Wall clock time and date at job start Tue Mar 31 2020 04:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00171 * 2 1 4 4 C 1.53000 * 109.47173 * 95.28302 * 3 2 1 5 5 H 1.09008 * 112.96130 * 66.11337 * 4 3 2 6 6 C 1.53944 * 113.77168 * 294.43554 * 4 3 2 7 7 C 1.53943 * 86.28795 * 222.09069 * 6 4 3 8 8 N 1.47580 * 113.77122 * 197.79018 * 4 3 2 9 9 C 1.36934 * 134.49170 * 318.94171 * 8 4 3 10 10 H 1.08001 * 120.00529 * 5.53962 * 9 8 4 11 11 C 1.38814 * 120.00005 * 185.54893 * 9 8 4 12 12 N 1.31616 * 119.99742 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00188 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46995 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47439 * 119.99417 * 13 11 9 16 16 H 1.48501 * 109.47172 * 239.99762 * 13 11 9 17 17 C 1.34782 * 119.99721 * 179.97438 * 2 1 3 18 18 O 1.21522 * 119.99511 * 182.87670 * 17 2 1 19 19 C 1.48109 * 120.00055 * 2.88094 * 17 2 1 20 20 C 1.39828 * 119.37271 * 173.23484 * 19 17 2 21 21 C 1.36970 * 119.60506 * 179.72900 * 20 19 17 22 22 C 1.39809 * 118.25511 * 0.56304 * 21 20 19 23 23 N 1.34653 * 135.00862 * 179.72752 * 22 21 20 24 24 N 1.28669 * 109.16114 * 179.97438 * 23 22 21 25 25 N 1.28768 * 111.84959 * 359.97438 * 24 23 22 26 26 H 0.96998 * 125.85860 * 180.02562 * 25 24 23 27 27 C 1.37253 * 108.28003 * 0.02562 * 25 24 23 28 28 N 1.31957 * 134.71018 * 179.97438 * 27 25 24 29 29 H 1.09000 * 109.46754 * 263.89782 * 1 2 3 30 30 H 1.09002 * 109.46890 * 143.89767 * 1 2 3 31 31 H 1.08994 * 109.46700 * 23.89608 * 1 2 3 32 32 H 1.09000 * 109.46910 * 215.28763 * 3 2 1 33 33 H 1.09004 * 109.46937 * 335.28446 * 3 2 1 34 34 H 1.08998 * 113.74341 * 336.44015 * 6 4 3 35 35 H 1.09005 * 113.73749 * 107.64115 * 6 4 3 36 36 H 1.08999 * 113.76410 * 137.90958 * 7 6 4 37 37 H 1.09001 * 113.77278 * 269.19021 * 7 6 4 38 38 H 0.96999 * 119.99876 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.19316 * 359.97438 * 20 19 17 40 40 H 1.07995 * 120.87279 * 180.22198 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5676 1.6440 1.4364 5 1 3.2811 0.9532 1.8860 6 6 1.3524 1.9500 2.3305 7 6 2.1784 3.1278 2.8784 8 7 2.9277 3.0651 1.6060 9 6 3.6604 3.9630 0.8766 10 1 4.0458 3.6845 -0.0931 11 6 3.9080 5.2313 1.3837 12 7 3.4380 5.5709 2.5653 13 14 4.9081 6.4560 0.3891 14 1 5.3181 5.8333 -0.8951 15 1 4.0845 7.6608 0.1147 16 1 6.1172 6.8474 1.1572 17 6 2.1389 -1.1673 0.0005 18 8 3.3529 -1.1679 0.0533 19 6 1.3997 -2.4491 -0.0634 20 6 2.1109 -3.6446 -0.2056 21 6 1.4324 -4.8332 -0.2596 22 6 0.0369 -4.8029 -0.1812 23 7 -0.9386 -5.7309 -0.2037 24 7 -2.0798 -5.1468 -0.0935 25 7 -1.9565 -3.8688 0.0046 26 1 -2.6835 -3.2333 0.0968 27 6 -0.6200 -3.5602 -0.0435 28 7 0.0768 -2.4409 0.0097 29 1 -0.3633 -0.1092 1.0219 30 1 -0.3633 -0.8303 -0.6056 31 1 -0.3632 0.9395 -0.4163 32 1 3.1057 1.1639 -0.5937 33 1 1.5708 2.0501 -0.4297 34 1 0.4655 2.2564 1.7758 35 1 1.1451 1.1758 3.0693 36 1 1.6039 4.0452 3.0066 37 1 2.7769 2.8751 3.7537 38 1 3.6107 6.4572 2.9194 39 1 3.1889 -3.6310 -0.2686 40 1 1.9613 -5.7689 -0.3656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085630238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:34 Heat of formation + Delta-G solvation = 178.404600 kcal Electronic energy + Delta-G solvation = -25878.340401 eV Core-core repulsion = 22119.794860 eV Total energy + Delta-G solvation = -3758.545541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.81655 -40.57888 -38.78721 -37.68106 -35.49351 -34.62260 -32.34648 -32.09610 -31.41109 -28.64779 -27.83923 -26.84658 -25.45255 -24.32909 -23.32594 -23.15413 -22.53152 -20.28132 -19.22574 -19.08737 -18.78923 -17.49868 -17.06727 -16.62044 -16.14710 -15.74941 -15.35946 -14.94950 -14.43867 -14.16254 -14.10871 -13.78667 -13.34923 -13.21313 -12.88514 -12.85399 -12.57463 -12.37541 -12.21912 -12.11932 -11.83940 -11.39931 -11.06842 -10.86122 -10.73778 -10.43051 -10.40191 -9.88859 -9.73351 -9.70482 -9.58177 -9.49879 -9.42309 -8.78675 -8.38822 -6.84887 -5.75325 -3.06848 -0.31660 0.53338 1.66221 1.66904 2.52796 2.88101 3.27124 3.36823 3.40024 3.45968 3.48072 3.77462 3.92494 4.25836 4.34492 4.49162 4.89683 4.93931 5.17002 5.28802 5.33603 5.43623 5.46074 5.56816 5.67963 5.79889 5.81209 5.95106 6.01889 6.13616 6.17495 6.23891 6.42214 6.58271 6.70698 6.82376 6.92280 7.26871 7.38195 7.47487 7.59335 7.65515 7.99851 8.08980 9.06854 9.73253 10.63462 11.42572 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.002794 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.667765 B =10018.390188 C =10432.397980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.579 5.579 3 C 0.116 3.884 4 C 0.130 3.870 5 H 0.049 0.951 6 C -0.158 4.158 7 C 0.165 3.835 8 N -0.602 5.602 9 C -0.221 4.221 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.560 3.440 18 O -0.520 6.520 19 C 0.158 3.842 20 C -0.121 4.121 21 C -0.002 4.002 22 C -0.027 4.027 23 N -0.239 5.239 24 N 0.007 4.993 25 N -0.402 5.402 26 H 0.459 0.541 27 C 0.210 3.790 28 N -0.435 5.435 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.252 0.748 39 H 0.168 0.832 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 -19.627 -5.724 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.310 5.310 3 C -0.007 4.007 4 C 0.022 3.978 5 H 0.067 0.933 6 C -0.197 4.197 7 C 0.040 3.960 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.345 3.655 18 O -0.395 6.395 19 C 0.004 3.996 20 C -0.144 4.144 21 C -0.032 4.032 22 C -0.154 4.154 23 N -0.116 5.116 24 N 0.024 4.976 25 N -0.134 5.134 26 H 0.308 0.692 27 C -0.034 4.034 28 N -0.153 5.153 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.185 0.815 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.857 -19.735 -5.721 23.723 hybrid contribution 1.098 1.330 -0.286 1.748 sum -10.760 -18.405 -6.006 22.149 Atomic orbital electron populations 1.22456 0.78545 1.03106 1.02844 1.47753 1.07875 1.05768 1.69560 1.21960 0.96926 0.82313 0.99497 1.22512 0.93987 0.88737 0.92590 0.93332 1.23763 0.97448 0.99415 0.99059 1.22130 0.90395 0.94930 0.88551 1.46114 1.60395 1.03839 1.22470 1.19071 1.25791 0.91763 0.98288 0.90213 1.24800 1.00979 0.97871 0.96784 1.69842 1.49400 1.20000 1.17532 0.86090 0.79651 0.81241 0.79066 1.20408 1.21796 1.21773 1.17702 0.86593 0.82533 0.78715 1.90851 1.12385 1.86209 1.50086 1.21465 0.87290 0.95357 0.95452 1.21775 1.03162 0.90495 0.98981 1.20532 0.89138 0.99822 0.93738 1.20691 0.96285 0.90963 1.07483 1.75410 0.93658 1.24992 1.17533 1.78115 1.19562 0.88556 1.11366 1.44670 1.06178 1.07459 1.55046 0.69239 1.20094 0.86332 0.92393 1.04580 1.67177 1.07493 1.25890 1.14694 0.92414 0.88188 0.91773 0.90419 0.89451 0.90999 0.93450 0.91563 0.95490 0.93750 0.81469 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.06 59.85 0.54 1.35 16 2 N -0.58 -8.27 2.78 -182.59 -0.51 -8.78 16 3 C 0.12 2.03 5.28 -4.04 -0.02 2.01 16 4 C 0.13 2.67 4.54 -66.87 -0.30 2.37 16 5 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 6 C -0.16 -2.96 7.42 -25.80 -0.19 -3.15 16 7 C 0.17 3.91 7.39 -2.85 -0.02 3.89 16 8 N -0.60 -15.31 3.58 -169.73 -0.61 -15.91 16 9 C -0.22 -6.15 10.51 -15.06 -0.16 -6.31 16 10 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -27.40 11.55 55.49 0.64 -26.76 16 13 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 C 0.56 8.14 7.61 -12.21 -0.09 8.05 16 18 O -0.52 -9.14 16.00 5.35 0.09 -9.06 16 19 C 0.16 1.81 6.64 -82.94 -0.55 1.26 16 20 C -0.12 -1.11 9.55 -39.45 -0.38 -1.48 16 21 C 0.00 -0.01 10.16 -39.45 -0.40 -0.41 16 22 C -0.03 -0.27 7.38 -84.90 -0.63 -0.89 16 23 N -0.24 -2.56 12.43 32.12 0.40 -2.16 16 24 N 0.01 0.07 13.28 60.35 0.80 0.87 16 25 N -0.40 -2.95 7.06 31.13 0.22 -2.73 16 26 H 0.46 1.64 8.96 -190.26 -1.71 -0.06 16 27 C 0.21 2.00 8.56 -156.27 -1.34 0.66 16 28 N -0.43 -4.47 5.98 -8.90 -0.05 -4.53 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.98 5.16 -53.88 -0.28 0.70 16 31 H 0.06 0.66 7.78 -51.93 -0.40 0.26 16 32 H 0.08 1.47 7.63 -51.93 -0.40 1.07 16 33 H 0.09 1.51 7.78 -51.93 -0.40 1.11 16 34 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.70 7.44 -51.93 -0.39 1.31 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 39 H 0.17 1.36 7.62 -52.49 -0.40 0.96 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -34.11 340.38 -8.60 -42.71 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.05 Total: -2.94 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -3.63 Total: 7.01 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.89 Total: -60.00 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.11 -8.60 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085630238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.117 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds