Wall clock time and date at job start Tue Mar 31 2020 04:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00197 * 2 1 4 4 H 1.07993 * 120.00543 * 154.90920 * 3 2 1 5 5 C 1.38819 * 119.99532 * 334.90899 * 3 2 1 6 6 N 1.31621 * 120.00282 * 4.76237 * 5 3 2 7 7 Si 1.86807 * 119.99721 * 184.76449 * 5 3 2 8 8 H 1.48493 * 109.46927 * 59.99915 * 7 5 3 9 9 H 1.48498 * 109.46652 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46921 * 299.99712 * 7 5 3 11 11 C 1.46500 * 120.00072 * 179.97438 * 2 1 3 12 12 H 1.08991 * 110.64448 * 181.69051 * 11 2 1 13 13 C 1.55167 * 110.71988 * 305.02860 * 11 2 1 14 14 C 1.54909 * 101.58257 * 153.86560 * 13 11 2 15 15 N 1.47427 * 104.83033 * 322.98994 * 14 13 11 16 16 C 1.34780 * 125.64552 * 204.09493 * 15 14 13 17 17 O 1.21544 * 119.99930 * 174.19948 * 16 15 14 18 18 C 1.47872 * 119.99909 * 354.19932 * 16 15 14 19 19 C 1.39448 * 121.11920 * 334.19141 * 18 16 15 20 20 C 1.38613 * 119.37947 * 180.02562 * 19 18 16 21 21 N 1.31586 * 121.63525 * 0.02562 * 20 19 18 22 22 C 1.32210 * 121.86668 * 359.97438 * 21 20 19 23 23 N 1.37216 * 134.67493 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.86756 * 0.03085 * 23 22 21 25 25 N 1.28780 * 108.26046 * 179.97438 * 23 22 21 26 26 N 1.28689 * 111.75858 * 0.02562 * 25 23 22 27 27 C 1.34390 * 109.15535 * 359.72857 * 26 25 23 28 28 C 1.47020 * 108.70305 * 24.12726 * 15 14 13 29 29 H 1.09004 * 109.46685 * 84.84297 * 1 2 3 30 30 H 1.08999 * 109.47203 * 204.84024 * 1 2 3 31 31 H 1.08996 * 109.47017 * 324.83955 * 1 2 3 32 32 H 0.96996 * 119.99873 * 179.97438 * 6 5 3 33 33 H 1.09003 * 110.99927 * 271.93617 * 13 11 2 34 34 H 1.08994 * 111.00223 * 35.78564 * 13 11 2 35 35 H 1.08996 * 110.36855 * 204.14991 * 14 13 11 36 36 H 1.08996 * 110.45941 * 81.87004 * 14 13 11 37 37 H 1.08006 * 120.30749 * 0.02562 * 19 18 16 38 38 H 1.08003 * 119.18314 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.88325 * 239.52452 * 28 15 14 40 40 H 1.08998 * 109.88202 * 118.36023 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1533 1.2300 0.3966 5 6 1.5539 2.3313 -0.5098 6 7 0.2993 2.2996 -0.9067 7 14 2.5326 3.9177 -0.6327 8 1 3.7113 3.7052 -1.5106 9 1 1.6743 4.9857 -1.2053 10 1 2.9900 4.3232 0.7206 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 0.0306 13 6 1.7506 -2.1601 1.1894 14 6 2.0638 -3.5781 0.6499 15 7 1.7325 -3.5174 -0.7854 16 6 1.4057 -4.5699 -1.5613 17 8 1.0482 -4.3910 -2.7091 18 6 1.4821 -5.9423 -1.0161 19 6 2.3458 -6.2537 0.0335 20 6 2.3886 -7.5523 0.5164 21 7 1.6336 -8.5028 0.0085 22 6 0.7950 -8.2710 -0.9870 23 7 -0.0911 -9.0382 -1.7005 24 1 -0.2592 -9.9842 -1.5675 25 7 -0.6620 -8.2861 -2.5761 26 7 -0.2352 -7.0736 -2.5146 27 6 0.6808 -6.9777 -1.5359 28 6 1.8183 -2.1187 -1.2303 29 1 -0.3633 0.0924 -1.0236 30 1 -0.3633 -0.9326 0.4317 31 1 -0.3633 0.8401 0.5918 32 1 -0.1171 3.1001 -1.2625 33 1 2.3373 -1.9435 2.0822 34 1 0.6850 -2.0434 1.3861 35 1 1.4431 -4.3205 1.1514 36 1 3.1194 -3.8129 0.7858 37 1 2.9754 -5.4902 0.4662 38 1 3.0590 -7.7901 1.3291 39 1 0.8541 -1.7944 -1.6219 40 1 2.5849 -2.0206 -1.9989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971918937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:05 Heat of formation + Delta-G solvation = 145.585372 kcal Electronic energy + Delta-G solvation = -26067.954624 eV Core-core repulsion = 22307.985935 eV Total energy + Delta-G solvation = -3759.968689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.68955 -40.28431 -38.95111 -37.46630 -34.92559 -34.44895 -32.54928 -31.43555 -31.12135 -29.80972 -28.03062 -26.10505 -25.91969 -24.29263 -23.88090 -22.82898 -22.42693 -20.45354 -19.27198 -19.10177 -18.23334 -17.43496 -17.14060 -16.88093 -15.98563 -15.75942 -15.44886 -15.03603 -14.76426 -13.99799 -13.67790 -13.55431 -13.40753 -13.12418 -12.68471 -12.60705 -12.56710 -12.24939 -11.98186 -11.95604 -11.77717 -11.44511 -10.90654 -10.84644 -10.60422 -10.38104 -10.36521 -10.33020 -9.96593 -9.87876 -9.66267 -9.57609 -9.37060 -8.55512 -8.41287 -6.83872 -5.79541 -3.28024 -0.21839 0.54333 1.82239 1.92232 2.68834 2.89977 3.35685 3.36748 3.41633 3.42396 3.44323 3.92231 4.07397 4.19211 4.42114 4.44531 4.72755 4.94140 4.99015 5.14587 5.18967 5.28523 5.34871 5.42071 5.58285 5.70865 5.81402 5.85973 5.92551 6.26362 6.28052 6.30355 6.44195 6.60715 6.81316 6.84837 7.12520 7.44618 7.61829 7.71656 7.82533 7.87550 8.19922 8.35002 9.18045 9.77952 10.27408 11.24315 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002935 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.482253 B = 9539.351607 C =10054.639895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.588 5.588 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.009 3.991 6 N -0.905 5.905 7 Si 0.906 3.094 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.155 4.155 14 C 0.093 3.907 15 N -0.603 5.603 16 C 0.560 3.440 17 O -0.506 6.506 18 C 0.004 3.996 19 C -0.153 4.153 20 C 0.162 3.838 21 N -0.463 5.463 22 C 0.214 3.786 23 N -0.407 5.407 24 H 0.457 0.543 25 N 0.001 4.999 26 N -0.211 5.211 27 C 0.001 3.999 28 C 0.087 3.913 29 H 0.025 0.975 30 H -0.005 1.005 31 H 0.057 0.943 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.076 0.924 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -21.809 6.607 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.309 5.309 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.190 4.190 6 N -0.549 5.549 7 Si 0.736 3.264 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.063 3.937 12 H 0.099 0.901 13 C -0.195 4.195 14 C -0.030 4.030 15 N -0.337 5.337 16 C 0.346 3.654 17 O -0.381 6.381 18 C -0.013 4.013 19 C -0.176 4.176 20 C -0.010 4.010 21 N -0.177 5.177 22 C -0.029 4.029 23 N -0.137 5.137 24 H 0.305 0.695 25 N 0.018 4.982 26 N -0.087 5.087 27 C -0.128 4.128 28 C -0.037 4.037 29 H 0.044 0.956 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.186 0.814 38 H 0.200 0.800 39 H 0.095 0.905 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.148 -22.280 4.935 23.036 hybrid contribution 0.992 0.871 0.431 1.389 sum 4.140 -21.409 5.366 22.456 Atomic orbital electron populations 1.20909 0.82085 0.95651 0.99480 1.43899 1.02057 0.99791 1.85128 1.19167 0.99286 0.86038 1.34867 0.91131 1.25197 0.96450 0.98917 0.98394 1.70086 1.10772 1.28246 1.45765 0.86317 0.79357 0.82835 0.77907 1.20836 1.21577 1.20952 1.21363 0.96467 0.85969 0.89905 0.90138 1.23403 1.03152 0.92805 1.00149 1.22649 0.99659 0.99759 0.80939 1.48435 1.66884 1.07894 1.10489 1.17544 0.79206 0.82897 0.85725 1.90873 1.44998 1.84858 1.17353 1.19702 0.94043 0.93238 0.94307 1.22882 0.99514 0.99458 0.95756 1.22869 0.93910 0.87237 0.96977 1.66313 1.05487 1.37078 1.08835 1.19847 0.96860 0.89433 0.96790 1.44694 1.29805 1.13457 1.25763 0.69493 1.78261 1.14761 0.97594 1.07555 1.75569 1.09769 1.07670 1.15660 1.20145 1.00477 0.93984 0.98243 1.23035 1.02765 0.77885 1.00059 0.95631 0.98636 0.92439 0.93462 0.90125 0.90223 0.90944 0.90989 0.81422 0.80020 0.90533 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.70 59.85 0.46 4.38 16 2 N -0.59 -13.87 2.94 -171.39 -0.50 -14.37 16 3 C -0.26 -6.88 9.62 -15.06 -0.14 -7.03 16 4 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 5 C 0.01 0.25 5.39 -17.43 -0.09 0.16 16 6 N -0.90 -25.71 10.09 55.49 0.56 -25.15 16 7 Si 0.91 21.16 29.56 -169.99 -5.02 16.14 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.17 3.20 3.45 -66.09 -0.23 2.97 16 12 H 0.08 1.42 7.94 -51.93 -0.41 1.01 16 13 C -0.16 -2.21 6.59 -24.58 -0.16 -2.37 16 14 C 0.09 1.04 5.04 -2.53 -0.01 1.03 16 15 N -0.60 -9.31 3.33 -171.63 -0.57 -9.88 16 16 C 0.56 9.44 7.66 -12.32 -0.09 9.34 16 17 O -0.51 -10.76 16.96 5.33 0.09 -10.67 16 18 C 0.00 0.05 5.68 -104.51 -0.59 -0.54 16 19 C -0.15 -1.30 8.19 -38.99 -0.32 -1.62 16 20 C 0.16 1.13 11.14 -17.52 -0.20 0.94 16 21 N -0.46 -4.41 10.35 -12.38 -0.13 -4.54 16 22 C 0.21 2.44 8.56 -156.20 -1.34 1.10 16 23 N -0.41 -3.89 7.06 31.11 0.22 -3.67 16 24 H 0.46 2.30 8.96 -190.26 -1.71 0.59 16 25 N 0.00 0.02 13.29 60.35 0.80 0.82 16 26 N -0.21 -3.43 12.19 32.23 0.39 -3.03 16 27 C 0.00 0.01 6.97 -84.72 -0.59 -0.58 16 28 C 0.09 1.61 6.51 -3.07 -0.02 1.59 16 29 H 0.03 0.68 7.41 -51.93 -0.38 0.29 16 30 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16 31 H 0.06 1.50 6.96 -51.93 -0.36 1.14 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.27 6.14 -51.93 -0.32 0.95 16 35 H 0.07 0.68 6.91 -51.93 -0.36 0.32 16 36 H 0.07 0.59 6.86 -51.93 -0.36 0.23 16 37 H 0.17 1.01 4.86 -52.48 -0.26 0.75 16 38 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.08 1.67 7.06 -51.93 -0.37 1.31 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 329.29 15.07 4.96 4.96 Total: -1.00 -34.88 329.29 -8.18 -43.06 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.65 Total: -3.02 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -3.33 Total: 9.36 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.77 Total: -59.83 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.88 -8.18 -43.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971918937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.648 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds