Wall clock time and date at job start Tue Mar 31 2020 04:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00197 * 2 1 4 4 H 1.07993 * 120.00543 * 154.90920 * 3 2 1 5 5 C 1.38819 * 119.99532 * 334.90899 * 3 2 1 6 6 N 1.31621 * 120.00282 * 4.76237 * 5 3 2 7 7 Si 1.86807 * 119.99721 * 184.76449 * 5 3 2 8 8 H 1.48493 * 109.46927 * 59.99915 * 7 5 3 9 9 H 1.48498 * 109.46652 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46921 * 299.99712 * 7 5 3 11 11 C 1.46500 * 120.00072 * 179.97438 * 2 1 3 12 12 H 1.08991 * 110.64448 * 181.69051 * 11 2 1 13 13 C 1.55167 * 110.71988 * 305.02860 * 11 2 1 14 14 C 1.54909 * 101.58257 * 153.86560 * 13 11 2 15 15 N 1.47427 * 104.83033 * 322.98994 * 14 13 11 16 16 C 1.34780 * 125.64552 * 204.09493 * 15 14 13 17 17 O 1.21544 * 119.99930 * 174.19948 * 16 15 14 18 18 C 1.47872 * 119.99909 * 354.19932 * 16 15 14 19 19 C 1.39448 * 121.11920 * 334.19141 * 18 16 15 20 20 C 1.38613 * 119.37947 * 180.02562 * 19 18 16 21 21 N 1.31586 * 121.63525 * 0.02562 * 20 19 18 22 22 C 1.32210 * 121.86668 * 359.97438 * 21 20 19 23 23 N 1.37216 * 134.67493 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.86756 * 0.03085 * 23 22 21 25 25 N 1.28780 * 108.26046 * 179.97438 * 23 22 21 26 26 N 1.28689 * 111.75858 * 0.02562 * 25 23 22 27 27 C 1.34390 * 109.15535 * 359.72857 * 26 25 23 28 28 C 1.47020 * 108.70305 * 24.12726 * 15 14 13 29 29 H 1.09004 * 109.46685 * 84.84297 * 1 2 3 30 30 H 1.08999 * 109.47203 * 204.84024 * 1 2 3 31 31 H 1.08996 * 109.47017 * 324.83955 * 1 2 3 32 32 H 0.96996 * 119.99873 * 179.97438 * 6 5 3 33 33 H 1.09003 * 110.99927 * 271.93617 * 13 11 2 34 34 H 1.08994 * 111.00223 * 35.78564 * 13 11 2 35 35 H 1.08996 * 110.36855 * 204.14991 * 14 13 11 36 36 H 1.08996 * 110.45941 * 81.87004 * 14 13 11 37 37 H 1.08006 * 120.30749 * 0.02562 * 19 18 16 38 38 H 1.08003 * 119.18314 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.88325 * 239.52452 * 28 15 14 40 40 H 1.08998 * 109.88202 * 118.36023 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1533 1.2300 0.3966 5 6 1.5539 2.3313 -0.5098 6 7 0.2993 2.2996 -0.9067 7 14 2.5326 3.9177 -0.6327 8 1 3.7113 3.7052 -1.5106 9 1 1.6743 4.9857 -1.2053 10 1 2.9900 4.3232 0.7206 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 0.0306 13 6 1.7506 -2.1601 1.1894 14 6 2.0638 -3.5781 0.6499 15 7 1.7325 -3.5174 -0.7854 16 6 1.4057 -4.5699 -1.5613 17 8 1.0482 -4.3910 -2.7091 18 6 1.4821 -5.9423 -1.0161 19 6 2.3458 -6.2537 0.0335 20 6 2.3886 -7.5523 0.5164 21 7 1.6336 -8.5028 0.0085 22 6 0.7950 -8.2710 -0.9870 23 7 -0.0911 -9.0382 -1.7005 24 1 -0.2592 -9.9842 -1.5675 25 7 -0.6620 -8.2861 -2.5761 26 7 -0.2352 -7.0736 -2.5146 27 6 0.6808 -6.9777 -1.5359 28 6 1.8183 -2.1187 -1.2303 29 1 -0.3633 0.0924 -1.0236 30 1 -0.3633 -0.9326 0.4317 31 1 -0.3633 0.8401 0.5918 32 1 -0.1171 3.1001 -1.2625 33 1 2.3373 -1.9435 2.0822 34 1 0.6850 -2.0434 1.3861 35 1 1.4431 -4.3205 1.1514 36 1 3.1194 -3.8129 0.7858 37 1 2.9754 -5.4902 0.4662 38 1 3.0590 -7.7901 1.3291 39 1 0.8541 -1.7944 -1.6219 40 1 2.5849 -2.0206 -1.9989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971918937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:04 Heat of formation + Delta-G solvation = 118.481361 kcal Electronic energy + Delta-G solvation = -26069.129942 eV Core-core repulsion = 22307.985935 eV Total energy + Delta-G solvation = -3761.144007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.55771 -41.42627 -39.87533 -38.87979 -36.60935 -35.37201 -33.80362 -32.87646 -31.93597 -31.21028 -29.43426 -28.07596 -26.93792 -25.31059 -25.01118 -24.07114 -23.67993 -21.49223 -20.79195 -20.01272 -19.16285 -18.96542 -18.44495 -17.80675 -17.44337 -16.79008 -16.64923 -16.45229 -15.78799 -15.54811 -15.00085 -14.82567 -14.46793 -14.28648 -14.23172 -13.97521 -13.67358 -13.53028 -13.28572 -13.10220 -12.83813 -12.73578 -12.66795 -12.39258 -12.36583 -12.18329 -12.09300 -11.78662 -11.46667 -11.40142 -10.65172 -10.57850 -10.35792 -10.27793 -9.69936 -8.77892 -7.82942 -5.32628 -1.06436 -0.19876 0.94952 1.10945 1.49093 1.52419 1.58227 1.61486 1.76084 2.47728 2.52097 2.64682 3.09799 3.24929 3.31961 3.33860 3.60227 3.73513 3.85698 3.96939 4.10033 4.31855 4.33434 4.34285 4.39241 4.50221 4.65619 4.75578 4.83527 4.91408 5.05970 5.18205 5.23886 5.28314 5.37821 5.49256 5.65377 5.67251 5.78046 6.34642 6.40626 6.42486 6.95998 6.97918 7.16225 7.85939 8.31727 9.20453 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002935 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.482253 B = 9539.351607 C =10054.639895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.605 5.605 3 C -0.264 4.264 4 H 0.086 0.914 5 C -0.054 4.054 6 N -0.942 5.942 7 Si 0.971 3.029 8 H -0.277 1.277 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.167 3.833 12 H 0.095 0.905 13 C -0.143 4.143 14 C 0.093 3.907 15 N -0.600 5.600 16 C 0.557 3.443 17 O -0.570 6.570 18 C -0.033 4.033 19 C -0.115 4.115 20 C 0.183 3.817 21 N -0.460 5.460 22 C 0.212 3.788 23 N -0.380 5.380 24 H 0.475 0.525 25 N -0.011 5.011 26 N -0.271 5.271 27 C -0.030 4.030 28 C 0.097 3.903 29 H -0.015 1.015 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.246 0.754 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.203 0.797 38 H 0.244 0.756 39 H 0.029 0.971 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.950 -24.458 10.407 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.327 5.327 3 C -0.394 4.394 4 H 0.104 0.896 5 C -0.248 4.248 6 N -0.589 5.589 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.228 1.228 10 H -0.196 1.196 11 C 0.058 3.942 12 H 0.114 0.886 13 C -0.183 4.183 14 C -0.028 4.028 15 N -0.333 5.333 16 C 0.345 3.655 17 O -0.449 6.449 18 C -0.049 4.049 19 C -0.137 4.137 20 C 0.010 3.990 21 N -0.174 5.174 22 C -0.031 4.031 23 N -0.114 5.114 24 H 0.327 0.673 25 N 0.006 4.994 26 N -0.146 5.146 27 C -0.160 4.160 28 C -0.029 4.029 29 H 0.004 0.996 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.220 0.780 38 H 0.259 0.741 39 H 0.048 0.952 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.550 -25.007 8.774 27.299 hybrid contribution 0.039 1.557 -0.635 1.682 sum 6.589 -23.450 8.139 25.682 Atomic orbital electron populations 1.20481 0.83176 0.95640 0.96683 1.44083 1.01797 1.01291 1.85483 1.19637 0.99574 0.86888 1.33312 0.89633 1.26004 0.97323 1.02386 0.99127 1.70299 1.12433 1.28434 1.47717 0.85285 0.77723 0.78857 0.78233 1.20252 1.22841 1.19578 1.21633 0.96750 0.84337 0.91452 0.88648 1.23285 1.02316 0.93406 0.99248 1.23061 1.03349 0.98555 0.77794 1.48436 1.66441 1.06097 1.12332 1.18177 0.77758 0.84477 0.85048 1.90830 1.47847 1.86008 1.20264 1.19515 0.97270 0.90777 0.97300 1.23356 0.96732 1.01062 0.92593 1.23945 0.92651 0.85723 0.96720 1.66539 1.05195 1.37794 1.07891 1.19912 0.97524 0.88368 0.97324 1.44692 1.28402 1.14044 1.24272 0.67260 1.78147 1.15347 0.97349 1.08551 1.75494 1.12038 1.09139 1.17978 1.20490 1.01001 0.95833 0.98668 1.22604 0.99822 0.80439 1.00010 0.99642 0.96049 0.95171 0.94453 0.87046 0.92240 0.87893 0.85839 0.77990 0.74050 0.95232 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.33 7.70 127.77 0.98 10.31 16 2 N -0.61 -28.83 2.94 -696.14 -2.05 -30.88 16 3 C -0.26 -13.76 9.62 84.04 0.81 -12.95 16 4 H 0.09 4.12 7.82 -2.91 -0.02 4.09 16 5 C -0.05 -2.96 5.39 84.86 0.46 -2.50 16 6 N -0.94 -56.15 10.09 21.65 0.22 -55.93 16 7 Si 0.97 44.13 29.56 68.60 2.03 46.16 16 8 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 9 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 C 0.17 5.92 3.45 46.18 0.16 6.08 16 12 H 0.10 3.11 7.94 -2.39 -0.02 3.09 16 13 C -0.14 -3.56 6.59 31.99 0.21 -3.35 16 14 C 0.09 1.62 5.04 86.85 0.44 2.06 16 15 N -0.60 -17.77 3.33 -815.18 -2.71 -20.48 16 16 C 0.56 18.89 7.66 86.79 0.66 19.56 16 17 O -0.57 -26.00 16.96 -3.86 -0.07 -26.06 16 18 C -0.03 -0.81 5.68 -19.79 -0.11 -0.93 16 19 C -0.11 -1.31 8.19 22.65 0.19 -1.12 16 20 C 0.18 1.32 11.14 84.82 0.94 2.27 16 21 N -0.46 -6.62 10.35 -193.09 -2.00 -8.62 16 22 C 0.21 4.39 8.56 134.17 1.15 5.54 16 23 N -0.38 -6.91 7.06 -55.47 -0.39 -7.30 16 24 H 0.48 4.04 8.96 -219.84 -1.97 2.07 16 25 N -0.01 -0.31 13.29 37.02 0.49 0.19 16 26 N -0.27 -9.30 12.19 -51.93 -0.63 -9.93 16 27 C -0.03 -0.85 6.97 40.06 0.28 -0.57 16 28 C 0.10 3.67 6.51 86.73 0.56 4.23 16 29 H -0.01 -0.86 7.41 -2.39 -0.02 -0.88 16 30 H 0.02 0.94 6.13 -2.39 -0.01 0.92 16 31 H 0.03 1.64 6.96 -2.39 -0.02 1.63 16 32 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 1.75 6.14 -2.39 -0.01 1.73 16 35 H 0.10 1.28 6.91 -2.39 -0.02 1.26 16 36 H 0.12 1.01 6.86 -2.39 -0.02 1.00 16 37 H 0.20 0.80 4.86 -2.91 -0.01 0.78 16 38 H 0.24 -1.09 8.06 -2.91 -0.02 -1.11 16 39 H 0.03 1.39 7.06 -2.38 -0.02 1.37 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -87.03 329.29 0.77 -86.26 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -0.85 Total: -2.01 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: 6.73 Total: 28.62 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -7.07 Total: -132.97 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.07 Total: -26.06 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -87.03 0.77 -86.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971918937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.740 kcal (2) G-P(sol) polarization free energy of solvation -87.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds