Wall clock time and date at job start Tue Mar 31 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48498 * 109.47209 * 270.00261 * 3 2 1 5 5 H 1.48502 * 109.47071 * 30.00487 * 3 2 1 6 6 H 1.48497 * 109.47089 * 149.99820 * 3 2 1 7 7 C 1.38806 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99658 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00121 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47066 * 325.00537 * 10 9 7 12 12 C 1.53004 * 109.46941 * 85.00039 * 10 9 7 13 13 C 1.52991 * 109.47205 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47429 * 299.99865 * 13 12 10 15 15 H 1.09000 * 109.46967 * 300.00333 * 14 13 12 16 16 N 1.46498 * 109.47358 * 179.97438 * 14 13 12 17 17 C 1.34777 * 119.99757 * 85.00210 * 16 14 13 18 18 O 1.21281 * 120.00219 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99872 * 180.02562 * 17 16 14 20 20 C 1.55880 * 110.82193 * 180.02562 * 19 17 16 21 21 S 1.83090 * 82.44112 * 142.68979 * 20 19 17 22 22 O 1.42105 * 111.36007 * 90.41650 * 21 20 19 23 23 O 1.42100 * 111.36335 * 229.53580 * 21 20 19 24 24 C 1.55889 * 110.77965 * 293.62670 * 19 17 16 25 25 C 1.53004 * 109.46817 * 59.99897 * 14 13 12 26 26 C 1.52999 * 109.47188 * 204.99997 * 10 9 7 27 27 H 0.97000 * 120.00006 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00345 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46967 * 300.00520 * 12 10 9 30 30 H 1.09009 * 109.46825 * 59.99907 * 12 10 9 31 31 H 1.09001 * 109.47016 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47318 * 59.99983 * 13 12 10 33 33 H 0.96996 * 119.99675 * 265.00313 * 16 14 13 34 34 H 1.08994 * 110.43797 * 56.79860 * 19 17 16 35 35 H 1.08999 * 114.38240 * 29.29823 * 20 19 17 36 36 H 1.08996 * 114.37991 * 256.08238 * 20 19 17 37 37 H 1.09002 * 114.38391 * 103.88568 * 24 19 17 38 38 H 1.09005 * 114.38243 * 330.67301 * 24 19 17 39 39 H 1.08997 * 109.46834 * 59.99939 * 25 14 13 40 40 H 1.08995 * 109.46916 * 180.02562 * 25 14 13 41 41 H 1.09001 * 109.47022 * 60.00475 * 26 10 9 42 42 H 1.09002 * 109.46986 * 299.99815 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.9689 -3.5499 -0.5920 12 6 2.4220 -4.0368 1.4340 13 6 3.1876 -5.3614 1.4328 14 6 2.3109 -6.4567 0.8220 15 1 1.4002 -6.5638 1.4112 16 7 3.0442 -7.7249 0.8204 17 6 3.0361 -8.5094 1.9162 18 8 2.4213 -8.1657 2.9036 19 6 3.7908 -9.8138 1.9147 20 6 3.6364 -10.5449 3.2828 21 16 3.5936 -12.0285 2.2106 22 8 4.8965 -12.5583 2.0079 23 8 2.4918 -12.8668 2.5307 24 6 3.1548 -10.8197 0.9079 25 6 1.9471 -6.0766 -0.6147 26 6 1.1810 -4.7516 -0.6133 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0469 -3.2568 1.8690 30 1 1.5112 -4.1436 2.0233 31 1 3.4464 -5.6324 2.4564 32 1 4.0983 -5.2543 0.8436 33 1 3.5355 -8.0000 0.0306 34 1 4.8421 -9.6449 1.6818 35 1 2.7002 -10.3371 3.8009 36 1 4.5123 -10.4814 3.9283 37 1 3.7113 -10.9384 -0.0218 38 1 2.0830 -10.6891 0.7577 39 1 2.8578 -5.9693 -1.2038 40 1 1.3222 -6.8566 -1.0497 41 1 0.9219 -4.4808 -1.6369 42 1 0.2703 -4.8583 -0.0239 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034652021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:43 Heat of formation + Delta-G solvation = -83.631646 kcal Electronic energy + Delta-G solvation = -24283.780924 eV Core-core repulsion = 20584.731088 eV Total energy + Delta-G solvation = -3699.049836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.45782 -38.28497 -37.69537 -36.53727 -35.68009 -34.99242 -33.08430 -30.70967 -30.48149 -28.07795 -27.55154 -24.64720 -23.32324 -22.40519 -21.04185 -20.48838 -19.49531 -19.27807 -18.10851 -17.16428 -17.05331 -17.03889 -16.25668 -15.94334 -15.50439 -15.04749 -14.44912 -14.22101 -14.02266 -13.82669 -13.74203 -13.58803 -13.12710 -12.79466 -12.67643 -12.61367 -12.60787 -12.38242 -12.10108 -11.88690 -11.53015 -11.18510 -11.13162 -10.96844 -10.85102 -10.83124 -10.71614 -10.23606 -10.17141 -10.03214 -9.82485 -9.62282 -9.12807 -8.88713 -6.97162 -5.78065 -3.06817 -0.55007 1.68410 2.19740 2.73961 2.96849 3.35629 3.41745 3.46583 3.47016 3.48742 3.57099 4.24101 4.49434 4.52401 4.57539 4.80465 4.83687 4.95113 5.04819 5.19209 5.27205 5.46908 5.52371 5.61038 5.65160 5.76321 5.79832 5.94840 6.15074 6.16320 6.22307 6.39381 6.49384 6.56678 6.66267 6.93425 7.09924 7.22969 7.68215 7.91300 8.40726 9.51688 10.09896 10.44285 11.44643 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.044581 B = 0.002206 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.917345 B =12687.257148 C =12827.222698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.143 3.857 15 H 0.089 0.911 16 N -0.719 5.719 17 C 0.533 3.467 18 O -0.525 6.525 19 C -0.169 4.169 20 C -0.537 4.537 21 S 2.380 3.620 22 O -0.921 6.921 23 O -0.930 6.930 24 C -0.561 4.561 25 C -0.119 4.119 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.400 0.600 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.445 -24.703 0.813 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.174 4.174 13 C -0.163 4.163 14 C 0.040 3.960 15 H 0.107 0.893 16 N -0.369 5.369 17 C 0.317 3.683 18 O -0.401 6.401 19 C -0.193 4.193 20 C -0.667 4.667 21 S 2.563 3.437 22 O -0.918 6.918 23 O -0.927 6.927 24 C -0.690 4.690 25 C -0.157 4.157 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.234 0.766 34 H 0.156 0.844 35 H 0.179 0.821 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.270 -25.419 1.611 26.779 hybrid contribution 0.437 2.083 -0.495 2.185 sum 8.707 -23.336 1.116 24.932 Atomic orbital electron populations 1.69662 1.05095 1.25638 1.57756 1.24745 0.95514 0.97684 1.03097 0.86209 0.78658 0.83955 0.77482 1.21755 1.21786 1.20808 1.19229 0.90947 0.84150 1.42570 0.91249 1.42429 1.05795 0.99786 1.88565 1.20233 0.94282 0.86010 0.92733 0.93628 1.22233 0.99780 0.94427 1.00913 1.21900 0.98601 0.95429 1.00381 1.21195 0.95496 0.81569 0.97758 0.89254 1.46117 1.53087 1.21799 1.15921 1.19612 0.81115 0.84189 0.83432 1.90753 1.43146 1.73202 1.32989 1.23377 1.04214 0.98028 0.93678 1.30848 1.13447 1.17807 1.04590 1.10253 0.75568 0.77122 0.80795 1.93686 1.37712 1.76749 1.83622 1.93614 1.53048 1.65041 1.80993 1.30944 1.11094 1.14069 1.12845 1.21762 1.00884 0.98384 0.94688 1.21769 0.98944 0.93400 1.01860 0.93520 0.78292 0.91748 0.92457 0.92382 0.92258 0.76650 0.84405 0.82097 0.83288 0.82893 0.82877 0.91513 0.91829 0.91287 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.76 5.12 -53.42 -0.27 -18.03 16 10 C 0.18 3.33 2.77 -67.93 -0.19 3.14 16 11 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 12 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 13 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 14 C 0.14 1.69 2.45 -67.93 -0.17 1.52 16 15 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 16 N -0.72 -6.25 5.08 -53.80 -0.27 -6.53 16 17 C 0.53 5.13 7.15 -10.99 -0.08 5.05 16 18 O -0.53 -7.34 15.37 5.56 0.09 -7.25 16 19 C -0.17 -0.90 3.21 -88.69 -0.29 -1.18 16 20 C -0.54 -2.76 8.20 38.70 0.32 -2.45 16 21 S 2.38 12.39 6.82 -107.50 -0.73 11.66 16 22 O -0.92 -7.50 18.18 -57.45 -1.04 -8.55 16 23 O -0.93 -8.67 18.18 -57.45 -1.04 -9.72 16 24 C -0.56 -1.82 8.49 38.70 0.33 -1.49 16 25 C -0.12 -1.32 5.39 -26.70 -0.14 -1.46 16 26 C -0.12 -1.82 5.39 -26.70 -0.14 -1.97 16 27 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 2.21 8.60 -40.82 -0.35 1.86 16 34 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.16 1.01 7.40 -51.93 -0.38 0.63 16 36 H 0.15 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.15 0.10 8.14 -51.93 -0.42 -0.33 16 38 H 0.15 0.48 8.10 -51.93 -0.42 0.06 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -38.05 355.41 -9.61 -47.66 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.48 Total: 5.77 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.90 Total: -10.30 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.18 Total: -51.85 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -2.00 Total: -25.52 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 12.39 SS G_CDS: -0.73 Total: 11.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.05 -9.61 -47.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034652021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.968 kcal (2) G-P(sol) polarization free energy of solvation -38.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds