Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.46877 * 269.72057 * 8 6 4 10 10 H 1.08005 * 119.99817 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00081 * 179.97438 * 9 8 6 12 12 N 1.31510 * 120.00254 * 180.02562 * 11 9 8 13 13 Si 1.86811 * 119.99850 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46778 * 89.99559 * 13 11 9 15 15 H 1.48493 * 109.46886 * 209.99446 * 13 11 9 16 16 H 1.48492 * 109.47026 * 329.99859 * 13 11 9 17 17 N 1.46500 * 109.47277 * 120.00513 * 2 1 3 18 18 N 1.40438 * 126.82423 * 60.02395 * 17 2 1 19 19 C 1.30709 * 106.79163 * 179.97438 * 18 17 2 20 20 N 1.33239 * 108.94878 * 359.97438 * 19 18 17 21 21 C 1.30828 * 109.82744 * 359.76773 * 20 19 18 22 22 S 1.76204 * 125.96375 * 180.23527 * 21 20 19 23 23 C 1.81399 * 104.44901 * 270.16647 * 22 21 20 24 24 O 1.42106 * 104.27539 * 26.23500 * 22 21 20 25 25 O 1.42099 * 104.27922 * 154.09371 * 22 21 20 26 26 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 27 27 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 29 29 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 30 30 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 31 31 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 32 32 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 33 33 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 34 34 H 0.97008 * 120.00053 * 180.02562 * 12 11 9 35 35 H 1.08003 * 125.52576 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.47063 * 59.99622 * 23 22 21 37 37 H 1.08998 * 109.47522 * 179.97438 * 23 22 21 38 38 H 1.08994 * 109.47375 * 300.00053 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5190 -0.3530 -4.0653 10 1 3.9540 0.4540 -3.4944 11 6 4.1758 -0.8464 -5.1726 12 7 5.3318 -0.3340 -5.5339 13 14 3.4236 -2.2427 -6.1596 14 1 2.5594 -1.6829 -7.2297 15 1 4.5055 -3.0552 -6.7715 16 1 2.6079 -3.0998 -5.2623 17 7 2.0184 -0.6907 1.1961 18 7 1.7695 -2.0245 1.5585 19 6 2.3902 -2.2304 2.6902 20 7 3.0101 -1.1086 3.0541 21 6 2.7992 -0.1756 2.1616 22 16 3.4254 1.4705 2.2176 23 6 2.1562 2.4074 3.1132 24 8 4.6108 1.3682 2.9945 25 8 3.4745 1.8733 0.8557 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.1874 0.6358 -2.6194 30 1 1.0224 1.5985 -1.7375 31 1 1.1130 1.4628 -3.5100 32 1 2.3200 -2.0011 -3.4322 33 1 1.4741 -0.8191 -4.4598 34 1 5.7938 -0.6809 -6.3132 35 1 2.3998 -3.1596 3.2406 36 1 2.0296 1.9859 4.1104 37 1 2.4646 3.4495 3.1960 38 1 1.2121 2.3494 2.5718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363190821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = 19.422129 kcal Electronic energy + Delta-G solvation = -25517.948927 eV Core-core repulsion = 21719.827494 eV Total energy + Delta-G solvation = -3798.121432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.32301 -39.48334 -37.60405 -36.38297 -35.19345 -34.97988 -32.57886 -31.64764 -30.74461 -30.03616 -28.31751 -26.48962 -24.84610 -23.49949 -22.82385 -21.65326 -19.52493 -19.04589 -17.83362 -17.04642 -16.97918 -16.65795 -16.44027 -16.04221 -15.59216 -15.35920 -14.83333 -14.44719 -13.96087 -13.81568 -13.71841 -13.66559 -13.41182 -12.85542 -12.69240 -12.52048 -12.48511 -12.46790 -12.25412 -12.01166 -11.80627 -11.48576 -11.46577 -11.38938 -10.97370 -10.57493 -10.34575 -10.24098 -10.17420 -10.12872 -9.56214 -9.10832 -8.60828 -7.86108 -6.09349 -4.09117 -0.55273 0.94494 1.90781 2.21595 2.61538 3.03727 3.24965 3.32891 3.37832 3.40400 3.56162 3.58426 4.21498 4.28832 4.37068 4.38260 4.55015 4.58977 4.77033 4.93101 5.13797 5.19010 5.22574 5.30722 5.43981 5.65336 5.74881 5.85646 6.07813 6.20315 6.27113 6.56162 6.88680 7.16938 7.56783 7.64231 8.01013 8.42949 8.71186 8.95609 9.49499 11.03891 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.004413 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.318682 B = 6343.576389 C = 6604.164001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 H 0.155 0.845 4 C 0.509 3.491 5 O -0.514 6.514 6 N -0.588 5.588 7 C 0.072 3.928 8 C 0.217 3.783 9 C -0.533 4.533 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.894 5.894 13 Si 0.874 3.126 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.265 1.265 17 N -0.286 5.286 18 N -0.250 5.250 19 C 0.178 3.822 20 N -0.452 5.452 21 C -0.262 4.262 22 S 2.516 3.484 23 C -0.640 4.640 24 O -0.893 6.893 25 O -0.909 6.909 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.227 0.773 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 7.345 17.355 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 H 0.172 0.828 4 C 0.292 3.708 5 O -0.388 6.388 6 N -0.321 5.321 7 C -0.072 4.072 8 C 0.097 3.903 9 C -0.572 4.572 10 H 0.095 0.905 11 C -0.129 4.129 12 N -0.532 5.532 13 Si 0.701 3.299 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.189 1.189 17 N -0.081 5.081 18 N -0.079 5.079 19 C -0.125 4.125 20 N -0.180 5.180 21 C -0.617 4.617 22 S 2.685 3.315 23 C -0.792 4.792 24 O -0.889 6.889 25 O -0.905 6.905 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.299 6.514 16.752 22.359 hybrid contribution -0.792 -1.046 -0.486 1.400 sum -14.091 5.467 16.266 22.204 Atomic orbital electron populations 1.22418 0.90366 1.05345 1.04719 1.22189 0.97713 0.98083 0.82450 0.82765 1.19739 0.81778 0.85380 0.83913 1.90756 1.36645 1.25929 1.85508 1.47706 1.49738 1.28525 1.06101 1.21968 0.93508 0.87936 1.03755 1.19742 0.95367 0.93979 0.81188 1.21333 1.03348 1.20298 1.12180 0.90453 1.24850 0.94652 0.96366 0.97038 1.69897 1.14893 1.42127 1.26315 0.86877 0.79432 0.83030 0.80575 1.19998 1.20869 1.18920 1.49971 1.33417 1.08034 1.16636 1.78039 1.22458 0.93171 1.14229 1.26298 0.95080 0.98499 0.92616 1.70406 1.20946 0.99210 1.27393 1.37733 1.07054 1.22961 0.93955 1.05742 0.76639 0.72881 0.76262 1.30162 1.18273 1.14990 1.15767 1.93652 1.39693 1.83884 1.71679 1.93648 1.85608 1.79862 1.31407 0.87865 0.90186 0.91016 0.92840 0.91793 0.89738 0.94018 0.95185 0.92497 0.75669 0.83996 0.83626 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.11 37.16 0.34 -1.42 16 2 C 0.10 1.54 2.51 -69.08 -0.17 1.37 16 3 H 0.16 2.04 4.46 -51.93 -0.23 1.80 16 4 C 0.51 10.71 7.13 -10.98 -0.08 10.63 16 5 O -0.51 -13.41 15.52 5.56 0.09 -13.32 16 6 N -0.59 -11.96 2.86 -182.95 -0.52 -12.48 16 7 C 0.07 1.00 8.80 59.85 0.53 1.52 16 8 C 0.22 5.31 4.23 -5.19 -0.02 5.29 16 9 C -0.53 -15.52 9.94 -34.44 -0.34 -15.86 16 10 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 11 C 0.07 2.17 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -27.94 13.96 55.43 0.77 -27.17 16 13 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 17 N -0.29 -4.62 2.94 -56.34 -0.17 -4.78 16 18 N -0.25 -4.23 12.03 29.29 0.35 -3.87 16 19 C 0.18 2.57 13.03 -91.82 -1.20 1.37 16 20 N -0.45 -6.88 11.17 -15.01 -0.17 -7.05 16 21 C -0.26 -3.86 7.63 -90.66 -0.69 -4.55 16 22 S 2.52 28.24 5.84 -107.50 -0.63 27.62 16 23 C -0.64 -2.75 10.80 101.05 1.09 -1.66 16 24 O -0.89 -12.98 17.94 -57.54 -1.03 -14.01 16 25 O -0.91 -12.89 15.10 -57.54 -0.87 -13.76 16 26 H 0.10 0.86 4.51 -51.93 -0.23 0.62 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.56 6.95 -51.93 -0.36 0.20 16 30 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 31 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.04 1.11 6.47 -51.93 -0.34 0.78 16 33 H 0.03 0.67 7.50 -51.93 -0.39 0.28 16 34 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.23 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.14 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.15 0.28 8.14 -51.92 -0.42 -0.14 16 38 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -43.46 333.34 -6.88 -50.33 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.41 Total: -2.30 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.65 Total: -1.22 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.27 Total: -55.35 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.81 Total: -41.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 28.24 SS G_CDS: -0.63 Total: 27.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -43.46 -6.88 -50.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363190821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.754 kcal (2) G-P(sol) polarization free energy of solvation -43.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds