Wall clock time and date at job start Tue Mar 31 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00171 * 2 1 4 4 C 1.53000 * 109.47173 * 95.28302 * 3 2 1 5 5 H 1.09008 * 112.96130 * 66.11337 * 4 3 2 6 6 C 1.53944 * 113.77168 * 294.43554 * 4 3 2 7 7 C 1.53943 * 86.28795 * 222.09069 * 6 4 3 8 8 N 1.47580 * 113.77122 * 197.79018 * 4 3 2 9 9 C 1.36934 * 134.49170 * 318.94171 * 8 4 3 10 10 H 1.08001 * 120.00529 * 5.53962 * 9 8 4 11 11 C 1.38814 * 120.00005 * 185.54893 * 9 8 4 12 12 N 1.31616 * 119.99742 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00188 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46995 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47439 * 119.99417 * 13 11 9 16 16 H 1.48501 * 109.47172 * 239.99762 * 13 11 9 17 17 C 1.34782 * 119.99721 * 179.97438 * 2 1 3 18 18 O 1.21522 * 119.99511 * 182.87670 * 17 2 1 19 19 C 1.48109 * 120.00055 * 2.88094 * 17 2 1 20 20 C 1.39828 * 119.37271 * 173.23484 * 19 17 2 21 21 C 1.36970 * 119.60506 * 179.72900 * 20 19 17 22 22 C 1.39809 * 118.25511 * 0.56304 * 21 20 19 23 23 N 1.34653 * 135.00862 * 179.72752 * 22 21 20 24 24 N 1.28669 * 109.16114 * 179.97438 * 23 22 21 25 25 N 1.28768 * 111.84959 * 359.97438 * 24 23 22 26 26 H 0.96998 * 125.85860 * 180.02562 * 25 24 23 27 27 C 1.37253 * 108.28003 * 0.02562 * 25 24 23 28 28 N 1.31957 * 134.71018 * 179.97438 * 27 25 24 29 29 H 1.09000 * 109.46754 * 263.89782 * 1 2 3 30 30 H 1.09002 * 109.46890 * 143.89767 * 1 2 3 31 31 H 1.08994 * 109.46700 * 23.89608 * 1 2 3 32 32 H 1.09000 * 109.46910 * 215.28763 * 3 2 1 33 33 H 1.09004 * 109.46937 * 335.28446 * 3 2 1 34 34 H 1.08998 * 113.74341 * 336.44015 * 6 4 3 35 35 H 1.09005 * 113.73749 * 107.64115 * 6 4 3 36 36 H 1.08999 * 113.76410 * 137.90958 * 7 6 4 37 37 H 1.09001 * 113.77278 * 269.19021 * 7 6 4 38 38 H 0.96999 * 119.99876 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.19316 * 359.97438 * 20 19 17 40 40 H 1.07995 * 120.87279 * 180.22198 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5676 1.6440 1.4364 5 1 3.2811 0.9532 1.8860 6 6 1.3524 1.9500 2.3305 7 6 2.1784 3.1278 2.8784 8 7 2.9277 3.0651 1.6060 9 6 3.6604 3.9630 0.8766 10 1 4.0458 3.6845 -0.0931 11 6 3.9080 5.2313 1.3837 12 7 3.4380 5.5709 2.5653 13 14 4.9081 6.4560 0.3891 14 1 5.3181 5.8333 -0.8951 15 1 4.0845 7.6608 0.1147 16 1 6.1172 6.8474 1.1572 17 6 2.1389 -1.1673 0.0005 18 8 3.3529 -1.1679 0.0533 19 6 1.3997 -2.4491 -0.0634 20 6 2.1109 -3.6446 -0.2056 21 6 1.4324 -4.8332 -0.2596 22 6 0.0369 -4.8029 -0.1812 23 7 -0.9386 -5.7309 -0.2037 24 7 -2.0798 -5.1468 -0.0935 25 7 -1.9565 -3.8688 0.0046 26 1 -2.6835 -3.2333 0.0968 27 6 -0.6200 -3.5602 -0.0435 28 7 0.0768 -2.4409 0.0097 29 1 -0.3633 -0.1092 1.0219 30 1 -0.3633 -0.8303 -0.6056 31 1 -0.3632 0.9395 -0.4163 32 1 3.1057 1.1639 -0.5937 33 1 1.5708 2.0501 -0.4297 34 1 0.4655 2.2564 1.7758 35 1 1.1451 1.1758 3.0693 36 1 1.6039 4.0452 3.0066 37 1 2.7769 2.8751 3.7537 38 1 3.6107 6.4572 2.9194 39 1 3.1889 -3.6310 -0.2686 40 1 1.9613 -5.7689 -0.3656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085630238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:33 Heat of formation + Delta-G solvation = 155.279167 kcal Electronic energy + Delta-G solvation = -25879.343195 eV Core-core repulsion = 22119.794860 eV Total energy + Delta-G solvation = -3759.548335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.52812 -41.59881 -39.98621 -39.13573 -36.66910 -35.39060 -34.22679 -33.01159 -32.25435 -29.96909 -29.84133 -27.80188 -26.42086 -25.34541 -25.11370 -24.03268 -23.78394 -21.42452 -20.80688 -19.95997 -19.58350 -18.79576 -18.25737 -17.78475 -17.36319 -16.92904 -16.68765 -16.37696 -15.91912 -15.44801 -15.35897 -14.84279 -14.50960 -14.23350 -14.00732 -13.92054 -13.87955 -13.57944 -13.33965 -13.27765 -12.97041 -12.82206 -12.69806 -12.58144 -12.33915 -12.21928 -11.82061 -11.59425 -11.49569 -11.26820 -10.85888 -10.43867 -10.41307 -10.19043 -9.66185 -8.89155 -7.89913 -5.22583 -1.08720 -0.17606 0.89156 1.00311 1.45504 1.47112 1.56955 1.59973 1.80016 2.48406 2.49147 2.57641 2.98925 3.19568 3.30809 3.40157 3.50218 3.66991 3.87776 4.11206 4.21842 4.25574 4.30453 4.45367 4.53946 4.70343 4.71806 4.75256 4.89922 4.94686 4.97821 5.05501 5.10987 5.20652 5.27411 5.44189 5.56135 5.59985 5.70352 5.94434 6.13666 6.33155 6.93100 6.93765 6.97399 7.62372 8.58716 9.28183 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.002794 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.667765 B =10018.390188 C =10432.397980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.579 5.579 3 C 0.132 3.868 4 C 0.130 3.870 5 H 0.030 0.970 6 C -0.123 4.123 7 C 0.157 3.843 8 N -0.628 5.628 9 C -0.228 4.228 10 H 0.083 0.917 11 C -0.068 4.068 12 N -0.955 5.955 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.290 1.290 16 H -0.296 1.296 17 C 0.559 3.441 18 O -0.558 6.558 19 C 0.145 3.855 20 C -0.119 4.119 21 C 0.013 3.987 22 C -0.035 4.035 23 N -0.261 5.261 24 N 0.008 4.992 25 N -0.381 5.381 26 H 0.475 0.525 27 C 0.202 3.798 28 N -0.431 5.431 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.009 0.991 38 H 0.248 0.752 39 H 0.175 0.825 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 -21.324 -6.834 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.309 5.309 3 C 0.008 3.992 4 C 0.023 3.977 5 H 0.047 0.953 6 C -0.161 4.161 7 C 0.031 3.969 8 N -0.355 5.355 9 C -0.356 4.356 10 H 0.101 0.899 11 C -0.261 4.261 12 N -0.604 5.604 13 Si 0.804 3.196 14 H -0.189 1.189 15 H -0.217 1.217 16 H -0.223 1.223 17 C 0.345 3.655 18 O -0.436 6.436 19 C -0.008 4.008 20 C -0.142 4.142 21 C -0.017 4.017 22 C -0.163 4.163 23 N -0.137 5.137 24 N 0.025 4.975 25 N -0.115 5.115 26 H 0.327 0.673 27 C -0.043 4.043 28 N -0.149 5.149 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.193 0.807 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.314 -21.465 -6.849 26.171 hybrid contribution 1.461 1.736 0.079 2.270 sum -11.852 -19.729 -6.770 23.991 Atomic orbital electron populations 1.22654 0.76222 1.04338 1.03703 1.47770 1.09088 1.04574 1.69500 1.21512 0.96763 0.84107 0.96783 1.22579 0.94163 0.85959 0.94962 0.95252 1.23506 0.96684 0.97358 0.98537 1.22104 0.90927 0.95971 0.87860 1.46504 1.60248 1.05791 1.22916 1.19438 1.25126 0.92396 0.98661 0.89895 1.25620 1.02594 0.99828 0.98018 1.70019 1.51042 1.20112 1.19227 0.85055 0.77707 0.78799 0.78075 1.18900 1.21653 1.22342 1.18122 0.86338 0.83451 0.77539 1.90827 1.14171 1.86943 1.51675 1.21022 0.87818 0.94351 0.97648 1.21842 1.03536 0.90066 0.98797 1.20842 0.88506 1.00573 0.91811 1.21024 0.97069 0.90944 1.07246 1.75417 0.94025 1.25543 1.18738 1.78068 1.19356 0.89205 1.10913 1.44696 1.06069 1.07200 1.53574 0.67293 1.20138 0.87010 0.92120 1.05002 1.67002 1.07045 1.26255 1.14600 0.91694 0.86774 0.90790 0.92350 0.88958 0.88935 0.90701 0.94067 0.97281 0.94339 0.80724 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 9.06 127.77 1.16 2.55 16 2 N -0.58 -15.74 2.78 -849.88 -2.36 -18.10 16 3 C 0.13 4.56 5.28 86.38 0.46 5.02 16 4 C 0.13 5.35 4.54 45.09 0.20 5.56 16 5 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 6 C -0.12 -4.42 7.42 31.25 0.23 -4.18 16 7 C 0.16 7.56 7.39 86.44 0.64 8.20 16 8 N -0.63 -32.40 3.58 -690.92 -2.47 -34.87 16 9 C -0.23 -12.82 10.51 84.03 0.88 -11.94 16 10 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 11 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 12 N -0.95 -58.34 11.55 21.65 0.25 -58.09 16 13 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 16 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 17 C 0.56 15.75 7.61 86.86 0.66 16.41 16 18 O -0.56 -19.70 16.00 -3.78 -0.06 -19.76 16 19 C 0.14 3.05 6.64 42.05 0.28 3.33 16 20 C -0.12 -1.95 9.55 22.36 0.21 -1.73 16 21 C 0.01 0.17 10.16 22.35 0.23 0.40 16 22 C -0.04 -0.61 7.38 39.83 0.29 -0.32 16 23 N -0.26 -4.98 12.43 -52.29 -0.65 -5.63 16 24 N 0.01 0.13 13.28 37.02 0.49 0.62 16 25 N -0.38 -4.56 7.06 -55.41 -0.39 -4.95 16 26 H 0.47 2.01 8.96 -219.84 -1.97 0.04 16 27 C 0.20 3.33 8.56 134.30 1.15 4.48 16 28 N -0.43 -7.83 5.98 -182.08 -1.09 -8.92 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.92 5.16 -6.25 -0.03 1.89 16 31 H 0.07 1.30 7.78 -2.39 -0.02 1.28 16 32 H 0.06 2.23 7.63 -2.39 -0.02 2.22 16 33 H 0.09 3.09 7.78 -2.38 -0.02 3.07 16 34 H 0.09 2.98 8.10 -2.39 -0.02 2.96 16 35 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.04 2.17 7.44 -2.39 -0.02 2.15 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.18 2.58 7.62 -2.91 -0.02 2.56 16 40 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -75.24 340.38 1.71 -73.53 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -0.89 Total: 3.59 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.86 Total: 24.33 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -6.23 Total: -129.94 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.06 Total: -19.76 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -75.24 1.71 -73.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085630238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.808 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds