Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20761 * 119.99956 * 2 1 4 4 C 1.50704 * 120.00141 * 179.97438 * 2 1 3 5 5 H 1.08998 * 112.84143 * 26.69722 * 4 2 1 6 6 C 1.53779 * 113.61904 * 255.50034 * 4 2 1 7 7 C 1.53781 * 87.07864 * 219.93542 * 6 4 2 8 8 H 1.09000 * 113.61151 * 270.79698 * 7 6 4 9 9 C 1.50701 * 113.61378 * 139.98448 * 7 6 4 10 10 O 1.21279 * 119.99939 * 224.48485 * 9 7 6 11 11 N 1.34774 * 120.00017 * 44.48010 * 9 7 6 12 12 S 1.65606 * 119.99783 * 180.02562 * 11 9 7 13 13 O 1.42099 * 104.27697 * 308.93317 * 12 11 9 14 14 O 1.42100 * 104.27686 * 181.07003 * 12 11 9 15 15 C 1.81404 * 104.44615 * 65.00273 * 12 11 9 16 16 C 1.50701 * 109.46650 * 179.97438 * 15 12 11 17 17 H 1.08005 * 120.00460 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99704 * 179.72903 * 16 15 12 19 19 N 1.31513 * 120.00236 * 0.26908 * 18 16 15 20 20 Si 1.86801 * 119.99801 * 180.27744 * 18 16 15 21 21 H 1.48494 * 109.47525 * 59.99594 * 20 18 16 22 22 H 1.48503 * 109.46983 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46980 * 299.99204 * 20 18 16 24 24 C 1.53778 * 113.69057 * 157.95875 * 4 2 1 25 25 C 1.53006 * 113.61365 * 25.45356 * 24 4 2 26 26 C 1.53000 * 113.61804 * 254.54538 * 24 4 2 27 27 H 1.08995 * 109.47237 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47217 * 300.00127 * 1 2 3 29 29 H 1.09002 * 109.46646 * 60.00166 * 1 2 3 30 30 H 1.09000 * 113.61524 * 105.38546 * 6 4 2 31 31 H 1.08998 * 113.68745 * 334.49399 * 6 4 2 32 32 H 0.96997 * 119.99908 * 0.02562 * 11 9 7 33 33 H 1.09000 * 109.46931 * 60.00361 * 15 12 11 34 34 H 1.08997 * 109.47296 * 299.99805 * 15 12 11 35 35 H 0.96998 * 120.00151 * 180.02562 * 19 18 16 36 36 H 1.08996 * 109.47016 * 164.51227 * 25 24 4 37 37 H 1.09004 * 109.46718 * 284.50800 * 25 24 4 38 38 H 1.08992 * 109.47171 * 44.50399 * 25 24 4 39 39 H 1.08994 * 109.46762 * 322.50498 * 26 24 4 40 40 H 1.09001 * 109.46933 * 82.50575 * 26 24 4 41 41 H 1.08997 * 109.47129 * 202.50072 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6949 -2.1205 -0.4504 6 6 2.8741 -1.6617 1.3648 7 6 4.1066 -2.1600 0.5919 8 1 4.0464 -3.2096 0.3040 9 6 5.4154 -1.8083 1.2511 10 8 6.3326 -1.3760 0.5856 11 7 5.5666 -1.9739 2.5800 12 16 7.0046 -1.5868 3.3044 13 8 7.9823 -2.2636 2.5264 14 8 6.8054 -1.9100 4.6737 15 6 7.1509 0.2085 3.0890 16 6 8.4357 0.6864 3.7152 17 1 9.0977 -0.0192 4.1951 18 6 8.7684 2.0237 3.6709 19 7 7.9620 2.8830 3.0870 20 14 10.3646 2.6150 4.4403 21 1 11.5114 1.9381 3.7832 22 1 10.4873 4.0838 4.2589 23 1 10.3643 2.2932 5.8900 24 6 3.6999 -1.1878 -0.5279 25 6 4.2980 0.2118 -0.3716 26 6 3.8850 -1.7609 -1.9344 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.3394 -2.4525 1.8908 31 1 3.0747 -0.7950 1.9947 32 1 4.8331 -2.3199 3.1121 33 1 6.3068 0.7022 3.5706 34 1 7.1535 0.4479 2.0256 35 1 8.1962 3.8238 3.0556 36 1 5.3789 0.1617 -0.5026 37 1 3.8712 0.8754 -1.1237 38 1 4.0699 0.5954 0.6228 39 1 3.2750 -2.6574 -2.0446 40 1 3.5780 -1.0195 -2.6721 41 1 4.9340 -2.0139 -2.0884 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -132.355280 kcal Electronic energy + Delta-G solvation = -25888.610698 eV Core-core repulsion = 22089.729385 eV Total energy + Delta-G solvation = -3798.881313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54427 -39.36391 -37.49901 -36.19746 -35.15734 -34.13967 -33.32379 -31.37489 -30.32277 -29.03421 -27.45502 -27.22369 -23.58754 -23.32026 -22.08531 -20.11612 -19.14968 -18.61795 -17.42243 -17.08957 -16.43473 -16.04376 -15.79471 -15.41137 -15.18089 -15.05260 -14.62828 -14.30507 -14.08414 -14.02199 -13.67120 -13.36058 -12.73792 -12.51288 -12.43856 -12.21205 -12.16289 -11.99043 -11.90460 -11.63940 -11.51697 -11.44744 -11.27238 -11.19863 -11.16056 -10.98298 -10.86451 -10.62645 -10.37312 -10.26860 -9.91332 -9.74968 -9.19562 -9.04759 -8.67364 -6.29549 -4.41355 1.05946 1.77918 2.43633 3.19306 3.26500 3.28977 3.33482 3.83581 4.08767 4.12788 4.24809 4.30943 4.44652 4.60645 4.75710 4.87892 5.02136 5.09220 5.15742 5.17713 5.21319 5.27686 5.32306 5.33493 5.40438 5.54237 5.67416 5.75288 5.83468 6.06342 6.08434 6.27252 6.39409 6.61251 6.71932 6.79855 7.04079 7.43618 7.44410 7.76245 7.83867 8.59446 9.25900 10.81941 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.004354 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.192653 B = 6429.181629 C = 7192.975744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.359 3.641 3 O -0.438 6.438 4 C -0.162 4.162 5 H 0.117 0.883 6 C -0.116 4.116 7 C -0.129 4.129 8 H 0.130 0.870 9 C 0.543 3.457 10 O -0.479 6.479 11 N -1.060 6.060 12 S 2.551 3.449 13 O -0.954 6.954 14 O -0.971 6.971 15 C -0.402 4.402 16 C -0.537 4.537 17 H 0.069 0.931 18 C 0.079 3.921 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.042 4.042 25 C -0.133 4.133 26 C -0.138 4.138 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.423 0.577 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.270 0.730 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.014 -9.244 -7.308 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.233 3.767 3 O -0.310 6.310 4 C -0.181 4.181 5 H 0.135 0.865 6 C -0.154 4.154 7 C -0.152 4.152 8 H 0.148 0.852 9 C 0.329 3.671 10 O -0.349 6.349 11 N -0.820 5.820 12 S 2.654 3.346 13 O -0.944 6.944 14 O -0.962 6.962 15 C -0.539 4.539 16 C -0.576 4.576 17 H 0.088 0.912 18 C -0.128 4.128 19 N -0.511 5.511 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.042 4.042 25 C -0.189 4.189 26 C -0.195 4.195 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.257 0.743 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.483 -8.857 -7.471 20.148 hybrid contribution -0.135 0.499 0.479 0.705 sum -16.617 -8.358 -6.992 19.872 Atomic orbital electron populations 1.22292 0.94802 1.04329 1.04604 1.24357 0.91533 0.89948 0.70844 1.90512 1.71122 1.35045 1.34312 1.23346 0.96951 0.98289 0.99476 0.86466 1.22899 0.95028 1.02385 0.95057 1.23026 0.91601 1.02359 0.98225 0.85248 1.20250 0.89846 0.75905 0.81133 1.90879 1.41206 1.40517 1.62344 1.55506 1.36304 1.73019 1.17156 1.07167 0.72422 0.81666 0.73370 1.93525 1.56889 1.73577 1.70405 1.93514 1.84126 1.85372 1.33154 1.27583 1.06322 1.12040 1.07938 1.20239 1.03225 0.94616 1.39568 0.91249 1.24911 0.97569 0.96049 0.94299 1.69950 1.36628 1.03295 1.41187 0.86418 0.82637 0.77765 0.80055 1.19371 1.20659 1.19415 1.21671 0.91936 0.96537 0.94086 1.21919 1.01564 0.92266 1.03176 1.21771 1.02844 1.00182 0.94713 0.90239 0.89160 0.89252 0.89234 0.88526 0.74318 0.89790 0.88317 0.92086 0.90662 0.91665 0.91735 0.92540 0.92255 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 10.33 36.01 0.37 -0.83 16 2 C 0.36 3.42 6.68 -29.03 -0.19 3.23 16 3 O -0.44 -6.11 13.20 6.00 0.08 -6.03 16 4 C -0.16 -1.32 3.50 -90.96 -0.32 -1.64 16 5 H 0.12 0.59 7.94 -51.93 -0.41 0.18 16 6 C -0.12 -0.99 6.25 -25.92 -0.16 -1.15 16 7 C -0.13 -1.42 3.70 -90.96 -0.34 -1.75 16 8 H 0.13 1.06 8.10 -51.93 -0.42 0.64 16 9 C 0.54 8.80 6.28 -10.99 -0.07 8.74 16 10 O -0.48 -9.82 12.71 -11.59 -0.15 -9.96 16 11 N -1.06 -16.97 5.50 31.22 0.17 -16.80 16 12 S 2.55 56.10 5.03 -107.50 -0.54 55.56 16 13 O -0.95 -24.03 17.04 -64.79 -1.10 -25.14 16 14 O -0.97 -22.45 18.08 -57.54 -1.04 -23.49 16 15 C -0.40 -10.18 5.64 36.01 0.20 -9.98 16 16 C -0.54 -15.31 9.13 -34.44 -0.31 -15.62 16 17 H 0.07 1.92 7.71 -52.48 -0.40 1.52 16 18 C 0.08 2.23 5.46 -17.82 -0.10 2.13 16 19 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 20 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.04 -0.47 1.11 -153.70 -0.17 -0.64 16 25 C -0.13 -2.04 6.27 37.16 0.23 -1.80 16 26 C -0.14 -1.35 9.20 37.16 0.34 -1.01 16 27 H 0.08 0.28 7.99 -51.93 -0.41 -0.13 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.98 7.51 -51.93 -0.39 0.59 16 32 H 0.42 4.88 8.32 -34.48 -0.29 4.60 16 33 H 0.08 2.06 8.14 -51.92 -0.42 1.64 16 34 H 0.10 2.62 7.19 -51.93 -0.37 2.25 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.07 1.35 6.18 -51.93 -0.32 1.03 16 37 H 0.06 0.99 7.00 -51.93 -0.36 0.63 16 38 H 0.06 1.07 6.19 -51.93 -0.32 0.75 16 39 H 0.06 0.41 7.94 -51.93 -0.41 0.00 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -37.65 348.47 -7.92 -45.57 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.79 Total: 3.67 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.51 Total: -20.34 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.91 Total: -41.53 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -2.21 Total: -64.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 56.10 SS G_CDS: -0.54 Total: 55.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.65 -7.92 -45.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.789 kcal (2) G-P(sol) polarization free energy of solvation -37.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds