Wall clock time and date at job start Tue Mar 31 2020 05:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21592 * 120.00329 * 0.02562 * 16 15 14 18 18 C 1.47508 * 120.00003 * 179.97438 * 16 15 14 19 19 C 1.38673 * 120.33623 * 0.02562 * 18 16 15 20 20 C 1.38993 * 120.62851 * 179.97438 * 19 18 16 21 21 C 1.36215 * 121.14250 * 359.97438 * 20 19 18 22 22 C 1.40689 * 120.17490 * 359.97438 * 21 20 19 23 23 N 1.33755 * 120.98137 * 180.02562 * 22 21 20 24 24 C 1.31326 * 119.73369 * 179.97438 * 23 22 21 25 25 C 1.39647 * 120.68439 * 0.02562 * 24 23 22 26 26 N 1.31446 * 120.63998 * 359.97367 * 25 24 23 27 27 C 1.33498 * 119.72649 * 359.82500 * 26 25 24 28 28 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 31 31 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 32 32 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 34 34 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 35 35 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 36 36 H 1.07996 * 119.68748 * 359.97032 * 19 18 16 37 37 H 1.08000 * 119.42813 * 179.97438 * 20 19 18 38 38 H 1.08010 * 119.91479 * 180.02562 * 21 20 19 39 39 H 1.08009 * 119.65752 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.67707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3872 -6.2313 2.2187 18 6 -0.4886 -4.7373 4.0091 19 6 -0.1017 -3.5099 4.5256 20 6 -0.5170 -3.1114 5.7907 21 6 -1.3121 -3.9104 6.5554 22 6 -1.7299 -5.1636 6.0712 23 7 -2.5111 -5.9608 6.8081 24 6 -2.8869 -7.1255 6.3318 25 6 -2.4790 -7.5417 5.0627 26 7 -1.7113 -6.7748 4.3209 27 6 -1.3201 -5.5850 4.7828 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0015 30 1 2.9641 -3.2122 -1.9146 31 1 3.0368 -4.9285 -1.4486 32 1 1.3708 -4.5275 -3.1130 33 1 0.3130 -4.9200 -0.0361 34 1 1.7583 -5.6761 0.6765 35 1 1.0152 -3.4802 2.2898 36 1 0.5284 -2.8575 3.9393 37 1 -0.2037 -2.1515 6.1742 38 1 -1.6235 -3.5807 7.5357 39 1 -3.5175 -7.7686 6.9281 40 1 -2.7980 -8.5026 4.6869 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676592839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:23 Heat of formation + Delta-G solvation = 9.370964 kcal Electronic energy + Delta-G solvation = -25744.505038 eV Core-core repulsion = 21946.336898 eV Total energy + Delta-G solvation = -3798.168140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57134 -39.34907 -37.46579 -37.06519 -35.06482 -34.71736 -33.72109 -31.72239 -30.96473 -30.60708 -28.04691 -25.80802 -25.37329 -24.20687 -23.59012 -22.99625 -20.36440 -20.12902 -18.84920 -18.39137 -17.70873 -17.09716 -16.68982 -16.44062 -15.67347 -15.38510 -15.15735 -14.82930 -14.67244 -14.21795 -14.13883 -13.96109 -13.71160 -13.42200 -13.23487 -13.00145 -12.34535 -12.09257 -11.93685 -11.87248 -11.66733 -11.63973 -11.45640 -10.87461 -10.79119 -10.45506 -10.05545 -9.81391 -9.51938 -9.21866 -9.16650 -9.03612 -8.97376 -8.80700 -8.53937 -7.13672 -6.16688 -3.18558 -0.12792 0.39480 1.57518 2.51415 3.31644 3.39944 3.45478 3.48815 3.66666 3.83606 3.99081 4.00720 4.17605 4.56590 4.58511 4.64836 4.82304 4.85214 4.92653 5.06583 5.17264 5.32137 5.43047 5.51552 5.56002 5.63886 5.79439 5.83008 5.94748 5.94858 5.98068 6.04364 6.28158 6.39209 6.42910 6.65575 6.84668 7.13220 7.62677 7.70491 7.89360 8.12982 8.56557 8.68831 9.13350 10.00266 10.16100 11.30664 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.003716 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.511927 B = 7533.087951 C = 9072.835712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.078 2.922 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.340 4.340 8 H 0.064 0.936 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.120 3.880 15 N -0.713 5.713 16 C 0.548 3.452 17 O -0.511 6.511 18 C -0.095 4.095 19 C -0.056 4.056 20 C -0.101 4.101 21 C -0.065 4.065 22 C 0.070 3.930 23 N -0.427 5.427 24 C 0.072 3.928 25 C 0.071 3.929 26 N -0.386 5.386 27 C 0.113 3.887 28 H 0.257 0.743 29 H 0.372 0.628 30 H 0.049 0.951 31 H 0.028 0.972 32 H 0.365 0.635 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.174 0.826 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -11.586 11.578 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.238 4.238 3 Si 0.909 3.091 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.471 4.471 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.365 6.365 14 C -0.004 4.004 15 N -0.366 5.366 16 C 0.333 3.667 17 O -0.387 6.387 18 C -0.099 4.099 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.084 4.084 22 C -0.055 4.055 23 N -0.141 5.141 24 C -0.104 4.104 25 C -0.104 4.104 26 N -0.099 5.099 27 C -0.013 4.013 28 H 0.069 0.931 29 H 0.206 0.794 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.210 0.790 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.242 0.758 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.191 0.809 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.713 -10.322 11.789 15.686 hybrid contribution 0.351 -1.412 -0.538 1.551 sum -0.363 -11.734 11.252 16.261 Atomic orbital electron populations 1.70865 1.06043 1.28713 1.52559 1.25735 0.96996 1.00874 1.00162 0.83268 0.74230 0.75757 0.75823 1.21063 1.22236 1.22364 1.20016 0.91895 0.85715 1.49471 0.91784 1.42383 1.05082 1.00047 1.89278 1.20534 0.94985 0.86500 0.91979 0.91539 1.23008 0.86449 0.97368 0.95333 1.86553 1.32174 1.92021 1.25775 1.21561 0.99577 0.97005 0.82292 1.45937 1.51083 1.21678 1.17898 1.17867 0.79512 0.84901 0.84382 1.90818 1.55062 1.21521 1.71254 1.19991 0.99732 0.94723 0.95503 1.21753 0.96350 0.94111 0.95422 1.21002 0.96954 1.00417 0.93739 1.20968 0.95878 0.91121 1.00454 1.19521 0.97634 0.96239 0.92056 1.68675 1.08193 1.03857 1.33364 1.24071 0.97654 0.93443 0.95209 1.24257 0.93844 1.00412 0.91913 1.69028 1.06594 1.02124 1.32134 1.19300 0.96989 0.92692 0.92308 0.93140 0.79433 0.93250 0.95373 0.79033 0.90579 0.91894 0.75765 0.83597 0.83703 0.83919 0.80891 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.89 13.70 55.49 0.76 -27.13 16 2 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 3 Si 1.08 24.65 29.92 -169.99 -5.09 19.56 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.30 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.34 -8.87 9.93 -15.06 -0.15 -9.02 16 8 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 9 N -0.72 -16.99 4.51 -53.43 -0.24 -17.23 16 10 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 11 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 12 C 0.06 1.04 6.86 37.16 0.25 1.30 16 13 O -0.56 -10.08 12.64 -35.23 -0.45 -10.52 16 14 C 0.12 2.17 5.12 -4.04 -0.02 2.15 16 15 N -0.71 -12.47 5.34 -61.36 -0.33 -12.80 16 16 C 0.55 10.09 7.77 -12.48 -0.10 10.00 16 17 O -0.51 -10.85 15.19 5.28 0.08 -10.77 16 18 C -0.09 -1.52 5.90 -104.63 -0.62 -2.14 16 19 C -0.06 -0.73 9.52 -39.14 -0.37 -1.10 16 20 C -0.10 -1.09 9.93 -40.03 -0.40 -1.48 16 21 C -0.06 -0.73 9.97 -39.38 -0.39 -1.12 16 22 C 0.07 0.96 6.59 -84.82 -0.56 0.40 16 23 N -0.43 -5.35 10.46 -10.82 -0.11 -5.46 16 24 C 0.07 0.71 11.21 -17.24 -0.19 0.51 16 25 C 0.07 0.81 11.22 -17.19 -0.19 0.61 16 26 N -0.39 -6.21 8.56 -10.59 -0.09 -6.30 16 27 C 0.11 1.80 6.60 -84.52 -0.56 1.24 16 28 H 0.26 7.68 6.77 -40.82 -0.28 7.41 16 29 H 0.37 9.48 6.63 -40.82 -0.27 9.21 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.36 4.73 9.12 45.56 0.42 5.14 16 33 H 0.08 1.55 7.39 -51.93 -0.38 1.17 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.41 6.87 6.16 -40.82 -0.25 6.62 16 36 H 0.15 1.80 6.37 -52.49 -0.33 1.47 16 37 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -36.03 345.59 -7.53 -43.56 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -3.69 Total: 18.64 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -3.58 Total: 3.24 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.01 Total: -68.92 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.36 Total: -21.29 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.03 -7.53 -43.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.926 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds