Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00042 * 2 1 4 4 H 1.48499 * 109.46859 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46877 * 299.99908 * 3 2 1 6 6 H 1.48496 * 109.47028 * 60.00111 * 3 2 1 7 7 C 1.38809 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00624 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99575 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99817 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.45900 * 154.99905 * 10 9 7 12 12 C 1.53191 * 109.31174 * 181.36989 * 11 10 9 13 13 N 1.46924 * 108.77327 * 305.36246 * 12 11 10 14 14 C 1.34777 * 120.62813 * 233.58228 * 13 12 11 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72946 * 14 13 12 17 17 H 1.08995 * 110.28669 * 38.16479 * 16 14 13 18 18 C 1.54170 * 110.31733 * 275.93859 * 16 14 13 19 19 C 1.53882 * 108.70397 * 213.18888 * 18 16 14 20 20 C 1.55045 * 106.62242 * 47.18023 * 19 18 16 21 21 S 1.82915 * 110.32058 * 160.28002 * 16 14 13 22 22 O 1.42100 * 109.35388 * 234.42536 * 21 16 14 23 23 O 1.42107 * 109.35300 * 7.49060 * 21 16 14 24 24 C 1.46921 * 118.73733 * 53.86655 * 13 12 11 25 25 C 1.53041 * 109.44601 * 275.05554 * 10 9 7 26 26 H 0.97005 * 119.99974 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00008 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.46196 * 35.02424 * 10 9 7 29 29 H 1.09008 * 109.50055 * 61.41409 * 11 10 9 30 30 H 1.08995 * 109.52388 * 301.34133 * 11 10 9 31 31 H 1.09006 * 109.58153 * 185.57630 * 12 11 10 32 32 H 1.08998 * 109.70267 * 65.22718 * 12 11 10 33 33 H 1.08997 * 109.64625 * 333.04247 * 18 16 14 34 34 H 1.08998 * 109.64483 * 93.34106 * 18 16 14 35 35 H 1.09001 * 110.02628 * 287.89173 * 19 18 16 36 36 H 1.08993 * 110.02633 * 166.47420 * 19 18 16 37 37 H 1.08997 * 110.78947 * 199.29722 * 20 19 18 38 38 H 1.09001 * 110.95230 * 75.90971 * 20 19 18 39 39 H 1.09000 * 109.59076 * 65.92234 * 24 13 12 40 40 H 1.09000 * 109.58577 * 186.34777 * 24 13 12 41 41 H 1.08990 * 109.50248 * 298.57827 * 25 10 9 42 42 H 1.09008 * 109.49515 * 58.67412 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.1800 -4.7519 0.6113 12 6 1.9614 -6.0692 0.6422 13 7 2.4416 -6.3661 -0.7142 14 6 2.1739 -7.5535 -1.2928 15 8 1.5306 -8.3890 -0.6934 16 6 2.6682 -7.8407 -2.6872 17 1 3.6636 -7.4202 -2.8293 18 6 1.6886 -7.2680 -3.7309 19 6 1.6865 -8.1894 -4.9634 20 6 1.5541 -9.6401 -4.4324 21 16 2.6906 -9.6437 -2.9944 22 8 3.9890 -10.0326 -3.4213 23 8 2.0734 -10.3149 -1.9044 24 6 3.2244 -5.3463 -1.4254 25 6 2.4241 -4.0351 -1.4354 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3880 0.0005 28 1 2.9680 -3.5502 0.5921 29 1 0.2812 -4.8761 0.0072 30 1 0.8998 -4.4711 1.6265 31 1 1.3089 -6.8731 0.9831 32 1 2.8111 -5.9766 1.3187 33 1 0.6860 -7.2221 -3.3060 34 1 2.0074 -6.2672 -4.0222 35 1 2.6201 -8.0775 -5.5147 36 1 0.8409 -7.9491 -5.6076 37 1 1.8797 -10.3586 -5.1846 38 1 0.5315 -9.8482 -4.1178 39 1 4.1752 -5.1935 -0.9148 40 1 3.4057 -5.6731 -2.4494 41 1 1.5138 -4.1659 -2.0203 42 1 3.0301 -3.2437 -1.8768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997331663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = -86.337833 kcal Electronic energy + Delta-G solvation = -25389.520431 eV Core-core repulsion = 21690.353246 eV Total energy + Delta-G solvation = -3699.167185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.36023 -37.66667 -37.17958 -36.52009 -35.98525 -34.57448 -32.27686 -31.35579 -30.19444 -29.18841 -26.22116 -24.82056 -23.12294 -22.74646 -21.99615 -20.68401 -19.36046 -18.64160 -17.96161 -17.13251 -16.98505 -16.47265 -15.94009 -15.34552 -15.23957 -14.89792 -14.57880 -14.33169 -14.08402 -13.80329 -13.58482 -13.54338 -13.19895 -12.96730 -12.57524 -12.44311 -12.24956 -12.18986 -12.10535 -11.92827 -11.63332 -11.52021 -11.07920 -10.98646 -10.92431 -10.89036 -10.59627 -10.52328 -10.26656 -9.91299 -9.85466 -9.74083 -8.98953 -8.61233 -7.05552 -5.84731 -3.14353 -0.27338 2.23537 2.38202 2.82641 3.36224 3.37140 3.42930 3.45265 3.70937 3.98223 4.12235 4.25820 4.31928 4.51028 4.55157 4.65048 4.97610 5.03870 5.13810 5.22703 5.25309 5.30982 5.34747 5.42915 5.46047 5.51956 5.56887 5.64401 5.85567 5.92164 6.14155 6.25357 6.29768 6.41895 6.49849 6.79667 6.94082 7.31084 7.62074 7.99627 8.33365 9.44902 10.01753 10.36300 11.37738 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.003058 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.690195 B = 9153.798373 C = 9525.327282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.115 3.885 13 N -0.595 5.595 14 C 0.533 3.467 15 O -0.508 6.508 16 C -0.600 4.600 17 H 0.160 0.840 18 C -0.103 4.103 19 C -0.118 4.118 20 C -0.591 4.591 21 S 2.405 3.595 22 O -0.936 6.936 23 O -0.893 6.893 24 C 0.101 3.899 25 C -0.149 4.149 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -17.411 -10.107 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.067 3.933 11 C -0.178 4.178 12 C -0.008 4.008 13 N -0.329 5.329 14 C 0.317 3.683 15 O -0.383 6.383 16 C -0.709 4.709 17 H 0.177 0.823 18 C -0.141 4.141 19 C -0.156 4.156 20 C -0.720 4.720 21 S 2.584 3.416 22 O -0.933 6.933 23 O -0.890 6.890 24 C -0.023 4.023 25 C -0.191 4.191 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.957 -18.405 -9.276 21.198 hybrid contribution -0.132 1.906 -0.604 2.004 sum 4.825 -16.499 -9.880 19.827 Atomic orbital electron populations 1.69670 1.05140 1.25631 1.57506 1.24752 0.95496 0.97733 1.02861 0.86141 0.78782 0.84159 0.77229 1.20541 1.21876 1.21835 1.19271 0.90992 0.84062 1.42905 0.91108 1.42444 1.05818 0.99690 1.88496 1.20174 0.94527 0.86136 0.92418 1.22208 0.99162 0.93973 1.02409 1.21706 0.99008 0.98323 0.81734 1.48067 1.53418 1.14315 1.17073 1.19122 0.80999 0.82873 0.85298 1.90947 1.38882 1.44771 1.63735 1.30780 1.09625 1.28705 1.01769 0.82275 1.21933 0.99066 1.01333 0.91816 1.22209 1.05506 0.89712 0.98209 1.30687 1.17157 1.04862 1.19332 1.08965 0.77070 0.77517 0.78043 1.93621 1.37136 1.79639 1.82945 1.93711 1.76789 1.69119 1.49388 1.22082 0.94679 0.88874 0.96630 1.22753 0.99935 0.94477 1.01900 0.93499 0.78243 0.93351 0.91761 0.90370 0.88994 0.91245 0.89071 0.87991 0.89206 0.87984 0.84440 0.84121 0.91151 0.90272 0.92067 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.04 5.12 -53.39 -0.27 -17.31 16 10 C 0.18 3.19 2.73 -67.89 -0.19 3.00 16 11 C -0.14 -2.16 5.55 -26.61 -0.15 -2.30 16 12 C 0.11 1.56 6.43 -3.71 -0.02 1.54 16 13 N -0.60 -7.72 2.97 -172.51 -0.51 -8.24 16 14 C 0.53 7.08 6.78 -10.98 -0.07 7.00 16 15 O -0.51 -8.54 13.64 -18.21 -0.25 -8.79 16 16 C -0.60 -5.52 2.62 -27.27 -0.07 -5.59 16 17 H 0.16 1.09 6.70 -51.93 -0.35 0.74 16 18 C -0.10 -0.71 5.76 -25.66 -0.15 -0.86 16 19 C -0.12 -0.58 6.48 -25.19 -0.16 -0.74 16 20 C -0.59 -3.47 7.31 38.24 0.28 -3.19 16 21 S 2.41 24.21 5.92 -107.50 -0.64 23.58 16 22 O -0.94 -11.59 18.15 -57.73 -1.05 -12.64 16 23 O -0.89 -13.19 15.41 -67.05 -1.03 -14.22 16 24 C 0.10 1.16 6.26 -3.49 -0.02 1.14 16 25 C -0.15 -2.26 5.67 -26.39 -0.15 -2.41 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 28 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.30 7.01 -51.93 -0.36 0.94 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 34 H 0.10 0.60 7.57 -51.93 -0.39 0.21 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.69 4.98 -51.93 -0.26 0.43 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -36.25 343.69 -10.10 -46.35 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.28 Total: 5.40 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.95 Total: -9.33 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.06 Total: -52.10 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.33 Total: -35.65 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 24.21 SS G_CDS: -0.64 Total: 23.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.25 -10.10 -46.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997331663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.988 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds