Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08994 * 110.64376 * 36.68938 * 10 9 7 12 12 C 1.55161 * 110.71529 * 273.54738 * 10 9 7 13 13 C 1.54917 * 101.57668 * 206.13835 * 12 10 9 14 14 N 1.47421 * 104.83225 * 37.00747 * 13 12 10 15 15 C 1.34784 * 125.64447 * 155.91024 * 14 13 12 16 16 O 1.21278 * 119.99769 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99777 * 359.97320 * 15 14 13 18 18 H 1.08998 * 109.54686 * 325.00007 * 17 15 14 19 19 C 1.53033 * 109.54879 * 85.19490 * 17 15 14 20 20 C 1.52574 * 109.99224 * 183.39993 * 19 17 15 21 21 C 1.52587 * 110.73073 * 290.15626 * 20 19 17 22 22 C 1.53039 * 109.98478 * 69.94970 * 21 20 19 23 23 S 1.81670 * 109.54511 * 204.80817 * 17 15 14 24 24 O 1.42096 * 108.66388 * 300.17767 * 23 17 15 25 25 O 1.42101 * 108.66140 * 71.42535 * 23 17 15 26 26 C 1.47019 * 108.70713 * 335.87306 * 14 13 12 27 27 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 29 29 H 1.09000 * 111.00518 * 324.20422 * 12 10 9 30 30 H 1.08998 * 111.00247 * 88.06518 * 12 10 9 31 31 H 1.08995 * 110.36441 * 155.85036 * 13 12 10 32 32 H 1.08999 * 110.36234 * 278.16698 * 13 12 10 33 33 H 1.09002 * 109.38700 * 303.66210 * 19 17 15 34 34 H 1.09000 * 109.38423 * 63.34268 * 19 17 15 35 35 H 1.09004 * 109.22598 * 169.81098 * 20 19 17 36 36 H 1.09000 * 109.13849 * 50.44385 * 20 19 17 37 37 H 1.08994 * 109.38620 * 309.79479 * 21 20 19 38 38 H 1.08995 * 109.38776 * 190.10703 * 21 20 19 39 39 H 1.08999 * 109.55357 * 176.49221 * 22 21 20 40 40 H 1.09009 * 109.54590 * 56.20860 * 22 21 20 41 41 H 1.08998 * 109.88194 * 241.64598 * 26 14 13 42 42 H 1.08997 * 109.88270 * 120.47484 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9586 -3.5773 0.6226 12 6 2.4105 -4.0948 -1.4327 13 6 2.5146 -5.6324 -1.2751 14 7 1.4567 -5.9855 -0.3110 15 6 0.8637 -7.1909 -0.2021 16 8 0.0011 -7.3693 0.6316 17 6 1.2724 -8.3171 -1.1164 18 1 1.5204 -7.9169 -2.0995 19 6 2.4921 -9.0336 -0.5326 20 6 2.9660 -10.1219 -1.4912 21 6 1.9650 -11.2725 -1.5396 22 6 0.6840 -10.8220 -2.2452 23 16 -0.0957 -9.5024 -1.2698 24 8 -0.4029 -10.0118 0.0206 25 8 -1.1268 -8.9087 -2.0467 26 6 1.1564 -4.8053 0.5126 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0068 29 1 1.6144 -3.8263 -2.1271 30 1 3.3628 -3.6690 -1.7488 31 1 2.3363 -6.1246 -2.2311 32 1 3.4933 -5.9080 -0.8823 33 1 3.2946 -8.3128 -0.3760 34 1 2.2232 -9.4863 0.4218 35 1 3.9319 -10.4998 -1.1559 36 1 3.0735 -9.6970 -2.4892 37 1 1.7268 -11.5877 -0.5238 38 1 2.4023 -12.1098 -2.0834 39 1 -0.0011 -11.6654 -2.3312 40 1 0.9279 -10.4457 -3.2388 41 1 1.3733 -5.0187 1.5593 42 1 0.1080 -4.5301 0.3977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968892935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = -89.263348 kcal Electronic energy + Delta-G solvation = -25236.539562 eV Core-core repulsion = 21537.245517 eV Total energy + Delta-G solvation = -3699.294045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.20451 -37.84852 -37.35272 -36.83503 -36.10668 -34.23675 -32.59259 -31.40589 -29.64801 -28.78329 -27.48232 -24.66627 -23.61806 -22.84812 -21.49249 -20.31662 -19.70658 -18.85358 -17.57934 -17.46119 -17.07238 -16.44706 -16.08303 -15.78714 -15.30186 -15.14381 -14.72161 -14.33764 -14.05909 -13.99034 -13.58546 -13.37454 -13.28952 -12.82842 -12.60872 -12.36581 -12.18756 -12.15341 -11.99459 -11.96349 -11.86532 -11.67023 -11.44403 -11.23936 -10.93972 -10.89102 -10.75227 -10.56654 -10.39454 -10.13918 -9.96717 -9.78654 -9.01672 -8.58967 -7.09502 -5.85538 -3.17063 -0.32398 2.36730 2.46520 2.78962 3.38319 3.43318 3.45742 3.52848 3.63680 4.04006 4.07412 4.14675 4.34628 4.42494 4.48854 4.50815 4.73637 4.89830 4.94167 5.03620 5.15164 5.23858 5.28843 5.29514 5.42692 5.45791 5.49089 5.53637 5.67080 5.67517 5.85742 6.05549 6.14665 6.26940 6.41025 6.50849 6.82248 7.46476 7.61008 7.97030 8.31312 9.42899 9.96396 10.30958 11.36477 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.002953 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.670351 B = 9478.152869 C = 9879.387722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.173 3.827 11 H 0.066 0.934 12 C -0.156 4.156 13 C 0.095 3.905 14 N -0.598 5.598 15 C 0.551 3.449 16 O -0.527 6.527 17 C -0.603 4.603 18 H 0.153 0.847 19 C -0.098 4.098 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.611 4.611 23 S 2.443 3.557 24 O -0.907 6.907 25 O -0.931 6.931 26 C 0.098 3.902 27 H 0.257 0.743 28 H 0.387 0.613 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.071 0.929 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -24.022 -6.709 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.061 3.939 11 H 0.084 0.916 12 C -0.198 4.198 13 C -0.028 4.028 14 N -0.331 5.331 15 C 0.336 3.664 16 O -0.404 6.404 17 C -0.712 4.712 18 H 0.171 0.829 19 C -0.137 4.137 20 C -0.175 4.175 21 C -0.150 4.150 22 C -0.740 4.740 23 S 2.619 3.381 24 O -0.904 6.904 25 O -0.928 6.928 26 C -0.025 4.025 27 H 0.067 0.933 28 H 0.222 0.778 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.089 0.911 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.658 -23.921 -5.888 25.798 hybrid contribution 0.998 1.000 -0.684 1.570 sum 8.656 -22.921 -6.572 25.367 Atomic orbital electron populations 1.69662 1.05183 1.25992 1.56703 1.24790 0.95524 0.97868 1.02386 0.86164 0.78640 0.83631 0.77532 1.21624 1.21693 1.20676 1.19192 0.91030 0.83753 1.43879 0.90940 1.42377 1.05861 0.99319 1.88090 1.21182 0.94072 0.85659 0.93013 0.91648 1.23608 1.02957 0.91243 1.01948 1.22501 0.90322 0.98051 0.91907 1.48317 1.38310 1.10064 1.36430 1.18714 0.81998 0.81832 0.83838 1.90885 1.31594 1.81551 1.36405 1.30672 1.19626 1.12418 1.08490 0.82900 1.21273 0.94750 0.97866 0.99778 1.21713 1.00162 0.95057 1.00615 1.21314 0.92336 0.99546 1.01834 1.30373 1.10292 1.18883 1.14448 1.07793 0.76267 0.77500 0.76501 1.93590 1.81042 1.78214 1.37520 1.93603 1.50720 1.76278 1.72175 1.22418 1.01436 0.84187 0.94426 0.93261 0.77843 0.90383 0.90305 0.91232 0.91201 0.88947 0.88986 0.89133 0.90414 0.89454 0.89298 0.84504 0.84793 0.91105 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.56 9.98 -15.06 -0.15 -6.71 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.19 5.25 -51.65 -0.27 -17.46 16 10 C 0.17 3.19 3.59 -66.09 -0.24 2.95 16 11 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 12 C -0.16 -2.39 6.77 -24.58 -0.17 -2.56 16 13 C 0.10 1.12 6.69 -2.53 -0.02 1.11 16 14 N -0.60 -8.98 3.33 -170.52 -0.57 -9.55 16 15 C 0.55 8.54 6.98 -10.98 -0.08 8.46 16 16 O -0.53 -10.42 15.80 -9.59 -0.15 -10.58 16 17 C -0.60 -6.14 2.31 -27.86 -0.06 -6.20 16 18 H 0.15 1.06 6.71 -51.93 -0.35 0.71 16 19 C -0.10 -0.70 5.00 -26.93 -0.13 -0.84 16 20 C -0.14 -0.57 5.62 -27.16 -0.15 -0.72 16 21 C -0.11 -0.51 5.73 -26.92 -0.15 -0.66 16 22 C -0.61 -3.45 6.35 37.18 0.24 -3.21 16 23 S 2.44 28.03 4.31 -107.50 -0.46 27.56 16 24 O -0.91 -13.72 17.07 -64.34 -1.10 -14.82 16 25 O -0.93 -14.33 18.11 -57.82 -1.05 -15.37 16 26 C 0.10 1.72 6.62 -3.07 -0.02 1.70 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.39 10.08 7.51 -40.82 -0.31 9.78 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.64 6.82 -51.93 -0.35 0.29 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 37 H 0.09 0.44 8.02 -51.93 -0.42 0.02 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -37.28 349.33 -10.10 -47.38 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.43 Total: 4.73 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.03 Total: -7.03 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.11 Total: -53.83 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -2.30 Total: -40.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 28.03 SS G_CDS: -0.46 Total: 27.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.28 -10.10 -47.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968892935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.885 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds