Wall clock time and date at job start Tue Mar 31 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21589 * 120.00476 * 359.97438 * 16 15 14 18 18 C 1.47508 * 119.99527 * 179.97438 * 16 15 14 19 19 C 1.38674 * 120.34510 * 359.97438 * 18 16 15 20 20 C 1.38987 * 120.63651 * 179.97438 * 19 18 16 21 21 C 1.36222 * 121.13920 * 359.97334 * 20 19 18 22 22 C 1.40690 * 120.17001 * 359.97438 * 21 20 19 23 23 N 1.33760 * 120.97077 * 180.02562 * 22 21 20 24 24 C 1.31334 * 119.73107 * 179.97438 * 23 22 21 25 25 C 1.39650 * 120.67783 * 0.02562 * 24 23 22 26 26 N 1.31447 * 120.64832 * 359.96769 * 25 24 23 27 27 C 1.33502 * 119.71677 * 359.83043 * 26 25 24 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 31 31 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 32 32 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 33 33 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 34 34 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 35 35 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 36 36 H 1.08000 * 119.67759 * 359.97303 * 19 18 16 37 37 H 1.07997 * 119.42741 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.91147 * 179.97438 * 21 20 19 39 39 H 1.07992 * 119.66273 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.67343 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 7 0.7341 -4.3252 -1.9582 16 6 -0.0558 -5.1331 -2.6929 17 8 -0.3975 -6.2138 -2.2526 18 6 -0.5059 -4.7063 -4.0313 19 6 -0.1210 -3.4751 -4.5402 20 6 -0.5411 -3.0670 -5.8006 21 6 -1.3384 -3.8608 -6.5686 22 6 -1.7524 -5.1185 -6.0930 23 7 -2.5348 -5.9111 -6.8338 24 6 -2.9064 -7.0807 -6.3661 25 6 -2.4935 -7.5063 -5.1017 26 7 -1.7244 -6.7442 -4.3563 27 6 -1.3310 -5.5530 -4.8129 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0068 30 1 3.0424 -4.9392 1.4103 31 1 2.9715 -3.2265 1.8893 32 1 1.3828 -4.5515 3.0838 33 1 1.7556 -5.6709 -0.7154 34 1 0.3131 -4.9201 0.0085 35 1 1.0063 -3.4630 -2.3094 36 1 0.5113 -2.8271 -3.9513 37 1 -0.2300 -2.1040 -6.1777 38 1 -1.6535 -3.5238 -7.5451 39 1 -3.5385 -7.7195 -6.9649 40 1 -2.8084 -8.4714 -4.7332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676592851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:27 Heat of formation + Delta-G solvation = 9.143284 kcal Electronic energy + Delta-G solvation = -25695.017875 eV Core-core repulsion = 21896.839861 eV Total energy + Delta-G solvation = -3798.178013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.52692 -39.27095 -37.39286 -36.97358 -34.95410 -34.64331 -33.48995 -31.64730 -30.92193 -30.60504 -28.28238 -25.74924 -25.31486 -24.16551 -23.72821 -22.96097 -20.24436 -19.98387 -18.79657 -18.34958 -17.59994 -16.97264 -16.61826 -16.31206 -15.59846 -15.33019 -15.10615 -14.85479 -14.49152 -14.26168 -14.13582 -13.95117 -13.45540 -13.34624 -12.92179 -12.83278 -12.29895 -12.10507 -11.92521 -11.84374 -11.64839 -11.62632 -11.37814 -10.91028 -10.86175 -10.56821 -10.12440 -9.82304 -9.73298 -9.37138 -9.12458 -9.02072 -8.93365 -8.74736 -8.45551 -7.06510 -5.83979 -3.14648 -0.08153 0.43650 1.62074 2.55961 3.35853 3.38052 3.42321 3.44371 3.48260 3.87530 4.03677 4.05573 4.22187 4.49962 4.61161 4.69470 4.87228 4.92991 4.97064 5.10953 5.21881 5.39921 5.50555 5.55658 5.61766 5.68396 5.84562 5.90501 6.00697 6.03760 6.05327 6.09034 6.37644 6.47252 6.51008 6.75198 6.93864 7.17113 7.59877 7.66842 7.98368 8.21022 8.32791 8.64927 9.45081 10.00536 10.37376 11.37344 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.003713 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.491665 B = 7539.261057 C = 9087.743346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.714 5.714 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.548 3.452 17 O -0.512 6.512 18 C -0.093 4.093 19 C -0.055 4.055 20 C -0.101 4.101 21 C -0.066 4.066 22 C 0.070 3.930 23 N -0.427 5.427 24 C 0.071 3.929 25 C 0.070 3.930 26 N -0.385 5.385 27 C 0.113 3.887 28 H 0.256 0.744 29 H 0.389 0.611 30 H 0.027 0.973 31 H 0.048 0.952 32 H 0.364 0.636 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.406 0.594 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.173 0.827 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.810 -11.391 -11.538 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.003 4.003 15 N -0.364 5.364 16 C 0.333 3.667 17 O -0.388 6.388 18 C -0.098 4.098 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.086 4.086 22 C -0.055 4.055 23 N -0.142 5.142 24 C -0.104 4.104 25 C -0.105 4.105 26 N -0.098 5.098 27 C -0.013 4.013 28 H 0.066 0.934 29 H 0.224 0.776 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.208 0.792 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.243 0.757 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.191 0.809 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.089 -11.663 -11.741 16.585 hybrid contribution 0.531 1.273 0.508 1.470 sum -0.558 -10.390 -11.233 15.312 Atomic orbital electron populations 1.69682 1.05073 1.25733 1.56705 1.24742 0.95427 0.97601 1.02612 0.86239 0.78667 0.83994 0.77496 1.21679 1.21814 1.20838 1.19217 0.90916 0.84043 1.43818 0.91185 1.42392 1.06086 0.99044 1.88035 1.20603 0.95022 0.87033 0.91939 0.91651 1.23020 0.86521 0.97245 0.95389 1.86576 1.32128 1.91673 1.25930 1.21545 0.99537 0.96808 0.82428 1.45920 1.50741 1.21521 1.18181 1.17845 0.79551 0.84967 0.84298 1.90814 1.55290 1.21367 1.71346 1.20013 0.99709 0.94582 0.95496 1.21763 0.96344 0.94131 0.95379 1.20999 0.96921 1.00392 0.93777 1.20957 0.96013 0.91187 1.00412 1.19516 0.97560 0.96180 0.92208 1.68676 1.08369 1.04007 1.33103 1.24061 0.97690 0.93384 0.95291 1.24252 0.93925 1.00449 0.91873 1.69036 1.06569 1.02326 1.31851 1.19310 0.97007 0.92633 0.92359 0.93413 0.77642 0.95511 0.93322 0.79159 0.92034 0.90492 0.75685 0.83469 0.83779 0.84001 0.80946 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 13.06 55.49 0.72 -25.99 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.38 9.93 -15.06 -0.15 -6.53 16 8 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.71 -16.69 4.51 -53.42 -0.24 -16.93 16 10 C 0.17 3.10 2.84 -67.93 -0.19 2.91 16 11 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.06 1.03 6.86 37.16 0.25 1.28 16 13 O -0.56 -10.02 12.64 -35.23 -0.45 -10.46 16 14 C 0.12 2.19 5.12 -4.04 -0.02 2.16 16 15 N -0.71 -12.47 5.34 -61.35 -0.33 -12.80 16 16 C 0.55 10.14 7.77 -12.48 -0.10 10.05 16 17 O -0.51 -10.93 15.19 5.29 0.08 -10.85 16 18 C -0.09 -1.50 5.90 -104.62 -0.62 -2.12 16 19 C -0.06 -0.73 9.52 -39.14 -0.37 -1.10 16 20 C -0.10 -1.09 9.93 -40.03 -0.40 -1.49 16 21 C -0.07 -0.75 9.97 -39.38 -0.39 -1.14 16 22 C 0.07 0.96 6.59 -84.82 -0.56 0.40 16 23 N -0.43 -5.40 10.46 -10.82 -0.11 -5.51 16 24 C 0.07 0.71 11.21 -17.24 -0.19 0.52 16 25 C 0.07 0.80 11.22 -17.19 -0.19 0.61 16 26 N -0.38 -6.23 8.56 -10.59 -0.09 -6.32 16 27 C 0.11 1.80 6.60 -84.52 -0.56 1.25 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.39 10.18 7.80 -40.82 -0.32 9.86 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.36 4.69 9.12 45.56 0.42 5.11 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.08 1.58 7.39 -51.93 -0.38 1.19 16 35 H 0.41 6.87 6.16 -40.82 -0.25 6.62 16 36 H 0.15 1.82 6.37 -52.49 -0.33 1.48 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.17 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -35.16 347.29 -7.58 -42.74 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -3.80 Total: 18.19 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -3.58 Total: 6.51 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -0.05 Total: -67.55 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.36 Total: -21.31 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.16 -7.58 -42.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.886 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds