Wall clock time and date at job start Tue Mar 31 2020 04:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99965 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00017 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00001 * 3 2 1 6 6 H 1.48493 * 109.47123 * 149.99910 * 3 2 1 7 7 C 1.38953 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99517 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99695 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99944 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46835 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 N 1.29903 * 124.85486 * 89.69452 * 18 17 16 20 20 C 1.36061 * 108.80186 * 179.90021 * 19 18 17 21 21 C 1.39591 * 133.80758 * 180.10115 * 20 19 18 22 22 C 1.37678 * 119.72812 * 180.26045 * 21 20 19 23 23 C 1.38716 * 120.42491 * 0.04553 * 22 21 20 24 24 C 1.37911 * 120.47416 * 359.95129 * 23 22 21 25 25 C 1.38669 * 119.87742 * 0.02565 * 24 23 22 26 26 O 1.34227 * 124.85853 * 270.00124 * 18 17 16 27 27 H 0.96996 * 120.00229 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00597 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46980 * 60.00059 * 12 10 9 30 30 H 1.09002 * 109.47152 * 300.00160 * 12 10 9 31 31 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 32 32 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 33 33 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 34 34 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 35 35 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 36 36 H 1.07994 * 120.13037 * 0.30593 * 21 20 19 37 37 H 1.08007 * 119.78302 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.76371 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.05882 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3741 -3.9980 0.0023 15 8 8.1622 -3.0762 0.0019 16 6 7.8764 -5.4188 0.0024 17 6 9.4064 -5.4189 0.0025 18 6 9.9088 -6.8396 0.0032 19 7 10.1510 -7.5419 -1.0625 20 6 10.5909 -8.7731 -0.6856 21 6 10.9925 -9.9119 -1.3860 22 6 11.3894 -11.0341 -0.6943 23 6 11.3917 -11.0402 0.6928 24 6 10.9975 -9.9223 1.3978 25 6 10.5951 -8.7830 0.7174 26 8 10.1644 -7.5624 1.1049 27 1 -0.4850 0.8400 0.0004 28 1 3.8648 -0.3633 -0.0004 29 1 5.9240 -1.8559 0.8906 30 1 5.9241 -1.8575 -0.8894 31 1 5.4187 -4.4890 0.0024 32 1 7.5127 -5.9328 0.8921 33 1 7.5135 -5.9326 -0.8879 34 1 9.7698 -4.9050 -0.8875 35 1 9.7697 -4.9050 0.8924 36 1 10.9925 -9.9122 -2.4659 37 1 11.7008 -11.9156 -1.2353 38 1 11.7048 -11.9266 1.2246 39 1 11.0023 -9.9343 2.4777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344123378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:28 Heat of formation + Delta-G solvation = -36.389964 kcal Electronic energy + Delta-G solvation = -24121.648418 eV Core-core repulsion = 20223.777273 eV Total energy + Delta-G solvation = -3897.871145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.58907 -39.84343 -38.47014 -38.31488 -35.32493 -34.61781 -33.82492 -33.73376 -31.83819 -31.06641 -29.89485 -28.18279 -25.77555 -24.14586 -23.47914 -22.50952 -21.66094 -20.29642 -19.65686 -18.68372 -18.44004 -17.68879 -17.35373 -16.92082 -15.98716 -15.92391 -15.83658 -15.34117 -14.86688 -14.76567 -14.51938 -14.26412 -14.09352 -13.49054 -13.35482 -13.10619 -12.89989 -12.68069 -12.66249 -12.49958 -12.20337 -12.13490 -11.91227 -11.63215 -11.48292 -11.26228 -10.79609 -10.67109 -10.09767 -9.96352 -9.73267 -9.21660 -8.98741 -8.83734 -8.81300 -8.33913 -6.43725 -3.96557 0.28522 0.81711 2.01826 2.11962 2.62022 2.97027 3.01743 3.08815 3.12618 3.25334 3.51522 3.52139 4.00790 4.12199 4.39414 4.49490 4.49832 4.59605 4.69875 4.74206 4.87520 4.91176 5.01628 5.10869 5.21480 5.43701 5.46378 5.59934 5.62871 5.65822 5.73062 5.75994 5.83934 5.90818 5.91395 6.22294 6.46444 7.28514 7.40289 7.61284 7.96595 8.23398 8.41869 8.78444 9.26365 9.59445 10.68339 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.037529 B = 0.001838 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.907134 B =15227.894039 C =15547.896182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.436 3.564 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.705 5.705 14 C 0.517 3.483 15 O -0.549 6.549 16 C -0.138 4.138 17 C -0.014 4.014 18 C 0.259 3.741 19 N -0.477 5.477 20 C 0.022 3.978 21 C -0.062 4.062 22 C -0.121 4.121 23 C -0.096 4.096 24 C -0.092 4.092 25 C 0.006 3.994 26 O -0.212 6.212 27 H 0.276 0.724 28 H 0.375 0.625 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.784 -17.351 1.116 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.222 3.778 11 O -0.464 6.464 12 C -0.022 4.022 13 N -0.359 5.359 14 C 0.303 3.697 15 O -0.428 6.428 16 C -0.179 4.179 17 C -0.052 4.052 18 C 0.047 3.953 19 N -0.206 5.206 20 C -0.089 4.089 21 C -0.081 4.081 22 C -0.140 4.140 23 C -0.114 4.114 24 C -0.111 4.111 25 C -0.045 4.045 26 O -0.103 6.103 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.252 0.748 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 23.605 -17.051 0.504 29.124 hybrid contribution 0.223 0.832 0.721 1.123 sum 23.828 -16.219 1.224 28.850 Atomic orbital electron populations 1.69616 1.05721 1.27861 1.47993 1.25076 0.95541 0.98195 0.97083 0.86664 0.79894 0.83736 0.79153 1.19369 1.19956 1.19236 1.19444 0.78948 0.96816 1.48759 0.86068 1.42124 1.07718 1.06140 1.65290 1.19634 0.88056 0.84906 0.85177 1.90543 1.69189 1.30895 1.55737 1.20998 0.93833 0.83926 1.03454 1.45683 1.06981 1.09372 1.73904 1.20255 0.82263 0.90828 0.76349 1.90710 1.55326 1.46241 1.50490 1.21601 0.94681 0.95567 1.06033 1.20009 0.94529 0.83218 1.07486 1.26520 0.94566 0.96066 0.78105 1.70689 1.18154 1.02916 1.28877 1.19952 1.03799 0.93809 0.91382 1.20357 0.97515 0.89779 1.00424 1.21067 1.00591 0.98110 0.94252 1.21032 0.98855 0.97307 0.94218 1.19917 1.01545 0.89179 1.00443 1.20367 1.03042 0.86400 0.94644 1.84523 1.67707 1.21745 1.36331 0.91347 0.79225 0.89594 0.89567 0.74813 0.87976 0.87599 0.86092 0.87375 0.84583 0.84500 0.84206 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.71 13.96 55.50 0.77 -23.94 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.75 27.74 -169.99 -4.71 14.04 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.19 6.52 56.52 0.37 -4.83 16 7 C -0.31 -8.47 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 9 N -0.58 -13.12 5.09 -10.96 -0.06 -13.17 16 10 C 0.44 9.33 7.85 -10.98 -0.09 9.24 16 11 O -0.58 -14.31 15.24 5.55 0.08 -14.23 16 12 C 0.11 1.73 6.15 -5.19 -0.03 1.70 16 13 N -0.71 -10.32 5.53 -61.47 -0.34 -10.66 16 14 C 0.52 6.83 7.83 -10.98 -0.09 6.74 16 15 O -0.55 -8.70 15.98 5.56 0.09 -8.61 16 16 C -0.14 -1.33 5.68 -27.88 -0.16 -1.48 16 17 C -0.01 -0.13 5.13 -27.89 -0.14 -0.28 16 18 C 0.26 2.88 7.49 -13.10 -0.10 2.78 16 19 N -0.48 -5.96 11.34 -8.70 -0.10 -6.06 16 20 C 0.02 0.25 7.24 -84.71 -0.61 -0.36 16 21 C -0.06 -0.53 10.10 -39.28 -0.40 -0.93 16 22 C -0.12 -0.75 10.02 -39.61 -0.40 -1.15 16 23 C -0.10 -0.57 10.03 -39.52 -0.40 -0.96 16 24 C -0.09 -0.72 10.06 -39.54 -0.40 -1.12 16 25 C 0.01 0.06 7.43 -38.64 -0.29 -0.22 16 26 O -0.21 -2.43 10.77 3.65 0.04 -2.39 16 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.41 6.00 7.44 -40.82 -0.30 5.70 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.12 1.15 8.10 -51.93 -0.42 0.72 16 35 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -34.14 346.93 -6.65 -40.79 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.32 Total: 12.57 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -3.34 Total: 6.45 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.28 Total: -53.83 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.21 Total: -25.23 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.14 -6.65 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.397 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds