Wall clock time and date at job start Tue Mar 31 2020 04:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99965 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00017 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00001 * 3 2 1 6 6 H 1.48493 * 109.47123 * 149.99910 * 3 2 1 7 7 C 1.38953 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99517 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99695 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99944 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46835 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 N 1.29903 * 124.85486 * 89.69452 * 18 17 16 20 20 C 1.36061 * 108.80186 * 179.90021 * 19 18 17 21 21 C 1.39591 * 133.80758 * 180.10115 * 20 19 18 22 22 C 1.37678 * 119.72812 * 180.26045 * 21 20 19 23 23 C 1.38716 * 120.42491 * 0.04553 * 22 21 20 24 24 C 1.37911 * 120.47416 * 359.95129 * 23 22 21 25 25 C 1.38669 * 119.87742 * 0.02565 * 24 23 22 26 26 O 1.34227 * 124.85853 * 270.00124 * 18 17 16 27 27 H 0.96996 * 120.00229 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00597 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46980 * 60.00059 * 12 10 9 30 30 H 1.09002 * 109.47152 * 300.00160 * 12 10 9 31 31 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 32 32 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 33 33 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 34 34 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 35 35 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 36 36 H 1.07994 * 120.13037 * 0.30593 * 21 20 19 37 37 H 1.08007 * 119.78302 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.76371 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.05882 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3741 -3.9980 0.0023 15 8 8.1622 -3.0762 0.0019 16 6 7.8764 -5.4188 0.0024 17 6 9.4064 -5.4189 0.0025 18 6 9.9088 -6.8396 0.0032 19 7 10.1510 -7.5419 -1.0625 20 6 10.5909 -8.7731 -0.6856 21 6 10.9925 -9.9119 -1.3860 22 6 11.3894 -11.0341 -0.6943 23 6 11.3917 -11.0402 0.6928 24 6 10.9975 -9.9223 1.3978 25 6 10.5951 -8.7830 0.7174 26 8 10.1644 -7.5624 1.1049 27 1 -0.4850 0.8400 0.0004 28 1 3.8648 -0.3633 -0.0004 29 1 5.9240 -1.8559 0.8906 30 1 5.9241 -1.8575 -0.8894 31 1 5.4187 -4.4890 0.0024 32 1 7.5127 -5.9328 0.8921 33 1 7.5135 -5.9326 -0.8879 34 1 9.7698 -4.9050 -0.8875 35 1 9.7697 -4.9050 0.8924 36 1 10.9925 -9.9122 -2.4659 37 1 11.7008 -11.9156 -1.2353 38 1 11.7048 -11.9266 1.2246 39 1 11.0023 -9.9343 2.4777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344123378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:27 Heat of formation + Delta-G solvation = -64.001079 kcal Electronic energy + Delta-G solvation = -24122.845726 eV Core-core repulsion = 20223.777273 eV Total energy + Delta-G solvation = -3899.068453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.32102 -41.09547 -40.04465 -38.98303 -36.33034 -36.07922 -35.33032 -34.54524 -33.83342 -31.64900 -30.70860 -29.45518 -27.00322 -25.65886 -24.15081 -23.17523 -22.45951 -21.47326 -21.36250 -20.49411 -19.08564 -18.69748 -18.18701 -17.81581 -17.33279 -17.09836 -17.00246 -16.54285 -16.32433 -16.04229 -15.40374 -15.15833 -14.92989 -14.84970 -14.57721 -14.38324 -14.08262 -14.01307 -13.57661 -13.52958 -13.41195 -13.13660 -12.96044 -12.55134 -12.44793 -12.35267 -12.24372 -12.00396 -11.58168 -11.53332 -11.08291 -10.65956 -10.33781 -10.17360 -9.83238 -9.48913 -8.45721 -6.07895 -0.36094 0.20385 1.28098 1.31173 1.34237 1.40491 1.44177 1.56170 1.80195 2.03218 2.20588 2.64203 2.71760 2.90986 3.10613 3.47012 3.61070 3.83467 3.91232 3.96109 4.07389 4.16283 4.21752 4.29310 4.40755 4.42786 4.45538 4.49331 4.74581 4.81240 4.94010 5.04939 5.17921 5.25487 5.32629 5.37630 5.48396 5.70988 5.88118 6.45839 6.49612 6.52376 6.78360 7.11708 7.29689 7.78459 8.70709 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.037529 B = 0.001838 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.907134 B =15227.894039 C =15547.896182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.960 3.040 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.231 1.231 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.443 3.557 11 O -0.616 6.616 12 C 0.117 3.883 13 N -0.711 5.711 14 C 0.524 3.476 15 O -0.572 6.572 16 C -0.127 4.127 17 C -0.007 4.007 18 C 0.252 3.748 19 N -0.503 5.503 20 C -0.013 4.013 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.083 4.083 24 C -0.103 4.103 25 C -0.020 4.020 26 O -0.222 6.222 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.414 0.586 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.172 0.828 38 H 0.179 0.821 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.832 -17.809 1.543 32.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.780 3.220 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.231 3.769 11 O -0.502 6.502 12 C -0.010 4.010 13 N -0.365 5.365 14 C 0.311 3.689 15 O -0.452 6.452 16 C -0.168 4.168 17 C -0.045 4.045 18 C 0.041 3.959 19 N -0.233 5.233 20 C -0.124 4.124 21 C -0.099 4.099 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.070 4.070 26 O -0.114 6.114 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.252 0.748 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.161 0.839 37 H 0.189 0.811 38 H 0.196 0.804 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 26.687 -17.537 0.932 31.947 hybrid contribution -0.691 0.709 0.579 1.147 sum 25.996 -16.828 1.511 31.004 Atomic orbital electron populations 1.69782 1.08066 1.29460 1.49274 1.26085 0.96437 1.02643 0.95704 0.85432 0.79595 0.76956 0.80052 1.18125 1.19901 1.15466 1.19030 0.81050 0.95238 1.50805 0.91919 1.41934 1.06097 1.07502 1.66273 1.20587 0.90243 0.83815 0.82259 1.90532 1.70863 1.32349 1.56424 1.20906 0.89288 0.85516 1.05338 1.45752 1.07640 1.08629 1.74472 1.20688 0.81272 0.91858 0.75040 1.90703 1.55661 1.47348 1.51501 1.21548 0.94730 0.93250 1.07253 1.19972 0.94247 0.82524 1.07753 1.26664 0.94885 0.96380 0.77992 1.70622 1.18946 1.03904 1.29778 1.20375 1.05410 0.94316 0.92283 1.20685 0.98135 0.89920 1.01114 1.21537 0.98512 0.98161 0.94703 1.21567 0.96574 0.97672 0.94297 1.20366 1.01358 0.88756 1.01649 1.20872 1.04249 0.86910 0.94957 1.84483 1.68113 1.22314 1.36512 0.90936 0.77187 0.87566 0.87586 0.74765 0.86330 0.86744 0.86288 0.86665 0.83890 0.81057 0.80377 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.20 13.96 21.66 0.30 -53.90 16 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 3 Si 0.96 37.69 27.74 68.60 1.90 39.60 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 7 C -0.33 -18.71 10.16 84.04 0.85 -17.86 16 8 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 9 N -0.58 -26.10 5.09 -306.99 -1.56 -27.66 16 10 C 0.44 18.80 7.85 87.66 0.69 19.49 16 11 O -0.62 -31.15 15.24 -3.05 -0.05 -31.20 16 12 C 0.12 3.59 6.15 85.63 0.53 4.12 16 13 N -0.71 -19.77 5.53 -466.78 -2.58 -22.35 16 14 C 0.52 12.98 7.83 87.66 0.69 13.67 16 15 O -0.57 -17.08 15.98 -3.03 -0.05 -17.13 16 16 C -0.13 -2.30 5.68 29.85 0.17 -2.13 16 17 C -0.01 -0.12 5.13 29.85 0.15 0.03 16 18 C 0.25 5.66 7.49 88.39 0.66 6.33 16 19 N -0.50 -12.83 11.34 -296.28 -3.36 -16.19 16 20 C -0.01 -0.30 7.24 39.32 0.28 -0.01 16 21 C -0.08 -1.30 10.10 22.46 0.23 -1.08 16 22 C -0.11 -1.05 10.02 22.25 0.22 -0.83 16 23 C -0.08 -0.72 10.03 22.31 0.22 -0.49 16 24 C -0.10 -1.43 10.06 22.30 0.22 -1.21 16 25 C -0.02 -0.43 7.43 22.88 0.17 -0.26 16 26 O -0.22 -5.15 10.77 -9.87 -0.11 -5.25 16 27 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.39 14.76 5.76 -92.71 -0.53 14.23 16 29 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.41 11.72 7.44 -92.71 -0.69 11.03 16 32 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.12 2.22 8.10 -2.39 -0.02 2.20 16 35 H 0.12 1.92 8.10 -2.39 -0.02 1.90 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -79.05 346.93 -0.10 -79.16 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.16 Total: 35.16 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 5.56 Total: 19.76 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -7.20 Total: -120.09 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.20 Total: -53.58 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 1.90 Total: 39.60 kcal Total: -79.05 -0.10 -79.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.154 kcal (2) G-P(sol) polarization free energy of solvation -79.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds