Wall clock time and date at job start Tue Mar 31 2020 04:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47556 * 345.47176 * 3 2 1 5 5 C 1.37095 * 120.00210 * 263.87741 * 4 3 2 6 6 H 1.08004 * 119.99597 * 201.32615 * 5 4 3 7 7 C 1.38945 * 120.00010 * 21.32543 * 5 4 3 8 8 N 1.31415 * 120.00160 * 11.08191 * 7 5 4 9 9 Si 1.86801 * 119.99856 * 191.08125 * 7 5 4 10 10 H 1.48500 * 109.47172 * 60.00272 * 9 7 5 11 11 H 1.48502 * 109.47021 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47095 * 300.00161 * 9 7 5 13 13 C 1.34779 * 119.99489 * 83.87585 * 4 3 2 14 14 O 1.21294 * 119.99772 * 185.14948 * 13 4 3 15 15 C 1.50700 * 120.00177 * 5.14023 * 13 4 3 16 16 H 1.08994 * 110.86254 * 323.44003 * 15 13 4 17 17 C 1.54636 * 110.96453 * 87.22818 * 15 13 4 18 18 C 1.51281 * 104.19457 * 142.91437 * 17 15 13 19 19 O 1.21283 * 124.94221 * 163.72148 * 18 17 15 20 20 N 1.34416 * 110.11765 * 343.74681 * 18 17 15 21 21 C 1.46503 * 124.35380 * 179.59278 * 20 18 17 22 22 C 1.50697 * 109.46996 * 90.01949 * 21 20 18 23 23 C 1.34510 * 125.78555 * 90.00708 * 22 21 20 24 24 C 1.41387 * 106.84144 * 179.97438 * 23 22 21 25 25 C 1.34519 * 106.83532 * 0.02562 * 24 23 22 26 26 O 1.34296 * 108.42330 * 359.73426 * 25 24 23 27 27 C 1.46762 * 111.30210 * 359.85680 * 20 18 17 28 28 H 1.09001 * 109.46702 * 225.47470 * 3 2 1 29 29 H 1.09001 * 109.46733 * 105.47864 * 3 2 1 30 30 H 0.96994 * 119.99555 * 179.97438 * 8 7 5 31 31 H 1.08992 * 110.48831 * 24.23762 * 17 15 13 32 32 H 1.09003 * 110.59344 * 261.64539 * 17 15 13 33 33 H 1.09001 * 109.47622 * 210.02846 * 21 20 18 34 34 H 1.09003 * 109.46594 * 330.02652 * 21 20 18 35 35 H 1.08000 * 126.58295 * 0.03368 * 23 22 21 36 36 H 1.07991 * 126.58463 * 179.97438 * 24 23 22 37 37 H 1.08003 * 125.78248 * 179.97438 * 25 24 23 38 38 H 1.09004 * 110.24722 * 135.75123 * 27 20 18 39 39 H 1.08997 * 110.24904 * 257.75262 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3361 0.3465 5 6 3.4451 -1.6246 1.6407 6 1 4.1092 -2.4502 1.8501 7 6 2.9436 -0.8548 2.6831 8 7 1.9743 0.0037 2.4586 9 14 3.6472 -1.0402 4.4035 10 1 5.0963 -0.7161 4.3833 11 1 2.9461 -0.1129 5.3276 12 1 3.4591 -2.4383 4.8673 13 6 3.2047 -2.2823 -0.6073 14 8 3.5198 -3.4142 -0.3058 15 6 2.9334 -1.9342 -2.0482 16 1 2.1183 -1.2149 -2.1269 17 6 4.2104 -1.4011 -2.7384 18 6 4.1355 -1.9621 -4.1413 19 8 4.7865 -1.5644 -5.0842 20 7 3.2422 -2.9652 -4.1910 21 6 2.9172 -3.7237 -5.4016 22 6 3.8338 -4.9150 -5.5092 23 6 3.5989 -6.1368 -4.9980 24 6 4.7121 -6.9418 -5.3326 25 6 5.5609 -6.1633 -6.0277 26 8 5.0212 -4.9384 -6.1363 27 6 2.6295 -3.1991 -2.8781 28 1 2.9710 0.7215 0.7327 29 1 2.9712 0.2751 -0.9904 30 1 1.6240 0.5408 3.1864 31 1 5.1011 -1.7674 -2.2282 32 1 4.2066 -0.3113 -2.7627 33 1 1.8830 -4.0643 -5.3504 34 1 3.0467 -3.0855 -6.2758 35 1 2.7268 -6.4444 -4.4401 36 1 4.8541 -7.9816 -5.0782 37 1 6.5129 -6.4724 -6.4333 38 1 1.5528 -3.3332 -2.9827 39 1 3.0750 -4.0738 -2.4043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162021123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:19 Heat of formation + Delta-G solvation = -21.697523 kcal Electronic energy + Delta-G solvation = -26291.620667 eV Core-core repulsion = 22394.386634 eV Total energy + Delta-G solvation = -3897.234033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.50256 -41.80117 -40.24572 -37.76927 -37.25229 -36.13316 -34.77328 -33.85319 -33.49727 -30.91361 -29.21230 -28.72007 -27.43544 -26.45816 -23.88347 -22.67889 -21.79701 -20.76971 -20.40237 -19.69964 -18.77354 -18.50892 -17.87929 -17.72115 -17.04322 -16.74391 -16.54036 -16.14826 -15.80417 -15.57766 -15.32256 -14.72085 -14.68010 -14.47199 -14.33532 -14.06696 -13.75157 -13.74071 -13.67643 -13.49338 -13.28759 -13.10454 -12.87717 -12.79618 -12.45376 -12.32556 -12.23162 -12.11696 -12.07324 -11.14142 -11.08191 -10.85592 -10.42939 -9.93450 -9.89936 -9.47194 -8.35388 -5.99001 0.65035 1.40370 1.44326 1.50477 1.57689 1.60833 1.78454 2.04043 2.09694 2.21123 2.30439 2.37513 2.95881 3.05054 3.33318 3.47535 3.66223 3.75096 3.87841 3.91828 4.09366 4.12599 4.24693 4.31186 4.42842 4.54902 4.58192 4.69150 4.85622 4.89718 4.97857 4.98393 5.03082 5.16861 5.38037 5.49067 5.58672 5.92874 6.05302 6.21881 6.40647 7.03390 7.05139 7.12979 7.35253 7.89402 8.65945 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.003458 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.413379 B = 8095.798673 C = 8693.006565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.260 3.740 3 C 0.220 3.780 4 N -0.449 5.449 5 C -0.331 4.331 6 H 0.085 0.915 7 C 0.006 3.994 8 N -0.898 5.898 9 Si 0.986 3.014 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.466 3.534 14 O -0.606 6.606 15 C -0.109 4.109 16 H 0.121 0.879 17 C -0.133 4.133 18 C 0.521 3.479 19 O -0.563 6.563 20 N -0.609 5.609 21 C 0.203 3.797 22 C -0.058 4.058 23 C -0.198 4.198 24 C -0.230 4.230 25 C -0.043 4.043 26 O -0.194 6.194 27 C 0.121 3.879 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.274 0.726 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -4.633 -13.407 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.058 4.058 3 C 0.094 3.906 4 N -0.168 5.168 5 C -0.458 4.458 6 H 0.103 0.897 7 C -0.195 4.195 8 N -0.537 5.537 9 Si 0.811 3.189 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.210 1.210 13 C 0.255 3.745 14 O -0.491 6.491 15 C -0.131 4.131 16 H 0.139 0.861 17 C -0.173 4.173 18 C 0.310 3.690 19 O -0.442 6.442 20 N -0.341 5.341 21 C 0.082 3.918 22 C -0.109 4.109 23 C -0.218 4.218 24 C -0.249 4.249 25 C -0.111 4.111 26 O -0.091 6.091 27 C -0.002 4.002 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.116 0.884 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.249 0.751 38 H 0.126 0.874 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.252 -4.614 -13.817 14.740 hybrid contribution 0.561 -0.511 1.471 1.656 sum 2.813 -5.124 -12.346 13.660 Atomic orbital electron populations 1.80919 1.14719 1.09461 1.13833 1.29724 0.95757 0.91548 0.88755 1.19117 0.80107 0.87458 1.03946 1.43674 1.56260 1.09256 1.07617 1.19624 1.27369 1.16842 0.81991 0.89738 1.25859 0.94963 0.96045 1.02681 1.69802 1.24172 1.25231 1.34477 0.85079 0.78881 0.77536 0.77427 1.18629 1.20646 1.21005 1.20309 0.82255 0.84463 0.87497 1.90545 1.53408 1.21780 1.83361 1.22050 1.00016 0.99506 0.91528 0.86097 1.22326 0.98426 1.04857 0.91719 1.21135 0.77889 0.79466 0.90529 1.90698 1.46585 1.64269 1.42697 1.48424 1.41674 1.33791 1.10248 1.19958 0.96767 0.87909 0.87188 1.23216 0.87626 0.98622 1.01402 1.21976 1.02143 0.93098 1.04600 1.22213 0.95539 1.02544 1.04629 1.24817 1.01234 0.81528 1.03491 1.84070 1.30342 1.34023 1.60636 1.21978 1.00040 0.97407 0.80739 0.85267 0.84898 0.91595 0.87864 0.84309 0.83515 0.88364 0.82034 0.81424 0.75086 0.87428 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.14 18.54 20.01 0.37 -21.77 16 2 C 0.26 10.25 12.86 89.44 1.15 11.40 16 3 C 0.22 7.55 4.78 84.58 0.40 7.96 16 4 N -0.45 -18.71 2.60 -645.41 -1.68 -20.39 16 5 C -0.33 -15.90 9.29 84.04 0.78 -15.12 16 6 H 0.08 4.37 7.43 -2.91 -0.02 4.35 16 7 C 0.01 0.28 5.10 84.92 0.43 0.72 16 8 N -0.90 -42.02 9.06 21.66 0.20 -41.82 16 9 Si 0.99 38.52 29.57 68.60 2.03 40.55 16 10 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 11 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.47 18.41 6.69 87.66 0.59 19.00 16 14 O -0.61 -28.93 15.32 -3.07 -0.05 -28.98 16 15 C -0.11 -3.07 2.51 -10.54 -0.03 -3.10 16 16 H 0.12 2.98 6.40 -2.39 -0.02 2.96 16 17 C -0.13 -3.43 6.14 30.59 0.19 -3.24 16 18 C 0.52 15.27 8.02 87.90 0.71 15.97 16 19 O -0.56 -20.12 17.59 -3.04 -0.05 -20.18 16 20 N -0.61 -15.39 2.92 -822.66 -2.40 -17.79 16 21 C 0.20 4.26 6.46 85.63 0.55 4.82 16 22 C -0.06 -1.44 6.90 24.83 0.17 -1.27 16 23 C -0.20 -4.51 10.81 22.19 0.24 -4.27 16 24 C -0.23 -4.82 10.91 22.19 0.24 -4.57 16 25 C -0.04 -0.91 12.09 66.97 0.81 -0.10 16 26 O -0.19 -5.34 10.65 -2.41 -0.03 -5.37 16 27 C 0.12 3.15 6.84 86.77 0.59 3.75 16 28 H 0.13 4.69 6.37 -2.39 -0.02 4.67 16 29 H 0.13 3.12 6.11 -2.39 -0.01 3.10 16 30 H 0.27 12.60 8.31 -92.71 -0.77 11.83 16 31 H 0.10 2.91 7.89 -2.39 -0.02 2.89 16 32 H 0.14 2.72 7.69 -2.39 -0.02 2.70 16 33 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.09 7.93 -2.39 -0.02 2.07 16 35 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.17 2.65 8.06 -2.92 -0.02 2.63 16 37 H 0.23 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.07 2.33 6.85 -2.39 -0.02 2.31 16 Total: -1.00 -70.51 342.42 6.33 -64.18 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 1.10 Total: 19.61 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: 6.83 Total: 31.95 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -3.51 Total: -101.77 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.13 Total: -54.52 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -70.51 6.33 -64.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162021123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.484 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds