Wall clock time and date at job start Tue Mar 31 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30444 * 125.98794 * 2 1 4 4 N 1.39940 * 108.89995 * 180.26723 * 3 2 1 5 5 C 1.46501 * 125.75320 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46929 * 304.96618 * 5 4 3 7 7 F 1.39903 * 109.46901 * 175.00189 * 6 5 4 8 8 F 1.39901 * 109.47264 * 295.00337 * 6 5 4 9 9 C 1.34257 * 108.48782 * 359.97438 * 4 3 2 10 10 C 1.38037 * 107.42081 * 0.02562 * 9 4 3 11 11 C 1.47428 * 126.41638 * 179.97438 * 10 9 4 12 12 O 1.21602 * 120.00240 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99961 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00012 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47015 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46986 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47061 * 179.97438 * 16 15 14 18 18 C 1.36930 * 119.99772 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99814 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99700 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99880 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47054 * 60.00269 * 22 20 18 24 24 H 1.48500 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47080 * 300.00167 * 22 20 18 26 26 H 1.08997 * 109.47277 * 269.68987 * 1 2 3 27 27 H 1.08997 * 109.47543 * 29.69329 * 1 2 3 28 28 H 1.09009 * 109.46976 * 149.68989 * 1 2 3 29 29 H 1.09000 * 109.47532 * 64.96798 * 5 4 3 30 30 H 1.09005 * 109.46809 * 184.97196 * 5 4 3 31 31 H 1.09000 * 109.47129 * 55.00656 * 6 5 4 32 32 H 1.08002 * 126.28642 * 180.02562 * 9 4 3 33 33 H 0.97000 * 120.00135 * 359.97438 * 13 11 10 34 34 H 1.09000 * 109.47052 * 299.99090 * 14 13 11 35 35 H 1.09000 * 109.47565 * 59.99816 * 14 13 11 36 36 H 1.08993 * 109.47268 * 299.99671 * 15 14 13 37 37 H 1.08996 * 109.47383 * 60.00233 * 15 14 13 38 38 H 1.09007 * 109.47165 * 300.00024 * 16 15 14 39 39 H 1.09000 * 109.47456 * 60.00088 * 16 15 14 40 40 H 0.96992 * 119.99772 * 0.02562 * 17 16 15 41 41 H 0.97004 * 119.99501 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0062 5 6 4.7786 1.5292 -0.0076 6 6 4.6814 2.4998 -1.1864 7 9 5.7354 3.4176 -1.1228 8 9 4.7572 1.7850 -2.3866 9 6 3.6439 -0.6979 -0.0094 10 6 2.3373 -1.1432 -0.0059 11 6 1.8916 -2.5485 -0.0082 12 8 0.7040 -2.8098 -0.0051 13 7 2.8005 -3.5437 -0.0137 14 6 2.3576 -4.9401 -0.0165 15 6 3.5785 -5.8623 -0.0233 16 6 3.1160 -7.3207 -0.0256 17 7 4.2850 -8.2038 -0.0327 18 6 4.1165 -9.5627 -0.0353 19 1 3.1219 -9.9836 -0.0326 20 6 5.2242 -10.3994 -0.0426 21 7 6.4363 -9.8864 -0.0465 22 14 4.9943 -12.2532 -0.0470 23 1 4.2334 -12.6548 -1.2573 24 1 6.3228 -12.9167 -0.0554 25 1 4.2440 -12.6618 1.1677 26 1 -0.3634 -0.0056 1.0276 27 1 -0.3634 0.8927 -0.5090 28 1 -0.3633 -0.8873 -0.5187 29 1 4.8090 2.0923 0.9252 30 1 5.6863 0.9329 -0.1019 31 1 3.7320 3.0332 -1.1404 32 1 4.5298 -1.3156 -0.0139 33 1 3.7478 -3.3353 -0.0165 34 1 1.7607 -5.1337 0.8747 35 1 1.7554 -5.1286 -0.9053 36 1 4.1752 -5.6686 -0.9146 37 1 4.1810 -5.6741 0.8653 38 1 2.5195 -7.5142 0.8661 39 1 2.5132 -7.5094 -0.9139 40 1 5.1782 -7.8258 -0.0348 41 1 7.2103 -10.4711 -0.0520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160535134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:58 Heat of formation + Delta-G solvation = -86.405955 kcal Electronic energy + Delta-G solvation = -25096.986589 eV Core-core repulsion = 20876.268815 eV Total energy + Delta-G solvation = -4220.717775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.145 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -50.11147 -48.13355 -42.53968 -40.22396 -37.46179 -35.92867 -35.46240 -33.81411 -32.28733 -31.40680 -30.57370 -28.42986 -26.89719 -24.94346 -24.21415 -23.26766 -22.56113 -21.35601 -20.73093 -19.30475 -18.97798 -18.64961 -18.31295 -17.55611 -17.05913 -16.81918 -16.66762 -16.31248 -16.12062 -15.43947 -15.26925 -15.20353 -15.07334 -14.95268 -14.60709 -14.49411 -14.28478 -14.01434 -13.83519 -13.75409 -13.26757 -13.14807 -12.99489 -12.77367 -12.57191 -12.40299 -12.37167 -12.07958 -12.00094 -11.87026 -11.77786 -10.91945 -10.89697 -10.47036 -10.15454 -9.70621 -8.99975 -7.95371 -5.24011 0.39450 1.02088 1.09437 1.48885 1.51750 1.57814 2.24744 2.40607 2.48757 2.58067 3.15939 3.30504 3.38508 3.44343 3.59922 3.74692 3.81332 3.97791 4.14429 4.15520 4.29535 4.30969 4.34720 4.39743 4.53844 4.76540 4.78382 4.78914 4.91015 4.95831 4.96817 5.32378 5.36133 5.44871 5.49922 5.50629 5.67398 6.27691 6.39502 6.66305 7.31855 7.34236 8.09513 8.33316 9.27954 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.002054 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.169763 B =13628.081361 C =14920.544914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.126 3.874 3 N -0.321 5.321 4 N -0.363 5.363 5 C 0.084 3.916 6 C 0.253 3.747 7 F -0.199 7.199 8 F -0.215 7.215 9 C 0.133 3.867 10 C -0.311 4.311 11 C 0.591 3.409 12 O -0.581 6.581 13 N -0.714 5.714 14 C 0.136 3.864 15 C -0.117 4.117 16 C 0.151 3.849 17 N -0.747 5.747 18 C -0.249 4.249 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.974 3.026 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.278 1.278 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.128 0.872 32 H 0.228 0.772 33 H 0.412 0.588 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.376 0.624 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 29.658 0.868 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 N -0.142 5.142 4 N -0.140 5.140 5 C -0.037 4.037 6 C 0.199 3.801 7 F -0.180 7.180 8 F -0.197 7.197 9 C -0.018 4.018 10 C -0.326 4.326 11 C 0.380 3.620 12 O -0.462 6.462 13 N -0.366 5.366 14 C 0.012 3.988 15 C -0.156 4.156 16 C 0.024 3.976 17 N -0.390 5.390 18 C -0.381 4.381 19 H 0.092 0.908 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.204 1.204 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.173 0.827 31 H 0.146 0.854 32 H 0.244 0.756 33 H 0.249 0.751 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.208 0.792 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.061 30.698 0.845 30.977 hybrid contribution 0.887 -1.779 -0.180 1.996 sum -3.174 28.919 0.665 29.100 Atomic orbital electron populations 1.20332 0.85226 1.03944 1.03924 1.22725 0.97946 0.89028 0.94489 1.77090 0.86578 1.22688 1.27858 1.48219 1.05506 1.05152 1.55119 1.23108 0.86218 0.94115 1.00293 1.22241 0.90733 0.85506 0.81618 1.93025 1.61079 1.67554 1.96380 1.93013 1.97153 1.79633 1.49873 1.23706 0.99417 0.84877 0.93791 1.20235 0.93462 0.93562 1.25320 1.17470 0.85217 0.84270 0.75087 1.90729 1.17959 1.84869 1.52653 1.45688 1.10220 1.05442 1.75258 1.21068 0.96342 0.79469 1.01953 1.21695 0.97397 0.93132 1.03338 1.20694 0.89672 0.89288 0.97957 1.42531 1.04414 1.02480 1.89541 1.19613 0.92874 0.84150 1.41491 0.90771 1.25576 0.95058 1.02538 1.03593 1.69793 0.97457 1.35292 1.59355 0.85207 0.76271 0.80058 0.78203 1.20445 1.21983 1.20388 0.89624 0.89683 0.90140 0.83662 0.82732 0.85432 0.75566 0.75100 0.91912 0.92051 0.90669 0.90553 0.96010 0.96096 0.79186 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 9.91 71.23 0.71 -0.73 16 2 C 0.13 2.62 7.26 43.52 0.32 2.94 16 3 N -0.32 -5.86 12.24 -46.68 -0.57 -6.43 16 4 N -0.36 -4.39 3.63 -346.29 -1.26 -5.65 16 5 C 0.08 0.38 6.68 86.38 0.58 0.96 16 6 C 0.25 2.24 5.42 71.98 0.39 2.63 16 7 F -0.20 -2.12 17.34 44.97 0.78 -1.34 16 8 F -0.22 -3.29 17.32 44.97 0.78 -2.51 16 9 C 0.13 1.59 10.94 84.27 0.92 2.51 16 10 C -0.31 -6.17 6.13 -20.15 -0.12 -6.30 16 11 C 0.59 14.57 7.81 86.66 0.68 15.25 16 12 O -0.58 -18.73 14.92 -4.04 -0.06 -18.79 16 13 N -0.71 -14.67 5.54 -466.37 -2.59 -17.25 16 14 C 0.14 3.42 5.67 86.38 0.49 3.91 16 15 C -0.12 -3.27 5.44 30.60 0.17 -3.10 16 16 C 0.15 5.80 6.26 86.38 0.54 6.34 16 17 N -0.75 -37.36 5.60 -343.42 -1.92 -39.28 16 18 C -0.25 -13.94 9.99 84.04 0.84 -13.10 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16 22 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.82 6.56 -2.38 -0.02 1.81 16 29 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.15 -0.16 8.06 -2.38 -0.02 -0.18 16 31 H 0.13 1.04 8.04 -2.39 -0.02 1.02 16 32 H 0.23 0.58 7.46 -2.91 -0.02 0.56 16 33 H 0.41 5.61 7.40 -92.71 -0.69 4.93 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.38 19.59 7.67 -92.71 -0.71 18.88 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -77.47 362.18 3.12 -74.35 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.32 Total: 19.76 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.97 Total: 7.47 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -6.06 Total: -126.80 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.56 Total: -3.85 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.47 3.12 -74.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160535134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.055 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds