.89860 0.89567 0.92276 0.89730 0.90855 0.91643 0.95352 0.96147 0.94512 0.74825 0.72178 0.77486 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.10 127.77 1.16 2.37 16 2 N -0.60 -16.78 2.80 -851.52 -2.38 -19.16 16 3 C 0.13 4.66 5.49 86.38 0.47 5.13 16 4 C 0.14 5.50 4.58 45.05 0.21 5.71 16 5 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 6 C -0.13 -5.60 7.30 31.25 0.23 -5.37 16 7 C 0.16 8.21 7.38 86.48 0.64 8.85 16 8 N -0.63 -33.19 3.58 -690.92 -2.48 -35.67 16 9 C -0.22 -12.72 10.52 84.03 0.88 -11.84 16 10 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 11 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 12 N -0.96 -60.34 11.52 21.65 0.25 -60.09 16 13 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 15 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 17 C 0.59 18.83 7.10 86.44 0.61 19.44 16 18 O -0.58 -23.08 15.10 -4.35 -0.07 -23.15 16 19 C -0.29 -7.70 5.28 -19.93 -0.11 -7.80 16 20 C 0.11 2.45 9.71 85.33 0.83 3.28 16 21 N -0.29 -7.60 12.61 -56.63 -0.71 -8.32 16 22 N -0.19 -4.79 5.25 -51.28 -0.27 -5.06 16 23 N -0.25 -4.92 11.96 -57.11 -0.68 -5.60 16 24 C 0.13 1.08 11.28 85.20 0.96 2.04 16 25 C -0.12 -0.97 10.04 22.24 0.22 -0.74 16 26 C -0.07 -1.20 10.00 22.29 0.22 -0.98 16 27 C 0.09 2.38 6.83 39.42 0.27 2.65 16 28 H 0.08 1.10 7.46 -2.39 -0.02 1.09 16 29 H 0.08 1.31 5.82 -2.39 -0.01 1.30 16 30 H 0.09 1.32 8.00 -2.39 -0.02 1.30 16 31 H 0.06 2.54 7.21 -2.39 -0.02 2.52 16 32 H 0.08 2.70 8.00 -2.39 -0.02 2.68 16 33 H 0.07 2.61 8.14 -2.38 -0.02 2.60 16 34 H 0.06 3.01 6.88 -2.39 -0.02 2.99 16 35 H 0.03 1.64 7.40 -2.39 -0.02 1.62 16 36 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.25 15.03 8.31 -92.71 -0.77 14.25 16 38 H 0.24 3.49 6.54 -2.91 -0.02 3.47 16 39 H 0.26 -1.08 8.06 -2.91 -0.02 -1.11 16 40 H 0.21 -0.32 8.06 -2.91 -0.02 -0.34 16 41 H 0.16 3.07 7.91 -2.92 -0.02 3.04 16 Total: -1.00 -87.36 345.73 3.82 -83.54 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.06 Total: 5.76 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 7.07 Total: 18.83 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -6.28 Total: -133.90 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.07 Total: -23.15 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -87.36 3.82 -83.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.997 kcal (2) G-P(sol) polarization free energy of solvation -87.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds