Wall clock time and date at job start Tue Mar 31 2020 04:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99965 * 2 1 4 4 C 1.52996 * 109.47205 * 84.70166 * 3 2 1 5 5 H 1.08995 * 112.96740 * 295.07144 * 4 3 2 6 6 C 1.53947 * 113.76980 * 66.74947 * 4 3 2 7 7 C 1.53943 * 86.28918 * 137.90780 * 6 4 3 8 8 N 1.47580 * 113.76776 * 163.39238 * 4 3 2 9 9 C 1.36936 * 134.49589 * 41.06777 * 8 4 3 10 10 H 1.08010 * 119.99581 * 4.78160 * 9 8 4 11 11 C 1.38809 * 120.00458 * 184.77713 * 9 8 4 12 12 N 1.31616 * 119.99540 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00113 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47373 * 60.00335 * 13 11 9 15 15 H 1.48506 * 109.47248 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47197 * 300.00272 * 13 11 9 17 17 C 1.34778 * 119.99694 * 179.97438 * 2 1 3 18 18 O 1.21569 * 119.99577 * 185.38248 * 17 2 1 19 19 C 1.47721 * 120.00096 * 5.38855 * 17 2 1 20 20 C 1.40108 * 120.35346 * 20.76137 * 19 17 2 21 21 N 1.31271 * 121.14884 * 179.69640 * 20 19 17 22 22 C 1.32713 * 121.79728 * 0.59251 * 21 20 19 23 23 N 1.37118 * 133.40376 * 179.69795 * 22 21 20 24 24 H 0.97001 * 126.59237 * 359.97438 * 23 22 21 25 25 N 1.40187 * 106.82091 * 180.02562 * 23 22 21 26 26 N 1.28671 * 109.50961 * 0.02562 * 25 23 22 27 27 C 1.35332 * 109.99969 * 359.97438 * 26 25 23 28 28 C 1.39431 * 120.34661 * 201.04015 * 19 17 2 29 29 H 1.08995 * 109.46894 * 84.38605 * 1 2 3 30 30 H 1.08999 * 109.47147 * 324.38587 * 1 2 3 31 31 H 1.09004 * 109.47012 * 204.38433 * 1 2 3 32 32 H 1.08999 * 109.46575 * 204.70216 * 3 2 1 33 33 H 1.08998 * 109.47145 * 324.69447 * 3 2 1 34 34 H 1.08996 * 113.74151 * 252.25256 * 6 4 3 35 35 H 1.08997 * 113.74053 * 23.45826 * 6 4 3 36 36 H 1.09003 * 113.77410 * 90.69402 * 7 6 4 37 37 H 1.08998 * 113.77178 * 221.98034 * 7 6 4 38 38 H 0.97008 * 119.99737 * 180.02562 * 12 11 9 39 39 H 1.08002 * 119.42490 * 359.97438 * 20 19 17 40 40 H 1.07995 * 120.95650 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3372 1.7770 1.4363 5 1 1.3804 2.0302 1.8928 6 6 3.2331 0.8932 2.3229 7 6 3.8184 2.2080 2.8693 8 7 3.3690 2.8193 1.6007 9 6 3.7544 3.9119 0.8707 10 1 3.1995 4.1947 -0.0118 11 6 4.8579 4.6559 1.2648 12 7 5.5342 4.3110 2.3399 13 14 5.3839 6.1459 0.2686 14 1 4.2772 7.1355 0.2360 15 1 6.5814 6.7622 0.8943 16 1 5.7118 5.7242 -1.1171 17 6 2.1389 -1.1673 0.0005 18 8 3.3505 -1.1695 0.0993 19 6 1.4051 -2.4438 -0.1190 20 6 0.1114 -2.4691 -0.6564 21 7 -0.5525 -3.5953 -0.7753 22 6 -0.0385 -4.7547 -0.3843 23 7 -0.5076 -6.0431 -0.3901 24 1 -1.3728 -6.3420 -0.7111 25 7 0.5029 -6.8453 0.1583 26 7 1.5103 -6.1103 0.4756 27 6 1.2531 -4.8166 0.1726 28 6 1.9905 -3.6354 0.3070 29 1 -0.3633 0.1005 -1.0227 30 1 -0.3633 0.8354 0.5984 31 1 -0.3633 -0.9360 0.4243 32 1 3.1877 1.1165 -0.4295 33 1 1.6529 2.0027 -0.5939 34 1 2.6825 0.3158 3.0657 35 1 3.9487 0.2918 1.7623 36 1 3.2974 2.5895 3.7475 37 1 4.9013 2.1894 2.9919 38 1 6.3052 4.8312 2.6156 39 1 -0.3458 -1.5466 -0.9825 40 1 2.9842 -3.6461 0.7297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085642640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:27 Heat of formation + Delta-G solvation = 158.247041 kcal Electronic energy + Delta-G solvation = -25835.663531 eV Core-core repulsion = 22076.243893 eV Total energy + Delta-G solvation = -3759.419638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.56069 -41.48081 -39.78309 -38.97881 -36.67845 -35.18312 -34.19787 -32.88871 -32.28385 -29.81675 -29.70465 -27.91805 -26.14531 -25.36204 -25.11191 -23.88502 -23.70611 -21.20809 -20.64893 -19.85161 -19.65518 -18.61417 -17.99614 -17.44916 -17.21931 -17.02518 -16.89396 -16.18991 -15.79578 -15.58258 -15.24748 -14.83271 -14.59470 -14.22051 -14.09661 -13.95537 -13.74290 -13.67762 -13.31705 -13.21094 -12.86933 -12.73296 -12.53560 -12.45861 -12.39693 -12.26246 -11.75478 -11.55464 -11.26493 -11.24706 -10.77566 -10.68286 -10.48948 -10.21731 -9.62198 -8.82959 -7.82770 -5.17135 -0.98075 -0.53521 0.86108 0.90317 1.47555 1.51768 1.57151 1.63544 1.83282 2.45447 2.52088 2.69869 3.02951 3.09847 3.32957 3.39478 3.48699 3.50257 3.71505 3.98962 4.12402 4.27665 4.28322 4.38043 4.50165 4.54345 4.65420 4.68232 4.83941 4.89936 4.93437 4.99618 5.09591 5.16647 5.31174 5.50092 5.59940 5.67418 5.83294 6.00984 6.29840 6.38208 6.57447 6.96149 7.11435 7.68259 8.64763 9.33806 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.032223 B = 0.002750 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.724209 B =10178.812314 C =10525.253914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.596 5.596 3 C 0.132 3.868 4 C 0.136 3.864 5 H 0.066 0.934 6 C -0.134 4.134 7 C 0.147 3.853 8 N -0.629 5.629 9 C -0.224 4.224 10 H 0.091 0.909 11 C -0.074 4.074 12 N -0.958 5.958 13 Si 0.977 3.023 14 H -0.274 1.274 15 H -0.300 1.300 16 H -0.276 1.276 17 C 0.562 3.438 18 O -0.564 6.564 19 C -0.199 4.199 20 C 0.204 3.796 21 N -0.486 5.486 22 C 0.290 3.710 23 N -0.464 5.464 24 H 0.470 0.530 25 N 0.011 4.989 26 N -0.215 5.215 27 C -0.090 4.090 28 C 0.076 3.924 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.018 0.982 37 H 0.037 0.963 38 H 0.245 0.755 39 H 0.237 0.763 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.334 -17.352 -7.399 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.327 5.327 3 C 0.008 3.992 4 C 0.029 3.971 5 H 0.083 0.917 6 C -0.172 4.172 7 C 0.021 3.979 8 N -0.355 5.355 9 C -0.352 4.352 10 H 0.109 0.891 11 C -0.267 4.267 12 N -0.607 5.607 13 Si 0.805 3.195 14 H -0.200 1.200 15 H -0.227 1.227 16 H -0.202 1.202 17 C 0.351 3.649 18 O -0.443 6.443 19 C -0.208 4.208 20 C 0.032 3.968 21 N -0.201 5.201 22 C 0.044 3.956 23 N -0.192 5.192 24 H 0.322 0.678 25 N 0.028 4.972 26 N -0.096 5.096 27 C -0.215 4.215 28 C 0.046 3.954 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.252 0.748 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.932 -18.622 -7.375 27.561 hybrid contribution 0.916 1.687 -0.025 1.920 sum -18.016 -16.935 -7.399 25.810 Atomic orbital electron populations 1.22909 0.76948 1.05367 1.04553 1.47626 1.08508 1.04519 1.72064 1.21463 0.97048 0.83928 0.96808 1.22699 0.92697 0.86829 0.94864 0.91700 1.23534 0.99094 0.95733 0.98875 1.22242 0.98058 0.89338 0.88262 1.46290 1.37811 1.28875 1.22572 1.19406 1.08056 1.02110 1.05674 0.89111 1.25661 0.98575 1.02997 0.99452 1.70042 1.21336 1.42122 1.27232 0.85170 0.77132 0.79225 0.77929 1.19971 1.22709 1.20219 1.18078 0.86550 0.83684 0.76636 1.90842 1.15507 1.87223 1.50743 1.20581 0.98035 0.93362 1.08829 1.24906 0.88170 0.96341 0.87409 1.67021 1.36690 0.95479 1.20863 1.19820 0.91125 0.88461 0.96173 1.47510 1.18697 1.02337 1.50611 0.67837 1.81684 0.91363 1.14656 1.09526 1.74900 1.18498 1.01794 1.14431 1.20486 0.96858 0.93285 1.10919 1.21110 0.98850 0.87380 0.88104 0.87757 0.89110 0.88317 0.92354 0.88799 0.91247 0.91083 0.96378 0.94468 0.94617 0.74757 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 8.69 127.77 1.11 1.54 16 2 N -0.60 -13.10 2.81 -850.33 -2.39 -15.49 16 3 C 0.13 4.08 5.39 86.38 0.47 4.54 16 4 C 0.14 5.08 4.56 45.09 0.21 5.29 16 5 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.13 -5.36 7.23 31.25 0.23 -5.14 16 7 C 0.15 7.32 7.64 86.43 0.66 7.98 16 8 N -0.63 -31.90 3.58 -690.88 -2.48 -34.37 16 9 C -0.22 -12.32 10.51 84.03 0.88 -11.43 16 10 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 11 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 12 N -0.96 -59.52 11.32 21.65 0.25 -59.28 16 13 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 C 0.56 14.51 7.21 86.75 0.63 15.13 16 18 O -0.56 -20.32 14.25 -3.93 -0.06 -20.38 16 19 C -0.20 -3.84 5.59 -20.03 -0.11 -3.95 16 20 C 0.20 2.64 8.74 85.23 0.75 3.38 16 21 N -0.49 -7.25 10.37 -191.98 -1.99 -9.24 16 22 C 0.29 5.08 8.49 134.01 1.14 6.21 16 23 N -0.46 -6.44 7.52 -55.37 -0.42 -6.86 16 24 H 0.47 2.82 8.96 -213.26 -1.91 0.91 16 25 N 0.01 0.21 13.82 37.02 0.51 0.72 16 26 N -0.22 -4.99 12.40 -52.14 -0.65 -5.64 16 27 C -0.09 -1.92 7.27 39.63 0.29 -1.63 16 28 C 0.08 1.63 9.75 22.96 0.22 1.86 16 29 H 0.10 0.37 7.20 -2.39 -0.02 0.35 16 30 H 0.09 0.86 8.11 -2.39 -0.02 0.84 16 31 H 0.10 0.69 4.93 -2.38 -0.01 0.67 16 32 H 0.06 2.29 7.34 -2.39 -0.02 2.28 16 33 H 0.09 2.52 8.11 -2.39 -0.02 2.50 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.07 3.15 6.41 -2.39 -0.02 3.13 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 2.13 6.97 -2.39 -0.02 2.11 16 38 H 0.24 14.89 8.31 -92.70 -0.77 14.12 16 39 H 0.24 1.32 4.05 -2.91 -0.01 1.31 16 40 H 0.16 3.54 7.85 -2.91 -0.02 3.51 16 Total: -1.00 -78.82 334.04 0.94 -77.88 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -0.79 Total: 4.70 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.93 Total: 19.97 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -7.16 Total: -130.15 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -78.82 0.94 -77.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.130 kcal (2) G-P(sol) polarization free energy of solvation -78.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds