Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.55368 * 2 1 4 4 C 1.52884 * 109.58140 * 240.01295 * 2 1 3 5 5 N 1.47153 * 108.60600 * 187.92748 * 4 2 1 6 6 C 1.34777 * 120.97676 * 230.49640 * 5 4 2 7 7 O 1.21287 * 119.99407 * 179.71193 * 6 5 4 8 8 C 1.50693 * 120.00339 * 359.72063 * 6 5 4 9 9 O 1.45198 * 109.47402 * 179.97438 * 8 6 5 10 10 C 1.34230 * 117.00173 * 179.97438 * 9 8 6 11 11 O 1.20822 * 120.00010 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99763 * 180.02562 * 10 9 8 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46946 * 90.00549 * 18 16 14 20 20 H 1.48504 * 109.46826 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47486 * 329.99998 * 18 16 14 22 22 C 1.47151 * 118.03726 * 50.22328 * 5 4 2 23 23 C 1.53295 * 108.38270 * 309.71506 * 22 5 4 24 24 H 1.09000 * 109.51372 * 292.32444 * 23 22 5 25 25 C 1.53010 * 109.51006 * 172.22780 * 23 22 5 26 26 O 1.42959 * 109.51183 * 120.13095 * 2 1 3 27 27 H 1.08992 * 109.47335 * 299.87567 * 1 2 3 28 28 H 1.09001 * 109.46934 * 59.87148 * 1 2 3 29 29 H 1.08999 * 109.47287 * 179.86726 * 1 2 3 30 30 H 1.08994 * 109.62141 * 68.10022 * 4 2 1 31 31 H 1.09004 * 109.52003 * 307.68291 * 4 2 1 32 32 H 1.09003 * 109.47604 * 59.99369 * 8 6 5 33 33 H 1.09003 * 109.46753 * 299.99288 * 8 6 5 34 34 H 1.09000 * 109.47318 * 299.99486 * 12 10 9 35 35 H 1.09000 * 109.47161 * 60.00117 * 12 10 9 36 36 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.68435 * 69.44014 * 22 5 4 38 38 H 1.09002 * 109.68051 * 189.95796 * 22 5 4 39 39 H 1.08992 * 109.46947 * 60.00033 * 25 23 22 40 40 H 1.09002 * 109.46908 * 180.02562 * 25 23 22 41 41 H 1.08992 * 109.46806 * 299.99961 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0424 -0.7199 -1.2476 5 7 3.5011 -0.8762 -1.1336 6 6 4.3193 -0.5034 -2.1377 7 8 5.5194 -0.6354 -2.0227 8 6 3.7430 0.0776 -3.4031 9 8 4.8198 0.3973 -4.3231 10 6 4.4729 0.9270 -5.5067 11 8 3.3081 1.1168 -5.7656 12 6 5.5364 1.2839 -6.5132 13 16 4.7576 1.9703 -7.9959 14 6 6.1887 2.2903 -8.9728 15 1 7.1698 2.0585 -8.5854 16 6 6.0550 2.8412 -10.2398 17 7 4.8594 3.1251 -10.7113 18 14 7.5723 3.1811 -11.2752 19 1 7.8871 1.9863 -12.0991 20 1 7.3146 4.3419 -12.1648 21 1 8.7212 3.4852 -10.3849 22 6 4.0406 -1.4459 0.1113 23 6 3.4312 -0.6856 1.2947 24 1 3.8037 0.3388 1.3000 25 6 3.8212 -1.3779 2.6023 26 8 2.0075 -0.6764 1.1654 27 1 -0.3633 0.5119 0.8910 28 1 -0.3633 0.5158 -0.8888 29 1 -0.3634 -1.0276 -0.0024 30 1 1.8043 -0.1314 -2.1335 31 1 1.5727 -1.7009 -1.3208 32 1 3.1867 0.9846 -3.1661 33 1 3.0740 -0.6488 -3.8645 34 1 6.2116 2.0229 -6.0818 35 1 6.0992 0.3893 -6.7798 36 1 4.7660 3.5098 -11.5968 37 1 3.7755 -2.5011 0.1772 38 1 5.1252 -1.3383 0.1244 39 1 4.9068 -1.3885 2.6980 40 1 3.3872 -0.8370 3.4432 41 1 3.4468 -2.4015 2.5970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914684322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = -184.073992 kcal Electronic energy + Delta-G solvation = -23940.368765 eV Core-core repulsion = 20139.244760 eV Total energy + Delta-G solvation = -3801.124005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97250 -41.26080 -39.64419 -37.56418 -36.05831 -34.91285 -34.61623 -31.97005 -31.34239 -29.97037 -27.82612 -27.68381 -26.64151 -23.08435 -22.71780 -22.25877 -20.66411 -19.96813 -18.92629 -18.38798 -18.06253 -17.87559 -17.50244 -16.90173 -16.74646 -16.66452 -16.31008 -15.99147 -15.25944 -15.13664 -15.06937 -14.57936 -14.36161 -14.08521 -13.75248 -13.61006 -13.41187 -13.18958 -13.10814 -13.05216 -12.90272 -12.87222 -12.68028 -12.62025 -12.06275 -12.00316 -11.83050 -11.79239 -11.74277 -11.25005 -11.16404 -11.02763 -10.40830 -9.77300 -8.73821 -8.38266 -6.17518 0.76535 1.02028 1.21710 1.34423 1.42944 1.48298 1.57896 2.02582 2.23159 2.57092 2.96847 3.07947 3.26199 3.51367 3.70070 3.78886 3.85892 3.92199 3.93047 3.99423 4.02583 4.14786 4.26310 4.34825 4.42445 4.43343 4.59695 4.70766 4.72379 4.93342 4.96314 4.99479 5.02780 5.14662 5.27324 5.32045 5.41204 5.95963 6.13761 6.17799 6.55026 6.78637 7.03866 8.70818 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.002213 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.099308 B =12646.674677 C =13333.083837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.062 0.938 4 C 0.067 3.933 5 N -0.610 5.610 6 C 0.523 3.477 7 O -0.558 6.558 8 C 0.043 3.957 9 O -0.341 6.341 10 C 0.494 3.506 11 O -0.508 6.508 12 C -0.111 4.111 13 S -0.126 6.126 14 C -0.550 4.550 15 H 0.084 0.916 16 C 0.017 3.983 17 N -0.908 5.908 18 Si 0.998 3.002 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.260 1.260 22 C 0.082 3.918 23 C 0.077 3.923 24 H 0.057 0.943 25 C -0.139 4.139 26 O -0.383 6.383 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 -9.069 26.039 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.080 0.920 4 C -0.055 4.055 5 N -0.345 5.345 6 C 0.311 3.689 7 O -0.436 6.436 8 C -0.034 4.034 9 O -0.258 6.258 10 C 0.336 3.664 11 O -0.396 6.396 12 C -0.259 4.259 13 S 0.101 5.899 14 C -0.698 4.698 15 H 0.102 0.898 16 C -0.188 4.188 17 N -0.544 5.544 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.040 4.040 23 C 0.018 3.982 24 H 0.075 0.925 25 C -0.197 4.197 26 O -0.303 6.303 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.751 -8.944 25.813 28.397 hybrid contribution 1.992 0.189 -0.679 2.113 sum -5.760 -8.755 25.134 27.231 Atomic orbital electron populations 1.21751 0.90232 1.03899 1.03926 1.22518 0.97004 0.95072 0.84130 0.92018 1.22814 0.78036 1.03874 1.00763 1.48118 1.07853 1.62562 1.15919 1.20207 0.86382 0.77765 0.84588 1.90737 1.16235 1.55402 1.81190 1.22959 0.88974 1.03850 0.87628 1.86550 1.39333 1.73867 1.26036 1.22975 0.89426 0.73205 0.80801 1.90659 1.20949 1.50338 1.77655 1.23107 0.99721 1.06535 0.96564 1.85395 1.13762 1.80874 1.09863 1.23195 0.93612 1.49177 1.03828 0.89780 1.26086 1.00566 0.94071 0.98066 1.70142 1.24384 1.41263 1.18609 0.84954 0.77251 0.78158 0.77641 1.19276 1.20122 1.18421 1.22505 1.00587 0.98632 0.82265 1.22517 0.81134 0.99038 0.95496 0.92466 1.21729 1.02527 1.01315 0.94082 1.87981 1.21010 1.77542 1.43776 0.91276 0.89031 0.91052 0.87105 0.88344 0.86077 0.86002 0.86165 0.86155 0.91782 0.89204 0.89019 0.89549 0.90958 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 71.98 0.69 -0.45 16 2 C 0.07 0.85 3.39 30.56 0.10 0.95 16 3 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 4 C 0.07 0.80 5.81 86.22 0.50 1.30 16 5 N -0.61 -10.99 3.03 -818.14 -2.48 -13.46 16 6 C 0.52 12.98 7.79 87.65 0.68 13.66 16 7 O -0.56 -18.64 15.97 15.74 0.25 -18.39 16 8 C 0.04 1.02 4.32 71.23 0.31 1.33 16 9 O -0.34 -11.16 9.75 -45.06 -0.44 -11.60 16 10 C 0.49 18.42 7.98 71.24 0.57 18.99 16 11 O -0.51 -20.90 15.61 21.98 0.34 -20.56 16 12 C -0.11 -4.49 6.27 71.24 0.45 -4.04 16 13 S -0.13 -6.73 20.58 -56.49 -1.16 -7.89 16 14 C -0.55 -30.84 9.50 67.96 0.65 -30.20 16 15 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 16 C 0.02 0.97 5.49 84.86 0.47 1.44 16 17 N -0.91 -54.16 13.22 21.65 0.29 -53.88 16 18 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 C 0.08 1.32 5.93 86.35 0.51 1.83 16 23 C 0.08 1.05 3.40 30.70 0.10 1.16 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 C -0.14 -1.32 9.57 71.99 0.69 -0.63 16 26 O -0.38 -5.73 10.03 -148.98 -1.49 -7.23 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.11 1.04 6.05 -2.39 -0.01 1.02 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.12 2.39 7.64 -2.39 -0.02 2.38 16 33 H 0.12 2.43 8.02 -2.39 -0.02 2.41 16 34 H 0.12 4.51 8.14 -2.39 -0.02 4.49 16 35 H 0.12 4.52 8.14 -2.40 -0.02 4.50 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.73 7.08 -2.39 -0.02 1.71 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -75.43 360.66 4.08 -71.36 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.03 Total: 11.29 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.71 Total: 5.33 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -2.19 Total: -67.34 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -1.34 Total: -57.77 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.16 Total: -7.89 kcal Total: -75.43 4.08 -71.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.717 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds