Wall clock time and date at job start Tue Mar 31 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99918 * 2 1 4 4 H 1.48494 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46831 * 299.99984 * 3 2 1 6 6 H 1.48501 * 109.47156 * 59.99828 * 3 2 1 7 7 C 1.37876 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00039 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.28247 * 313.06910 * 9 7 2 11 11 C 1.53495 * 114.20861 * 179.97438 * 9 7 2 12 12 N 1.47065 * 87.98578 * 220.14716 * 11 9 7 13 13 C 1.34779 * 136.05802 * 207.08028 * 12 11 9 14 14 O 1.21282 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.53006 * 109.46866 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.38745 * 55.21218 * 16 15 13 18 18 C 1.52590 * 109.38550 * 295.52316 * 16 15 13 19 19 C 1.52583 * 110.64127 * 169.85778 * 18 16 15 20 20 C 1.53035 * 109.98856 * 69.98953 * 19 18 16 21 21 S 1.81676 * 108.99544 * 296.35189 * 20 19 18 22 22 O 1.42097 * 108.66211 * 299.96508 * 21 20 19 23 23 O 1.42098 * 108.66278 * 168.62876 * 21 20 19 24 24 C 1.53042 * 109.38047 * 174.99814 * 16 15 13 25 25 C 1.47059 * 87.88483 * 27.34370 * 12 11 9 26 26 H 0.96998 * 120.00394 * 0.02562 * 1 2 3 27 27 H 0.96696 * 114.00639 * 46.92777 * 10 9 7 28 28 H 1.09000 * 113.46435 * 105.36824 * 11 9 7 29 29 H 1.08999 * 113.46831 * 334.93359 * 11 9 7 30 30 H 1.08993 * 109.47512 * 60.00410 * 15 13 12 31 31 H 1.09000 * 109.47247 * 300.00119 * 15 13 12 32 32 H 1.08996 * 109.24102 * 290.15755 * 18 16 15 33 33 H 1.09003 * 109.23945 * 49.55829 * 18 16 15 34 34 H 1.08999 * 109.38516 * 309.83112 * 19 18 16 35 35 H 1.09003 * 109.38581 * 190.14462 * 19 18 16 36 36 H 1.08995 * 109.55244 * 176.49604 * 20 19 18 37 37 H 1.09000 * 109.63039 * 56.24752 * 20 19 18 38 38 H 1.08995 * 109.54892 * 303.65814 * 24 16 15 39 39 H 1.09003 * 109.54621 * 63.95543 * 24 16 15 40 40 H 1.08999 * 113.47019 * 87.43871 * 25 12 11 41 41 H 1.09002 * 113.46932 * 217.87603 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.1921 -2.5400 0.9591 11 6 2.1489 -3.7442 0.0005 12 7 1.2074 -4.3593 -0.9471 13 6 0.8321 -5.6139 -1.2658 14 8 1.3284 -6.5598 -0.6913 15 6 -0.2042 -5.8415 -2.3360 16 6 -0.4465 -7.3433 -2.5002 17 1 -0.7186 -7.7734 -1.5363 18 6 0.8289 -8.0096 -3.0079 19 6 0.7037 -9.5290 -2.9450 20 6 -0.2984 -10.0151 -3.9945 21 16 -1.9406 -9.3468 -3.5983 22 8 -2.3210 -9.8092 -2.3097 23 8 -2.8036 -9.5760 -4.7038 24 6 -1.5863 -7.5679 -3.4965 25 6 0.8606 -3.0034 -1.3985 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3716 -1.7543 0.9562 28 1 2.1878 -4.2512 0.9647 29 1 3.1374 -3.5666 -0.4231 30 1 0.1498 -5.4251 -3.2790 31 1 -1.1355 -5.3527 -2.0498 32 1 1.0065 -7.7061 -4.0395 33 1 1.6698 -7.6926 -2.3910 34 1 0.3601 -9.8230 -1.9532 35 1 1.6769 -9.9805 -3.1377 36 1 -0.3361 -11.1044 -3.9858 37 1 0.0080 -9.6686 -4.9815 38 1 -2.4763 -7.0375 -3.1581 39 1 -1.2906 -7.1981 -4.4783 40 1 1.5094 -2.6305 -2.1910 41 1 -0.1981 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417717607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:15 Heat of formation + Delta-G solvation = -126.558080 kcal Electronic energy + Delta-G solvation = -25076.453862 eV Core-core repulsion = 21277.823934 eV Total energy + Delta-G solvation = -3798.629928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.118 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.89165 -38.39837 -37.24199 -36.55396 -36.19977 -34.07417 -33.07472 -32.25396 -29.60285 -28.09820 -27.28513 -25.25737 -25.11094 -22.77246 -20.99565 -20.04358 -19.07645 -18.30449 -17.54104 -16.85492 -16.74555 -16.24104 -15.80567 -15.56116 -15.36578 -15.21680 -14.62717 -14.44618 -14.21880 -13.72934 -13.39831 -13.18270 -13.09367 -12.75629 -12.52068 -12.32980 -12.19266 -12.16691 -11.97521 -11.71473 -11.62752 -11.42256 -11.24155 -11.13393 -11.03431 -10.94361 -10.76983 -10.53132 -10.32683 -10.25932 -9.65518 -9.21689 -8.83626 -8.45653 -7.92245 -6.46898 -4.57338 -0.17909 2.44281 3.08532 3.09490 3.18743 3.22021 3.39854 3.47048 3.75936 4.12507 4.26283 4.30756 4.44330 4.54492 4.70470 4.76423 4.84833 5.06939 5.08735 5.28475 5.32059 5.39816 5.43596 5.51548 5.71055 5.79313 5.81555 5.87030 6.07517 6.14045 6.20633 6.33905 6.43133 6.55169 6.60617 7.03955 7.56624 7.73861 8.42892 8.47526 8.66595 9.14481 9.42506 10.59778 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.002755 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.014848 B =10160.007361 C =10473.716506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.240 3.760 10 O -0.571 6.571 11 C 0.106 3.894 12 N -0.634 5.634 13 C 0.533 3.467 14 O -0.561 6.561 15 C -0.125 4.125 16 C -0.060 4.060 17 H 0.101 0.899 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.602 4.602 21 S 2.416 3.584 22 O -0.935 6.935 23 O -0.949 6.949 24 C -0.600 4.600 25 C 0.070 3.930 26 H 0.274 0.726 27 H 0.394 0.606 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -12.034 -9.928 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.198 3.802 10 O -0.384 6.384 11 C -0.016 4.016 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.442 6.442 15 C -0.165 4.165 16 C -0.080 4.080 17 H 0.119 0.881 18 C -0.181 4.181 19 C -0.144 4.144 20 C -0.732 4.732 21 S 2.599 3.401 22 O -0.933 6.933 23 O -0.946 6.946 24 C -0.730 4.730 25 C -0.054 4.054 26 H 0.084 0.916 27 H 0.251 0.749 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.100 0.900 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.926 -13.650 -9.441 16.623 hybrid contribution 0.749 1.962 -0.600 2.184 sum -0.177 -11.688 -10.041 15.410 Atomic orbital electron populations 1.69262 1.06216 1.28173 1.50210 1.25084 0.95029 0.99980 0.92978 0.86257 0.80069 0.82161 0.77915 1.19407 1.20658 1.20578 1.21474 0.93964 0.89757 1.51997 0.90883 1.19585 0.85415 0.91077 0.84155 1.86048 1.45164 1.48410 1.58795 1.23322 0.93733 0.92221 0.92340 1.49758 1.42186 1.04826 1.39899 1.19957 0.83147 0.81018 0.83568 1.90612 1.58219 1.40526 1.54850 1.21574 0.99786 0.96168 0.99019 1.20643 0.92453 0.96535 0.98371 0.88091 1.21932 0.99716 0.93860 1.02548 1.21238 0.99348 0.96187 0.97637 1.30240 1.21333 1.12377 1.09255 1.08021 0.77774 0.78932 0.75356 1.93600 1.80802 1.78887 1.39976 1.93586 1.62387 1.84311 1.54306 1.30356 1.08609 1.25130 1.08866 1.24283 1.00418 0.77919 1.02743 0.91584 0.74936 0.91529 0.89736 0.88925 0.88594 0.91399 0.87460 0.89536 0.89650 0.85079 0.85072 0.84508 0.84761 0.90045 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.97 11.01 55.43 0.61 -21.36 16 2 C 0.07 1.72 5.40 -17.82 -0.10 1.62 16 3 Si 0.91 18.76 29.54 -169.99 -5.02 13.74 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.53 -12.84 8.70 -34.44 -0.30 -13.14 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.50 1.58 -91.12 -0.14 5.35 16 10 O -0.57 -14.30 13.55 -35.23 -0.48 -14.78 16 11 C 0.11 2.20 8.02 -8.52 -0.07 2.13 16 12 N -0.63 -12.39 3.69 -185.08 -0.68 -13.07 16 13 C 0.53 9.59 7.70 -10.99 -0.08 9.50 16 14 O -0.56 -11.28 14.76 5.56 0.08 -11.20 16 15 C -0.12 -1.63 5.00 -27.88 -0.14 -1.77 16 16 C -0.06 -0.68 1.68 -90.80 -0.15 -0.83 16 17 H 0.10 1.29 7.82 -51.93 -0.41 0.88 16 18 C -0.14 -1.45 4.72 -27.15 -0.13 -1.57 16 19 C -0.11 -0.91 5.73 -26.93 -0.15 -1.06 16 20 C -0.60 -4.16 6.35 37.18 0.24 -3.93 16 21 S 2.42 22.96 5.31 -107.50 -0.57 22.39 16 22 O -0.94 -12.55 17.94 -57.81 -1.04 -13.58 16 23 O -0.95 -11.83 18.10 -57.81 -1.05 -12.88 16 24 C -0.60 -4.99 5.62 37.18 0.21 -4.78 16 25 C 0.07 1.39 7.86 -8.39 -0.07 1.32 16 26 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 27 H 0.39 9.98 6.32 45.56 0.29 10.27 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.11 1.38 5.74 -51.93 -0.30 1.08 16 34 H 0.09 0.82 8.01 -51.93 -0.42 0.41 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -32.10 345.16 -9.27 -41.37 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.44 Total: 11.31 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.89 Total: -7.15 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.07 Total: -34.43 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.48 Total: -52.44 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 16 Polarization: 22.96 SS G_CDS: -0.57 Total: 22.39 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.10 -9.27 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417717607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.187 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds