Wall clock time and date at job start Tue Mar 31 2020 04:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99965 * 2 1 4 4 C 1.52996 * 109.47205 * 84.70166 * 3 2 1 5 5 H 1.08995 * 112.96740 * 295.07144 * 4 3 2 6 6 C 1.53947 * 113.76980 * 66.74947 * 4 3 2 7 7 C 1.53943 * 86.28918 * 137.90780 * 6 4 3 8 8 N 1.47580 * 113.76776 * 163.39238 * 4 3 2 9 9 C 1.36936 * 134.49589 * 41.06777 * 8 4 3 10 10 H 1.08010 * 119.99581 * 4.78160 * 9 8 4 11 11 C 1.38809 * 120.00458 * 184.77713 * 9 8 4 12 12 N 1.31616 * 119.99540 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00113 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47373 * 60.00335 * 13 11 9 15 15 H 1.48506 * 109.47248 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47197 * 300.00272 * 13 11 9 17 17 C 1.34778 * 119.99694 * 179.97438 * 2 1 3 18 18 O 1.21569 * 119.99577 * 185.38248 * 17 2 1 19 19 C 1.47721 * 120.00096 * 5.38855 * 17 2 1 20 20 C 1.40108 * 120.35346 * 20.76137 * 19 17 2 21 21 N 1.31271 * 121.14884 * 179.69640 * 20 19 17 22 22 C 1.32713 * 121.79728 * 0.59251 * 21 20 19 23 23 N 1.37118 * 133.40376 * 179.69795 * 22 21 20 24 24 H 0.97001 * 126.59237 * 359.97438 * 23 22 21 25 25 N 1.40187 * 106.82091 * 180.02562 * 23 22 21 26 26 N 1.28671 * 109.50961 * 0.02562 * 25 23 22 27 27 C 1.35332 * 109.99969 * 359.97438 * 26 25 23 28 28 C 1.39431 * 120.34661 * 201.04015 * 19 17 2 29 29 H 1.08995 * 109.46894 * 84.38605 * 1 2 3 30 30 H 1.08999 * 109.47147 * 324.38587 * 1 2 3 31 31 H 1.09004 * 109.47012 * 204.38433 * 1 2 3 32 32 H 1.08999 * 109.46575 * 204.70216 * 3 2 1 33 33 H 1.08998 * 109.47145 * 324.69447 * 3 2 1 34 34 H 1.08996 * 113.74151 * 252.25256 * 6 4 3 35 35 H 1.08997 * 113.74053 * 23.45826 * 6 4 3 36 36 H 1.09003 * 113.77410 * 90.69402 * 7 6 4 37 37 H 1.08998 * 113.77178 * 221.98034 * 7 6 4 38 38 H 0.97008 * 119.99737 * 180.02562 * 12 11 9 39 39 H 1.08002 * 119.42490 * 359.97438 * 20 19 17 40 40 H 1.07995 * 120.95650 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3372 1.7770 1.4363 5 1 1.3804 2.0302 1.8928 6 6 3.2331 0.8932 2.3229 7 6 3.8184 2.2080 2.8693 8 7 3.3690 2.8193 1.6007 9 6 3.7544 3.9119 0.8707 10 1 3.1995 4.1947 -0.0118 11 6 4.8579 4.6559 1.2648 12 7 5.5342 4.3110 2.3399 13 14 5.3839 6.1459 0.2686 14 1 4.2772 7.1355 0.2360 15 1 6.5814 6.7622 0.8943 16 1 5.7118 5.7242 -1.1171 17 6 2.1389 -1.1673 0.0005 18 8 3.3505 -1.1695 0.0993 19 6 1.4051 -2.4438 -0.1190 20 6 0.1114 -2.4691 -0.6564 21 7 -0.5525 -3.5953 -0.7753 22 6 -0.0385 -4.7547 -0.3843 23 7 -0.5076 -6.0431 -0.3901 24 1 -1.3728 -6.3420 -0.7111 25 7 0.5029 -6.8453 0.1583 26 7 1.5103 -6.1103 0.4756 27 6 1.2531 -4.8166 0.1726 28 6 1.9905 -3.6354 0.3070 29 1 -0.3633 0.1005 -1.0227 30 1 -0.3633 0.8354 0.5984 31 1 -0.3633 -0.9360 0.4243 32 1 3.1877 1.1165 -0.4295 33 1 1.6529 2.0027 -0.5939 34 1 2.6825 0.3158 3.0657 35 1 3.9487 0.2918 1.7623 36 1 3.2974 2.5895 3.7475 37 1 4.9013 2.1894 2.9919 38 1 6.3052 4.8312 2.6156 39 1 -0.3458 -1.5466 -0.9825 40 1 2.9842 -3.6461 0.7297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085642640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:27 Heat of formation + Delta-G solvation = 183.542636 kcal Electronic energy + Delta-G solvation = -25834.566632 eV Core-core repulsion = 22076.243893 eV Total energy + Delta-G solvation = -3758.322739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.78203 -40.47544 -38.62457 -37.56005 -35.58760 -34.39366 -32.21289 -32.06874 -31.33436 -28.58736 -27.79221 -27.01267 -25.26018 -24.34492 -23.23922 -23.05027 -22.33288 -20.09879 -19.11850 -18.94947 -18.75426 -17.16440 -16.75264 -16.59703 -16.33560 -15.79716 -15.46515 -14.74884 -14.61125 -14.09366 -13.84169 -13.74453 -13.66628 -13.27899 -13.13935 -12.92713 -12.51807 -12.29472 -12.26215 -11.94221 -11.68737 -11.38757 -11.01318 -10.85634 -10.64788 -10.49640 -10.30718 -9.83651 -9.75731 -9.71775 -9.66861 -9.54070 -9.39059 -8.73089 -8.46243 -6.82060 -5.70781 -3.04669 -0.21047 0.27818 1.58241 1.65187 2.58132 2.82637 3.31201 3.41615 3.44769 3.46991 3.47448 3.78920 3.86979 4.17442 4.23672 4.47124 4.51753 4.80509 4.95918 5.10051 5.22325 5.29080 5.36974 5.46933 5.48500 5.59854 5.71586 5.87551 5.94432 6.10677 6.22636 6.38685 6.51276 6.65159 6.75889 6.84442 7.03617 7.31666 7.34438 7.36227 7.56784 7.68090 8.04558 8.14979 9.08182 9.75857 10.66279 11.45185 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.032223 B = 0.002750 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.724209 B =10178.812314 C =10525.253914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.601 5.601 3 C 0.117 3.883 4 C 0.128 3.872 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.154 3.846 8 N -0.600 5.600 9 C -0.225 4.225 10 H 0.077 0.923 11 C -0.006 4.006 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.563 3.437 18 O -0.513 6.513 19 C -0.200 4.200 20 C 0.187 3.813 21 N -0.492 5.492 22 C 0.291 3.709 23 N -0.485 5.485 24 H 0.453 0.547 25 N 0.015 4.985 26 N -0.190 5.190 27 C -0.075 4.075 28 C 0.082 3.918 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.203 0.797 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.736 -17.078 -5.729 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.334 5.334 3 C -0.006 4.006 4 C 0.020 3.980 5 H 0.058 0.942 6 C -0.195 4.195 7 C 0.029 3.971 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.349 3.651 18 O -0.388 6.388 19 C -0.209 4.209 20 C 0.015 3.985 21 N -0.206 5.206 22 C 0.046 3.954 23 N -0.210 5.210 24 H 0.301 0.699 25 N 0.032 4.968 26 N -0.071 5.071 27 C -0.200 4.200 28 C 0.051 3.949 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.219 0.781 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.228 -18.293 -5.676 24.469 hybrid contribution -0.102 1.688 -0.554 1.779 sum -15.330 -16.605 -6.230 23.443 Atomic orbital electron populations 1.22483 0.80570 1.03920 1.01743 1.47664 1.06492 1.06413 1.72850 1.21933 0.97727 0.81736 0.99165 1.22513 0.93256 0.89398 0.92866 0.94161 1.23820 0.99477 0.97507 0.98720 1.22311 1.00191 0.86571 0.87982 1.45941 1.35986 1.28348 1.22339 1.18915 1.08534 1.02170 1.05592 0.90519 1.24777 0.97865 0.99629 0.98023 1.69819 1.20753 1.40778 1.25135 0.86240 0.77850 0.82502 0.79370 1.21301 1.21608 1.21071 1.17694 0.87042 0.82646 0.77672 1.90854 1.13109 1.86469 1.48392 1.20852 0.97199 0.95176 1.07696 1.24420 0.89490 0.95498 0.89080 1.66855 1.37071 0.95718 1.20963 1.19674 0.91511 0.87739 0.96461 1.47528 1.18482 1.03117 1.51901 0.69865 1.81742 0.91127 1.14453 1.09448 1.74907 1.17643 1.01265 1.13297 1.20395 0.96066 0.93465 1.10108 1.21112 0.98940 0.86921 0.87916 0.91480 0.90004 0.90115 0.88566 0.90985 0.94106 0.89250 0.96147 0.90512 0.93645 0.78081 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 8.69 59.85 0.52 0.94 16 2 N -0.60 -7.47 2.81 -182.74 -0.51 -7.99 16 3 C 0.12 1.92 5.39 -4.04 -0.02 1.90 16 4 C 0.13 2.50 4.56 -66.87 -0.31 2.19 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.16 -3.15 7.23 -25.79 -0.19 -3.33 16 7 C 0.15 3.75 7.64 -2.85 -0.02 3.73 16 8 N -0.60 -15.15 3.58 -169.72 -0.61 -15.75 16 9 C -0.22 -6.16 10.51 -15.06 -0.16 -6.32 16 10 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 11 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -27.46 11.32 55.49 0.63 -26.83 16 13 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.56 7.65 7.21 -12.38 -0.09 7.56 16 18 O -0.51 -9.07 14.25 5.31 0.08 -8.99 16 19 C -0.20 -2.13 5.59 -104.88 -0.59 -2.72 16 20 C 0.19 1.57 8.74 -17.09 -0.15 1.42 16 21 N -0.49 -4.56 10.37 -12.03 -0.12 -4.68 16 22 C 0.29 2.90 8.49 -155.93 -1.32 1.58 16 23 N -0.48 -3.92 7.52 31.15 0.23 -3.68 16 24 H 0.45 1.98 8.96 -182.53 -1.64 0.35 16 25 N 0.02 0.16 13.82 60.35 0.83 0.99 16 26 N -0.19 -2.25 12.40 32.17 0.40 -1.85 16 27 C -0.07 -0.84 7.27 -84.74 -0.62 -1.46 16 28 C 0.08 0.90 9.75 -38.51 -0.38 0.52 16 29 H 0.07 0.34 7.20 -51.93 -0.37 -0.04 16 30 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 31 H 0.08 0.50 4.93 -51.93 -0.26 0.24 16 32 H 0.10 1.89 7.34 -51.93 -0.38 1.51 16 33 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.93 6.41 -51.93 -0.33 1.59 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 2.08 6.97 -51.93 -0.36 1.72 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.20 1.14 4.05 -52.49 -0.21 0.92 16 40 H 0.17 1.77 7.85 -52.49 -0.41 1.36 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -34.54 334.04 -8.10 -42.64 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.62 Total: -1.66 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -3.41 Total: 5.74 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.85 Total: -59.80 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.54 -8.10 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.185 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds