Wall clock time and date at job start Tue Mar 31 2020 04:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 119.99976 * 2 1 4 4 C 1.53000 * 109.47557 * 262.81227 * 3 2 1 5 5 H 1.09000 * 112.96645 * 310.67229 * 4 3 2 6 6 C 1.53944 * 113.77133 * 178.98747 * 4 3 2 7 7 C 1.53946 * 86.29038 * 222.09384 * 6 4 3 8 8 N 1.47582 * 113.76525 * 82.49178 * 4 3 2 9 9 C 1.36938 * 134.49617 * 318.94547 * 8 4 3 10 10 H 1.08002 * 119.99495 * 333.94664 * 9 8 4 11 11 C 1.38813 * 120.00105 * 153.94882 * 9 8 4 12 12 N 1.31622 * 119.99831 * 168.88212 * 11 9 8 13 13 Si 1.86800 * 120.00082 * 348.88926 * 11 9 8 14 14 H 1.48499 * 109.47295 * 84.63030 * 13 11 9 15 15 H 1.48498 * 109.47158 * 204.63211 * 13 11 9 16 16 H 1.48499 * 109.46898 * 324.63238 * 13 11 9 17 17 C 1.34780 * 119.99897 * 180.02562 * 2 1 3 18 18 O 1.21570 * 119.99712 * 183.94311 * 17 2 1 19 19 C 1.47713 * 119.99956 * 3.94093 * 17 2 1 20 20 C 1.40121 * 120.35195 * 311.54830 * 19 17 2 21 21 N 1.31257 * 121.14767 * 180.02562 * 20 19 17 22 22 C 1.32716 * 121.80556 * 0.02562 * 21 20 19 23 23 N 1.37114 * 133.40860 * 179.97438 * 22 21 20 24 24 H 0.97004 * 126.59239 * 359.97438 * 23 22 21 25 25 N 1.40187 * 106.82080 * 179.97438 * 23 22 21 26 26 N 1.28669 * 109.50962 * 0.02562 * 25 23 22 27 27 C 1.35333 * 109.99901 * 0.02562 * 26 25 23 28 28 C 1.39426 * 120.35247 * 131.57506 * 19 17 2 29 29 H 1.08999 * 109.47425 * 266.31697 * 1 2 3 30 30 H 1.09001 * 109.47173 * 26.31835 * 1 2 3 31 31 H 1.09003 * 109.47464 * 146.31910 * 1 2 3 32 32 H 1.09005 * 109.47212 * 22.81606 * 3 2 1 33 33 H 1.09004 * 109.46952 * 142.81187 * 3 2 1 34 34 H 1.08999 * 113.74123 * 336.43581 * 6 4 3 35 35 H 1.09001 * 113.74183 * 107.64096 * 6 4 3 36 36 H 1.08997 * 113.76998 * 137.90622 * 7 6 4 37 37 H 1.08996 * 113.76991 * 269.19714 * 7 6 4 38 38 H 0.97001 * 119.99817 * 179.97438 * 12 11 9 39 39 H 1.08002 * 119.42431 * 0.02562 * 20 19 17 40 40 H 1.08000 * 120.95009 * 359.95471 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.6088 1.6202 -1.4311 5 1 3.0925 0.7927 -1.9501 6 6 3.3674 2.9546 -1.5487 7 6 2.5131 3.2148 -2.8027 8 7 1.5413 2.2734 -2.2134 9 6 0.1913 2.0826 -2.3411 10 1 -0.2365 1.1089 -2.1533 11 6 -0.6272 3.1407 -2.7118 12 7 -1.8802 2.9172 -3.0471 13 14 0.0497 4.8816 -2.7351 14 1 0.7311 5.1305 -4.0309 15 1 -1.0650 5.8484 -2.5683 16 1 1.0212 5.0497 -1.6247 17 6 2.1388 -1.1672 -0.0005 18 8 3.3524 -1.1685 0.0719 19 6 1.4028 -2.4449 -0.0890 20 6 0.3025 -2.6873 0.7440 21 7 -0.3624 -3.8172 0.6789 22 6 -0.0268 -4.7782 -0.1727 23 7 -0.5382 -6.0223 -0.4387 24 1 -1.2995 -6.4392 -0.0057 25 7 0.2506 -6.5760 -1.4568 26 7 1.1716 -5.7411 -1.7889 27 6 1.0666 -4.6158 -1.0445 28 6 1.7960 -3.4227 -1.0019 29 1 -0.3634 -0.0660 1.0255 30 1 -0.3633 0.9211 -0.4556 31 1 -0.3634 -0.8552 -0.5699 32 1 1.5587 2.0570 0.3985 33 1 3.0881 1.1740 0.6212 34 1 3.1677 3.6465 -0.7305 35 1 4.4310 2.8380 -1.7566 36 1 2.1438 4.2375 -2.8783 37 1 2.9686 2.8578 -3.7264 38 1 -2.4523 3.6566 -3.3059 39 1 -0.0038 -1.9314 1.4519 40 1 2.6399 -3.2639 -1.6569 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085642639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:23 Heat of formation + Delta-G solvation = 146.728665 kcal Electronic energy + Delta-G solvation = -26332.585529 eV Core-core repulsion = 22572.666416 eV Total energy + Delta-G solvation = -3759.919112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.56298 -41.37885 -39.96117 -39.14405 -36.44102 -35.21502 -34.38344 -32.94953 -32.18015 -30.59810 -29.55335 -27.61460 -26.22930 -25.53814 -25.03724 -24.05673 -23.77538 -21.21316 -20.69065 -19.88923 -19.36529 -19.00107 -17.93678 -17.67952 -17.37451 -17.24673 -16.84965 -16.47897 -15.91384 -15.34301 -15.25373 -14.79048 -14.67308 -14.46770 -14.25427 -14.21548 -13.81325 -13.69380 -13.25359 -13.13868 -12.98251 -12.93843 -12.75344 -12.71791 -12.56883 -12.09807 -11.93625 -11.49822 -11.33626 -11.24905 -10.71514 -10.67106 -10.52814 -10.20932 -9.61289 -8.88010 -8.07331 -5.40773 -0.99741 -0.47436 0.84414 0.87623 1.36923 1.43212 1.47263 1.53136 1.92190 2.36179 2.50146 2.66808 2.98316 3.03220 3.08276 3.27066 3.36419 3.47645 3.68865 3.84742 4.15651 4.25001 4.32705 4.41159 4.44562 4.50891 4.62162 4.62526 4.70098 4.74636 4.84828 4.93225 4.99236 5.04593 5.18095 5.44447 5.52246 5.64735 5.69037 6.25652 6.27301 6.38465 6.54952 6.63821 7.02947 7.55948 8.41903 9.12187 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.003717 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.196972 B = 7530.923299 C = 8176.830869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.588 5.588 3 C 0.123 3.877 4 C 0.132 3.868 5 H 0.047 0.953 6 C -0.123 4.123 7 C 0.082 3.918 8 N -0.641 5.641 9 C -0.207 4.207 10 H 0.079 0.921 11 C -0.033 4.033 12 N -0.962 5.962 13 Si 0.945 3.055 14 H -0.293 1.293 15 H -0.316 1.316 16 H -0.250 1.250 17 C 0.569 3.431 18 O -0.562 6.562 19 C -0.196 4.196 20 C 0.224 3.776 21 N -0.487 5.487 22 C 0.285 3.715 23 N -0.463 5.463 24 H 0.469 0.531 25 N 0.013 4.987 26 N -0.214 5.214 27 C -0.085 4.085 28 C 0.067 3.933 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.258 0.742 39 H 0.211 0.789 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -10.677 10.738 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.317 5.317 3 C 0.000 4.000 4 C 0.026 3.974 5 H 0.065 0.935 6 C -0.161 4.161 7 C -0.042 4.042 8 N -0.369 5.369 9 C -0.335 4.335 10 H 0.097 0.903 11 C -0.227 4.227 12 N -0.610 5.610 13 Si 0.777 3.223 14 H -0.221 1.221 15 H -0.246 1.246 16 H -0.174 1.174 17 C 0.356 3.644 18 O -0.442 6.442 19 C -0.204 4.204 20 C 0.050 3.950 21 N -0.201 5.201 22 C 0.040 3.960 23 N -0.191 5.191 24 H 0.321 0.679 25 N 0.030 4.970 26 N -0.095 5.095 27 C -0.211 4.211 28 C 0.036 3.964 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.228 0.772 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.185 -12.091 10.296 16.705 hybrid contribution -0.318 1.488 -0.539 1.614 sum 4.868 -10.603 9.756 15.208 Atomic orbital electron populations 1.22423 0.78043 1.04831 1.02954 1.47697 1.08011 1.05400 1.70613 1.21831 0.97423 0.84123 0.96585 1.22781 0.87585 0.95117 0.91921 0.93520 1.23450 0.98877 0.96403 0.97420 1.23049 0.90309 0.94037 0.96794 1.46580 1.01689 1.39732 1.48936 1.18733 0.80056 0.95027 1.39659 0.90337 1.25578 0.95154 1.00937 1.01052 1.69867 1.07598 1.32091 1.51406 0.85878 0.76053 0.81793 0.78559 1.22095 1.24570 1.17438 1.17918 0.86476 0.83343 0.76613 1.90775 1.14247 1.87541 1.51634 1.20654 1.00943 0.96396 1.02451 1.23663 0.86130 0.91681 0.93488 1.66843 1.31321 1.00729 1.21250 1.19730 0.92651 0.89196 0.94450 1.47476 1.29198 1.10900 1.31572 0.67881 1.81648 0.99014 1.16536 0.99807 1.74875 1.14986 1.00202 1.19417 1.20455 1.01732 0.97195 1.01686 1.21016 0.95252 0.86884 0.93259 0.89059 0.89690 0.91929 0.89170 0.88546 0.88879 0.88801 0.94688 0.93502 0.93292 0.77229 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.60 8.15 127.77 1.04 2.65 16 2 N -0.59 -16.73 2.89 -850.34 -2.46 -19.19 16 3 C 0.12 3.63 5.22 86.38 0.45 4.08 16 4 C 0.13 4.52 4.48 45.09 0.20 4.73 16 5 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 6 C -0.12 -3.64 7.86 31.25 0.25 -3.39 16 7 C 0.08 3.14 7.48 86.48 0.65 3.79 16 8 N -0.64 -27.54 3.22 -694.09 -2.23 -29.77 16 9 C -0.21 -10.50 9.37 84.03 0.79 -9.71 16 10 H 0.08 4.18 5.86 -2.91 -0.02 4.16 16 11 C -0.03 -1.80 5.50 84.86 0.47 -1.34 16 12 N -0.96 -57.03 13.97 21.65 0.30 -56.73 16 13 Si 0.95 44.62 24.73 68.60 1.70 46.32 16 14 H -0.29 -13.87 7.05 99.48 0.70 -13.17 16 15 H -0.32 -15.42 7.11 99.48 0.71 -14.72 16 16 H -0.25 -10.75 6.71 99.48 0.67 -10.08 16 17 C 0.57 16.32 7.19 86.75 0.62 16.94 16 18 O -0.56 -19.02 16.70 -3.94 -0.07 -19.08 16 19 C -0.20 -4.82 4.90 -20.03 -0.10 -4.91 16 20 C 0.22 4.54 8.92 85.24 0.76 5.30 16 21 N -0.49 -10.59 10.37 -191.98 -1.99 -12.58 16 22 C 0.28 6.57 8.49 134.01 1.14 7.71 16 23 N -0.46 -8.66 7.52 -55.37 -0.42 -9.07 16 24 H 0.47 5.06 8.96 -213.26 -1.91 3.15 16 25 N 0.01 0.30 13.82 37.02 0.51 0.81 16 26 N -0.21 -5.76 12.40 -52.14 -0.65 -6.41 16 27 C -0.08 -2.20 7.27 39.63 0.29 -1.91 16 28 C 0.07 1.69 9.91 22.96 0.23 1.92 16 29 H 0.09 1.71 7.13 -2.39 -0.02 1.69 16 30 H 0.08 3.03 4.94 -2.39 -0.01 3.02 16 31 H 0.06 1.68 6.19 -2.39 -0.01 1.66 16 32 H 0.09 2.67 8.02 -2.38 -0.02 2.65 16 33 H 0.10 2.53 7.59 -2.38 -0.02 2.52 16 34 H 0.09 2.56 8.10 -2.39 -0.02 2.54 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.04 1.42 3.62 -2.39 -0.01 1.41 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.21 2.95 6.30 -2.91 -0.02 2.93 16 40 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -69.08 328.73 0.65 -68.44 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -0.83 Total: 11.41 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.78 Total: 25.85 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -6.93 Total: -132.92 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.07 Total: -19.08 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.70 Total: 46.32 kcal Total: -69.08 0.65 -68.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.164 kcal (2) G-P(sol) polarization free energy of solvation -69.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds