Wall clock time and date at job start Tue Mar 31 2020 04:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30837 * 126.46729 * 2 1 4 4 N 1.28910 * 109.74196 * 179.97438 * 3 2 1 5 5 C 1.29829 * 109.47725 * 359.97438 * 4 3 2 6 6 N 1.34695 * 126.46513 * 179.97438 * 2 1 3 7 7 C 1.46245 * 128.85350 * 0.13257 * 6 2 1 8 8 C 1.53314 * 108.73338 * 162.85845 * 7 6 2 9 9 H 1.08996 * 109.45520 * 290.31643 * 8 7 6 10 10 C 1.50696 * 109.45619 * 170.35394 * 8 7 6 11 11 O 1.21282 * 119.99990 * 333.86855 * 10 8 7 12 12 N 1.34781 * 120.00172 * 153.59180 * 10 8 7 13 13 C 1.46499 * 119.99923 * 355.92683 * 12 10 8 14 14 C 1.50689 * 109.47254 * 91.09769 * 13 12 10 15 15 H 1.08005 * 120.00309 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00181 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99684 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99915 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47189 * 60.00485 * 18 16 14 20 20 H 1.48505 * 109.46753 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47189 * 300.00040 * 18 16 14 22 22 C 1.46502 * 120.00034 * 175.92718 * 12 10 8 23 23 C 1.52996 * 109.47068 * 95.09236 * 22 12 10 24 24 C 1.47207 * 109.47297 * 182.67687 * 23 22 12 25 25 N 9.80198 * 88.85734 * 186.35210 * 5 1 2 26 26 C 1.53153 * 109.56276 * 50.33497 * 8 7 6 27 27 C 1.50805 * 128.52143 * 180.09666 * 5 4 3 28 28 H 1.09006 * 109.46958 * 270.02548 * 1 2 3 29 29 H 1.08997 * 109.47177 * 30.02374 * 1 2 3 30 30 H 1.09000 * 109.47456 * 150.02964 * 1 2 3 31 31 H 1.09007 * 109.57551 * 43.09824 * 7 6 2 32 32 H 1.08997 * 109.61662 * 282.64738 * 7 6 2 33 33 H 1.09000 * 109.47022 * 211.10205 * 13 12 10 34 34 H 1.09008 * 109.46690 * 331.09982 * 13 12 10 35 35 H 0.97002 * 120.00356 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46869 * 215.09219 * 22 12 10 37 37 H 1.08994 * 109.46891 * 335.09158 * 22 12 10 38 38 H 1.09002 * 109.47341 * 302.67459 * 23 22 12 39 39 H 1.09000 * 109.47799 * 62.67810 * 23 22 12 40 40 H 1.08997 * 109.49309 * 50.50545 * 26 8 7 41 41 H 1.08997 * 109.50003 * 170.57729 * 26 8 7 42 42 H 1.08997 * 109.72754 * 44.44859 * 27 5 4 43 43 H 1.08994 * 109.73155 * 283.76414 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5815 -0.6156 0.0015 6 7 2.3075 -1.0832 0.0005 7 6 1.9369 -2.4979 -0.0015 8 6 3.1550 -3.3255 -0.4279 9 1 3.3620 -3.1494 -1.4835 10 6 2.8689 -4.7889 -0.2098 11 8 2.0668 -5.1309 0.6331 12 7 3.5003 -5.7174 -0.9553 13 6 4.3968 -5.3025 -2.0371 14 6 5.8007 -5.1742 -1.5047 15 1 6.0047 -5.3806 -0.4644 16 6 6.8248 -4.7932 -2.3457 17 7 6.5763 -4.5414 -3.6122 18 14 8.5649 -4.6335 -1.6854 19 1 9.0119 -5.9429 -1.1462 20 1 9.4737 -4.2130 -2.7821 21 1 8.5924 -3.6170 -0.6033 22 6 3.2900 -7.1416 -0.6839 23 6 2.1928 -7.6797 -1.6044 24 6 1.9366 -9.0943 -1.2879 25 7 1.7390 -10.1841 -1.0602 26 6 4.3719 -2.9140 0.4059 27 6 4.8051 -1.4971 0.0043 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.1201 -2.6605 -0.7049 32 1 1.6248 -2.7959 0.9994 33 1 4.3764 -6.0480 -2.8320 34 1 4.0687 -4.3410 -2.4322 35 1 7.2967 -4.2730 -4.2038 36 1 4.2163 -7.6867 -0.8655 37 1 2.9890 -7.2728 0.3554 38 1 1.2795 -7.1032 -1.4568 39 1 2.5139 -7.5921 -2.6424 40 1 4.1100 -2.9295 1.4638 41 1 5.1904 -3.6103 0.2234 42 1 5.5304 -1.1174 0.7240 43 1 5.2483 -1.5147 -0.9913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611014574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:14 Heat of formation + Delta-G solvation = 45.033655 kcal Electronic energy + Delta-G solvation = -27028.469123 eV Core-core repulsion = 23302.254617 eV Total energy + Delta-G solvation = -3726.214507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.30756 -41.17862 -38.23347 -37.60247 -36.81642 -35.07949 -34.62518 -33.01202 -32.02875 -31.21546 -28.99592 -28.25804 -26.51368 -25.20600 -24.50548 -23.74923 -22.26278 -20.90185 -19.71308 -18.81222 -18.32215 -18.21814 -17.59025 -17.29874 -17.01931 -16.28514 -15.98149 -15.80307 -15.68534 -15.14958 -14.88504 -14.82310 -14.67828 -14.34151 -14.14740 -13.87686 -13.59292 -13.56942 -13.39190 -13.34725 -13.13265 -13.08757 -12.84098 -12.67539 -12.53565 -12.51694 -12.13809 -12.00634 -11.85490 -11.75471 -11.55017 -11.32339 -11.04692 -10.70681 -10.42894 -9.96588 -9.50608 -8.11387 -6.21005 0.85620 1.43712 1.49583 1.54935 1.57027 1.64448 1.77001 1.81778 1.84635 2.25163 2.49883 3.14574 3.21429 3.24839 3.41879 3.45905 3.65274 3.70321 3.96516 4.14682 4.15939 4.20778 4.28438 4.30291 4.40548 4.59402 4.64985 4.71284 4.71776 4.88364 4.89460 4.96716 5.00672 5.07785 5.08408 5.11004 5.24021 5.29027 5.39563 5.72756 5.86359 5.95277 6.15622 6.56109 6.58574 6.90238 7.26589 7.50449 7.72255 8.93648 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.005336 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.345095 B = 5246.470502 C = 7719.478018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.180 3.820 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.178 3.822 6 N -0.467 5.467 7 C 0.125 3.875 8 C -0.113 4.113 9 H 0.106 0.894 10 C 0.535 3.465 11 O -0.577 6.577 12 N -0.587 5.587 13 C 0.245 3.755 14 C -0.532 4.532 15 H 0.062 0.938 16 C 0.035 3.965 17 N -0.916 5.916 18 Si 0.931 3.069 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.265 1.265 22 C 0.122 3.878 23 C -0.032 4.032 24 C 0.245 3.755 25 N -0.492 5.492 26 C -0.109 4.109 27 C -0.026 4.026 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 2.291 3.893 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.091 4.091 6 N -0.157 5.157 7 C 0.002 3.998 8 C -0.134 4.134 9 H 0.124 0.876 10 C 0.322 3.678 11 O -0.458 6.458 12 N -0.315 5.315 13 C 0.124 3.876 14 C -0.571 4.571 15 H 0.081 0.919 16 C -0.166 4.166 17 N -0.555 5.555 18 Si 0.758 3.242 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.190 1.190 22 C -0.002 4.002 23 C -0.073 4.073 24 C -0.072 4.072 25 N -0.170 5.170 26 C -0.147 4.147 27 C -0.065 4.065 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.064 1.968 4.475 11.188 hybrid contribution 1.236 -0.739 -0.187 1.452 sum -8.828 1.229 4.288 9.891 Atomic orbital electron populations 1.20449 0.80367 1.05952 1.05500 1.25475 0.98726 0.82097 1.02471 1.74337 0.96479 1.25611 1.22272 1.73923 1.13057 1.09628 1.20860 1.25083 0.88400 0.92096 1.03472 1.46099 1.06444 1.09192 1.53986 1.21964 0.97877 0.74216 1.05704 1.21482 0.96034 0.92084 1.03802 0.87582 1.20039 0.79757 0.87645 0.80326 1.90647 1.36496 1.82708 1.35956 1.48051 1.44275 1.05246 1.33977 1.19291 0.87154 0.96430 0.84676 1.21583 0.93227 1.46170 0.96112 0.91941 1.25354 1.01354 0.95096 0.94802 1.69949 1.33804 1.46809 1.04925 0.86021 0.81393 0.78676 0.78132 1.20373 1.22177 1.18955 1.21222 0.98373 0.81157 0.99490 1.19732 1.02294 0.81917 1.03353 1.29073 0.91612 0.94858 0.91671 1.81000 1.10782 1.14481 1.10759 1.21647 0.97923 0.96202 0.98920 1.20237 0.90391 0.91029 1.04851 0.87946 0.87978 0.88119 0.86232 0.87428 0.94632 0.94432 0.92715 0.89535 0.89995 0.85742 0.85292 0.90896 0.87860 0.87274 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.29 71.23 0.73 -0.22 16 2 C 0.18 4.78 8.07 138.14 1.11 5.90 16 3 N -0.35 -11.97 12.23 -50.47 -0.62 -12.58 16 4 N -0.34 -12.36 12.21 -50.28 -0.61 -12.97 16 5 C 0.18 5.62 7.75 138.14 1.07 6.69 16 6 N -0.47 -12.45 3.11 -504.70 -1.57 -14.02 16 7 C 0.12 2.74 5.77 86.53 0.50 3.24 16 8 C -0.11 -2.94 1.93 -11.38 -0.02 -2.96 16 9 H 0.11 3.02 5.90 -2.39 -0.01 3.00 16 10 C 0.53 15.01 6.75 87.65 0.59 15.60 16 11 O -0.58 -17.64 15.46 -3.04 -0.05 -17.68 16 12 N -0.59 -16.76 2.46 -826.18 -2.03 -18.79 16 13 C 0.24 8.55 4.98 85.63 0.43 8.98 16 14 C -0.53 -21.58 7.65 25.60 0.20 -21.39 16 15 H 0.06 2.54 7.23 -2.91 -0.02 2.52 16 16 C 0.04 1.56 5.46 84.66 0.46 2.02 16 17 N -0.92 -43.91 13.29 21.45 0.28 -43.63 16 18 Si 0.93 36.75 29.54 68.60 2.03 38.78 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.30 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C 0.12 3.01 5.39 86.38 0.47 3.47 16 23 C -0.03 -0.61 6.02 28.79 0.17 -0.44 16 24 C 0.25 5.84 15.42 89.50 1.38 7.22 16 25 N -0.49 -14.60 18.50 19.95 0.37 -14.23 16 26 C -0.11 -2.96 5.24 30.82 0.16 -2.80 16 27 C -0.03 -0.72 6.34 30.05 0.19 -0.53 16 28 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 1.03 7.75 -2.39 -0.02 1.02 16 31 H 0.12 2.05 7.85 -2.38 -0.02 2.03 16 32 H 0.11 2.33 7.52 -2.39 -0.02 2.31 16 33 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.04 1.38 5.85 -2.38 -0.01 1.37 16 35 H 0.26 12.51 8.31 -92.71 -0.77 11.74 16 36 H 0.09 2.21 8.11 -2.39 -0.02 2.19 16 37 H 0.08 2.09 7.33 -2.39 -0.02 2.07 16 38 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 41 H 0.10 3.19 5.54 -2.39 -0.01 3.18 16 42 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -60.80 361.61 6.28 -54.52 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.04 Total: 15.81 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 7.44 Total: 24.79 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -4.18 Total: -116.22 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -60.80 6.28 -54.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611014574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.553 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds