Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.55368 * 2 1 4 4 C 1.52884 * 109.58140 * 240.01295 * 2 1 3 5 5 N 1.47153 * 108.60600 * 187.92748 * 4 2 1 6 6 C 1.34777 * 120.97676 * 230.49640 * 5 4 2 7 7 O 1.21287 * 119.99407 * 179.71193 * 6 5 4 8 8 C 1.50693 * 120.00339 * 359.72063 * 6 5 4 9 9 O 1.45198 * 109.47402 * 179.97438 * 8 6 5 10 10 C 1.34230 * 117.00173 * 179.97438 * 9 8 6 11 11 O 1.20822 * 120.00010 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99763 * 180.02562 * 10 9 8 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46946 * 90.00549 * 18 16 14 20 20 H 1.48504 * 109.46826 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47486 * 329.99998 * 18 16 14 22 22 C 1.47151 * 118.03726 * 50.22328 * 5 4 2 23 23 C 1.53295 * 108.38270 * 309.71506 * 22 5 4 24 24 H 1.09000 * 109.51372 * 292.32444 * 23 22 5 25 25 C 1.53010 * 109.51006 * 172.22780 * 23 22 5 26 26 O 1.42959 * 109.51183 * 120.13095 * 2 1 3 27 27 H 1.08992 * 109.47335 * 299.87567 * 1 2 3 28 28 H 1.09001 * 109.46934 * 59.87148 * 1 2 3 29 29 H 1.08999 * 109.47287 * 179.86726 * 1 2 3 30 30 H 1.08994 * 109.62141 * 68.10022 * 4 2 1 31 31 H 1.09004 * 109.52003 * 307.68291 * 4 2 1 32 32 H 1.09003 * 109.47604 * 59.99369 * 8 6 5 33 33 H 1.09003 * 109.46753 * 299.99288 * 8 6 5 34 34 H 1.09000 * 109.47318 * 299.99486 * 12 10 9 35 35 H 1.09000 * 109.47161 * 60.00117 * 12 10 9 36 36 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.68435 * 69.44014 * 22 5 4 38 38 H 1.09002 * 109.68051 * 189.95796 * 22 5 4 39 39 H 1.08992 * 109.46947 * 60.00033 * 25 23 22 40 40 H 1.09002 * 109.46908 * 180.02562 * 25 23 22 41 41 H 1.08992 * 109.46806 * 299.99961 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0424 -0.7199 -1.2476 5 7 3.5011 -0.8762 -1.1336 6 6 4.3193 -0.5034 -2.1377 7 8 5.5194 -0.6354 -2.0227 8 6 3.7430 0.0776 -3.4031 9 8 4.8198 0.3973 -4.3231 10 6 4.4729 0.9270 -5.5067 11 8 3.3081 1.1168 -5.7656 12 6 5.5364 1.2839 -6.5132 13 16 4.7576 1.9703 -7.9959 14 6 6.1887 2.2903 -8.9728 15 1 7.1698 2.0585 -8.5854 16 6 6.0550 2.8412 -10.2398 17 7 4.8594 3.1251 -10.7113 18 14 7.5723 3.1811 -11.2752 19 1 7.8871 1.9863 -12.0991 20 1 7.3146 4.3419 -12.1648 21 1 8.7212 3.4852 -10.3849 22 6 4.0406 -1.4459 0.1113 23 6 3.4312 -0.6856 1.2947 24 1 3.8037 0.3388 1.3000 25 6 3.8212 -1.3779 2.6023 26 8 2.0075 -0.6764 1.1654 27 1 -0.3633 0.5119 0.8910 28 1 -0.3633 0.5158 -0.8888 29 1 -0.3634 -1.0276 -0.0024 30 1 1.8043 -0.1314 -2.1335 31 1 1.5727 -1.7009 -1.3208 32 1 3.1867 0.9846 -3.1661 33 1 3.0740 -0.6488 -3.8645 34 1 6.2116 2.0229 -6.0818 35 1 6.0992 0.3893 -6.7798 36 1 4.7660 3.5098 -11.5968 37 1 3.7755 -2.5011 0.1772 38 1 5.1252 -1.3383 0.1244 39 1 4.9068 -1.3885 2.6980 40 1 3.3872 -0.8370 3.4432 41 1 3.4468 -2.4015 2.5970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914684322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -161.990238 kcal Electronic energy + Delta-G solvation = -23939.411142 eV Core-core repulsion = 20139.244760 eV Total energy + Delta-G solvation = -3800.166382 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96018 -40.06643 -38.73720 -36.15264 -35.23584 -34.35363 -32.49921 -30.94854 -30.35443 -28.84621 -27.17787 -25.92786 -25.52043 -22.50072 -21.77344 -21.14198 -19.78572 -18.17899 -17.48223 -17.42188 -17.07816 -16.82498 -16.52432 -15.92768 -15.51116 -15.32129 -14.85562 -14.64692 -14.19514 -14.13784 -14.01946 -13.37612 -13.29772 -12.93027 -12.71012 -12.65306 -12.61332 -12.46417 -12.33949 -12.11107 -12.05257 -11.53326 -11.14797 -11.11559 -11.07665 -10.83898 -10.73535 -10.55383 -10.22609 -10.03649 -9.90345 -9.12712 -9.01153 -8.39514 -6.62757 -6.28881 -4.01760 1.99469 2.20232 2.54296 2.78243 3.10476 3.20392 3.24040 3.28529 3.48790 3.99453 4.11685 4.13913 4.37007 4.46599 4.50045 4.62483 4.74623 4.83409 4.86462 4.88652 5.03106 5.07234 5.08349 5.10233 5.16822 5.28946 5.39848 5.40856 5.46747 5.50921 5.62293 5.72285 5.75998 5.89318 6.07476 6.48207 6.70376 6.81420 7.54714 7.73040 8.03292 8.29439 9.16904 10.78625 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.002213 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.099308 B =12646.674677 C =13333.083837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 H 0.065 0.935 4 C 0.072 3.928 5 N -0.618 5.618 6 C 0.522 3.478 7 O -0.511 6.511 8 C 0.049 3.951 9 O -0.337 6.337 10 C 0.482 3.518 11 O -0.488 6.488 12 C -0.127 4.127 13 S -0.058 6.058 14 C -0.536 4.536 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.922 3.078 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.085 3.915 23 C 0.074 3.926 24 H 0.064 0.936 25 C -0.143 4.143 26 O -0.373 6.373 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 -8.603 25.191 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.083 0.917 4 C -0.051 4.051 5 N -0.355 5.355 6 C 0.309 3.691 7 O -0.384 6.384 8 C -0.029 4.029 9 O -0.254 6.254 10 C 0.323 3.677 11 O -0.373 6.373 12 C -0.275 4.275 13 S 0.169 5.831 14 C -0.684 4.684 15 H 0.095 0.905 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.748 3.252 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.038 4.038 23 C 0.016 3.984 24 H 0.082 0.918 25 C -0.200 4.200 26 O -0.293 6.293 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.912 -8.461 24.916 27.477 hybrid contribution 2.138 0.109 -0.590 2.221 sum -5.773 -8.351 24.326 26.360 Atomic orbital electron populations 1.21749 0.91713 1.03483 1.03277 1.22394 0.95885 0.95450 0.84712 0.91667 1.22553 0.79880 1.02686 0.99969 1.48042 1.06871 1.64095 1.16468 1.20189 0.86801 0.78008 0.84125 1.90755 1.14386 1.53043 1.80250 1.22589 0.89758 1.02206 0.88345 1.86610 1.37679 1.74527 1.26562 1.23475 0.90398 0.73422 0.80387 1.90666 1.20329 1.49265 1.77050 1.23317 0.99545 1.05906 0.98734 1.85366 1.11705 1.79859 1.06193 1.22846 0.93256 1.49051 1.03218 0.90495 1.25007 0.97167 0.94595 0.96750 1.70004 1.21917 1.40354 1.18002 0.86110 0.81442 0.78087 0.79550 1.20168 1.20708 1.19550 1.22379 1.01122 0.97843 0.82418 1.22493 0.81424 0.99368 0.95130 0.91759 1.21726 1.01799 1.01351 0.95171 1.87978 1.20774 1.77389 1.43144 0.91205 0.90367 0.91367 0.88413 0.89758 0.88179 0.88050 0.87632 0.87623 0.92058 0.90354 0.87816 0.90561 0.91283 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.57 37.16 0.36 -0.38 16 2 C 0.07 0.51 3.39 -26.79 -0.09 0.42 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.07 0.51 5.81 -3.74 -0.02 0.49 16 5 N -0.62 -5.98 3.03 -172.53 -0.52 -6.50 16 6 C 0.52 6.72 7.79 -10.99 -0.09 6.63 16 7 O -0.51 -8.54 15.97 -14.11 -0.23 -8.76 16 8 C 0.05 0.62 4.32 36.00 0.16 0.78 16 9 O -0.34 -5.70 9.75 -45.90 -0.45 -6.15 16 10 C 0.48 9.21 7.98 36.01 0.29 9.49 16 11 O -0.49 -10.19 15.61 -18.75 -0.29 -10.48 16 12 C -0.13 -2.62 6.27 36.01 0.23 -2.39 16 13 S -0.06 -1.52 20.58 -107.50 -2.21 -3.73 16 14 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 15 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 18 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.08 0.72 5.93 -3.53 -0.02 0.70 16 23 C 0.07 0.55 3.40 -26.57 -0.09 0.46 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 C -0.14 -0.77 9.57 37.16 0.36 -0.42 16 26 O -0.37 -3.08 10.03 -35.23 -0.35 -3.44 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.58 6.05 -51.93 -0.31 0.27 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 1.09 7.64 -51.93 -0.40 0.70 16 33 H 0.10 1.12 8.02 -51.93 -0.42 0.71 16 34 H 0.11 2.04 8.14 -51.92 -0.42 1.61 16 35 H 0.11 2.04 8.14 -51.92 -0.42 1.61 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.98 7.08 -51.93 -0.37 0.61 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -34.91 360.66 -7.75 -42.66 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.11 Total: -3.33 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 1.27 Total: 3.04 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.21 Total: -31.40 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.32 Total: -28.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.91 -7.75 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.330 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds