Wall clock time and date at job start Tue Mar 31 2020 04:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47556 * 345.47176 * 3 2 1 5 5 C 1.37095 * 120.00210 * 263.87741 * 4 3 2 6 6 H 1.08004 * 119.99597 * 201.32615 * 5 4 3 7 7 C 1.38945 * 120.00010 * 21.32543 * 5 4 3 8 8 N 1.31415 * 120.00160 * 11.08191 * 7 5 4 9 9 Si 1.86801 * 119.99856 * 191.08125 * 7 5 4 10 10 H 1.48500 * 109.47172 * 60.00272 * 9 7 5 11 11 H 1.48502 * 109.47021 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47095 * 300.00161 * 9 7 5 13 13 C 1.34779 * 119.99489 * 83.87585 * 4 3 2 14 14 O 1.21294 * 119.99772 * 185.14948 * 13 4 3 15 15 C 1.50700 * 120.00177 * 5.14023 * 13 4 3 16 16 H 1.08994 * 110.86254 * 323.44003 * 15 13 4 17 17 C 1.54636 * 110.96453 * 87.22818 * 15 13 4 18 18 C 1.51281 * 104.19457 * 142.91437 * 17 15 13 19 19 O 1.21283 * 124.94221 * 163.72148 * 18 17 15 20 20 N 1.34416 * 110.11765 * 343.74681 * 18 17 15 21 21 C 1.46503 * 124.35380 * 179.59278 * 20 18 17 22 22 C 1.50697 * 109.46996 * 90.01949 * 21 20 18 23 23 C 1.34510 * 125.78555 * 90.00708 * 22 21 20 24 24 C 1.41387 * 106.84144 * 179.97438 * 23 22 21 25 25 C 1.34519 * 106.83532 * 0.02562 * 24 23 22 26 26 O 1.34296 * 108.42330 * 359.73426 * 25 24 23 27 27 C 1.46762 * 111.30210 * 359.85680 * 20 18 17 28 28 H 1.09001 * 109.46702 * 225.47470 * 3 2 1 29 29 H 1.09001 * 109.46733 * 105.47864 * 3 2 1 30 30 H 0.96994 * 119.99555 * 179.97438 * 8 7 5 31 31 H 1.08992 * 110.48831 * 24.23762 * 17 15 13 32 32 H 1.09003 * 110.59344 * 261.64539 * 17 15 13 33 33 H 1.09001 * 109.47622 * 210.02846 * 21 20 18 34 34 H 1.09003 * 109.46594 * 330.02652 * 21 20 18 35 35 H 1.08000 * 126.58295 * 0.03368 * 23 22 21 36 36 H 1.07991 * 126.58463 * 179.97438 * 24 23 22 37 37 H 1.08003 * 125.78248 * 179.97438 * 25 24 23 38 38 H 1.09004 * 110.24722 * 135.75123 * 27 20 18 39 39 H 1.08997 * 110.24904 * 257.75262 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3361 0.3465 5 6 3.4451 -1.6246 1.6407 6 1 4.1092 -2.4502 1.8501 7 6 2.9436 -0.8548 2.6831 8 7 1.9743 0.0037 2.4586 9 14 3.6472 -1.0402 4.4035 10 1 5.0963 -0.7161 4.3833 11 1 2.9461 -0.1129 5.3276 12 1 3.4591 -2.4383 4.8673 13 6 3.2047 -2.2823 -0.6073 14 8 3.5198 -3.4142 -0.3058 15 6 2.9334 -1.9342 -2.0482 16 1 2.1183 -1.2149 -2.1269 17 6 4.2104 -1.4011 -2.7384 18 6 4.1355 -1.9621 -4.1413 19 8 4.7865 -1.5644 -5.0842 20 7 3.2422 -2.9652 -4.1910 21 6 2.9172 -3.7237 -5.4016 22 6 3.8338 -4.9150 -5.5092 23 6 3.5989 -6.1368 -4.9980 24 6 4.7121 -6.9418 -5.3326 25 6 5.5609 -6.1633 -6.0277 26 8 5.0212 -4.9384 -6.1363 27 6 2.6295 -3.1991 -2.8781 28 1 2.9710 0.7215 0.7327 29 1 2.9712 0.2751 -0.9904 30 1 1.6240 0.5408 3.1864 31 1 5.1011 -1.7674 -2.2282 32 1 4.2066 -0.3113 -2.7627 33 1 1.8830 -4.0643 -5.3504 34 1 3.0467 -3.0855 -6.2758 35 1 2.7268 -6.4444 -4.4401 36 1 4.8541 -7.9816 -5.0782 37 1 6.5129 -6.4724 -6.4333 38 1 1.5528 -3.3332 -2.9827 39 1 3.0750 -4.0738 -2.4043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162021123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:19 Heat of formation + Delta-G solvation = -1.805413 kcal Electronic energy + Delta-G solvation = -26290.758081 eV Core-core repulsion = 22394.386634 eV Total energy + Delta-G solvation = -3896.371447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.59505 -40.53926 -38.73505 -36.33385 -35.76169 -34.44707 -33.65233 -32.84911 -31.86770 -29.87620 -27.70736 -27.44314 -26.30142 -24.99609 -22.54368 -21.76036 -20.86030 -19.56941 -19.01529 -18.00272 -17.62266 -17.29603 -16.65315 -16.32381 -15.78833 -15.59122 -15.37111 -14.71063 -14.27710 -14.20945 -14.10640 -13.52660 -13.21834 -13.07875 -13.02735 -12.86861 -12.78941 -12.76698 -12.40432 -12.07182 -11.89892 -11.67175 -11.44274 -11.23260 -11.17970 -10.99740 -10.63380 -10.49749 -10.46797 -9.99329 -9.83213 -9.35826 -8.92296 -8.69589 -8.55686 -8.15980 -6.57575 -4.15975 1.56975 2.47628 2.60627 2.96820 3.04728 3.14894 3.17167 3.20005 3.40234 3.64148 3.91049 4.02089 4.33184 4.56915 4.59850 4.67689 4.83580 4.92425 4.96238 5.10033 5.13877 5.15404 5.19806 5.29746 5.58354 5.63670 5.71697 5.75108 5.83134 5.94268 6.00332 6.04433 6.17658 6.39916 6.46533 6.51689 7.01123 7.14888 7.35381 7.76760 8.15317 8.20116 8.66458 8.86745 9.05820 9.56875 10.46930 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.003458 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.413379 B = 8095.798673 C = 8693.006565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.248 3.752 3 C 0.219 3.781 4 N -0.437 5.437 5 C -0.309 4.309 6 H 0.107 0.893 7 C 0.033 3.967 8 N -0.885 5.885 9 Si 0.934 3.066 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.465 3.535 14 O -0.566 6.566 15 C -0.119 4.119 16 H 0.101 0.899 17 C -0.139 4.139 18 C 0.524 3.476 19 O -0.530 6.530 20 N -0.616 5.616 21 C 0.207 3.793 22 C -0.034 4.034 23 C -0.193 4.193 24 C -0.217 4.217 25 C -0.039 4.039 26 O -0.167 6.167 27 C 0.116 3.884 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.276 0.724 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.081 0.919 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -4.833 -12.677 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.071 4.071 3 C 0.092 3.908 4 N -0.156 5.156 5 C -0.436 4.436 6 H 0.125 0.875 7 C -0.170 4.170 8 N -0.524 5.524 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.252 3.748 14 O -0.448 6.448 15 C -0.141 4.141 16 H 0.119 0.881 17 C -0.180 4.180 18 C 0.312 3.688 19 O -0.407 6.407 20 N -0.350 5.350 21 C 0.085 3.915 22 C -0.086 4.086 23 C -0.213 4.213 24 C -0.236 4.236 25 C -0.107 4.107 26 O -0.062 6.062 27 C -0.006 4.006 28 H 0.153 0.847 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.217 0.783 38 H 0.099 0.901 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.335 -4.814 -13.078 14.130 hybrid contribution 0.513 -0.330 1.263 1.402 sum 2.848 -5.145 -11.815 13.197 Atomic orbital electron populations 1.80912 1.13592 1.08382 1.12535 1.29276 0.95334 0.92601 0.89853 1.18829 0.81582 0.89157 1.01259 1.43528 1.56067 1.07822 1.08173 1.19709 1.26846 1.16838 0.80177 0.87506 1.25344 0.94903 0.96404 1.00398 1.69714 1.23774 1.24948 1.34006 0.85852 0.78935 0.78491 0.80663 1.19622 1.20900 1.19774 1.19552 0.84116 0.85292 0.85797 1.90566 1.52087 1.19971 1.82196 1.22156 0.98730 0.98284 0.94954 0.88130 1.22314 0.99640 1.03063 0.92943 1.20959 0.78077 0.79167 0.90548 1.90712 1.45266 1.63039 1.41670 1.48379 1.42508 1.34333 1.09819 1.19640 0.95220 0.88379 0.88267 1.22925 0.87394 0.97772 1.00479 1.21658 1.01459 0.93133 1.05023 1.21842 0.95730 1.01455 1.04587 1.24073 1.00223 0.82430 1.04009 1.84084 1.29628 1.32584 1.59928 1.22047 0.98689 0.98984 0.80916 0.84697 0.90165 0.91368 0.86968 0.87273 0.86967 0.88302 0.83341 0.83473 0.78257 0.90081 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.63 18.54 42.15 0.78 -9.84 16 2 C 0.25 5.10 12.86 -20.76 -0.27 4.83 16 3 C 0.22 3.99 4.78 -6.83 -0.03 3.95 16 4 N -0.44 -9.29 2.60 -117.93 -0.31 -9.60 16 5 C -0.31 -7.40 9.29 -14.94 -0.14 -7.54 16 6 H 0.11 2.69 7.43 -52.48 -0.39 2.30 16 7 C 0.03 0.76 5.10 -17.47 -0.09 0.67 16 8 N -0.89 -21.04 9.06 55.50 0.50 -20.53 16 9 Si 0.93 18.90 29.57 -169.99 -5.03 13.87 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.47 9.40 6.69 -10.98 -0.07 9.32 16 14 O -0.57 -13.40 15.32 5.54 0.08 -13.31 16 15 C -0.12 -1.81 2.51 -90.23 -0.23 -2.04 16 16 H 0.10 1.42 6.40 -51.93 -0.33 1.09 16 17 C -0.14 -1.94 6.14 -26.74 -0.16 -2.11 16 18 C 0.52 8.09 8.02 -10.86 -0.09 8.00 16 19 O -0.53 -9.72 17.59 5.55 0.10 -9.63 16 20 N -0.62 -8.34 2.92 -173.89 -0.51 -8.85 16 21 C 0.21 2.35 6.46 -5.19 -0.03 2.32 16 22 C -0.03 -0.44 6.90 -35.63 -0.25 -0.69 16 23 C -0.19 -2.31 10.81 -39.70 -0.43 -2.74 16 24 C -0.22 -2.42 10.91 -39.70 -0.43 -2.85 16 25 C -0.04 -0.43 12.09 29.42 0.36 -0.08 16 26 O -0.17 -2.34 10.65 5.73 0.06 -2.28 16 27 C 0.12 1.63 6.84 -3.21 -0.02 1.60 16 28 H 0.14 2.56 6.37 -51.93 -0.33 2.23 16 29 H 0.08 1.09 6.11 -51.93 -0.32 0.78 16 30 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.11 1.65 7.89 -51.93 -0.41 1.24 16 32 H 0.11 1.27 7.69 -51.93 -0.40 0.87 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.11 7.93 -51.93 -0.41 0.70 16 35 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.20 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.55 6.85 -51.93 -0.36 1.19 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -32.16 342.42 -5.23 -37.40 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.20 Total: 4.95 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -1.89 Total: 12.67 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.47 Total: -48.83 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.24 Total: -25.22 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.16 -5.23 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162021123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.590 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds