Wall clock time and date at job start Tue Mar 31 2020 04:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00074 * 2 1 4 4 C 1.46903 * 110.99728 * 123.95637 * 2 1 3 5 5 C 1.52996 * 109.47063 * 66.04544 * 4 2 1 6 6 N 1.46905 * 109.46974 * 184.81906 * 5 4 2 7 7 C 1.47999 * 111.00177 * 184.26737 * 6 5 4 8 8 C 1.54300 * 107.05213 * 145.62463 * 7 6 5 9 9 C 1.53285 * 104.73810 * 357.91708 * 8 7 6 10 10 C 1.52562 * 116.30701 * 209.99155 * 9 8 7 11 11 N 1.47850 * 85.65885 * 218.78209 * 10 9 8 12 12 S 1.65601 * 134.36476 * 203.59978 * 11 10 9 13 13 O 1.42107 * 106.39706 * 23.57283 * 12 11 10 14 14 O 1.42099 * 106.40259 * 156.48762 * 12 11 10 15 15 C 1.76193 * 107.21985 * 270.03329 * 12 11 10 16 16 H 1.07999 * 120.00366 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99951 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99651 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 120.00167 * 359.97438 * 17 15 12 20 20 H 1.48507 * 109.46901 * 90.00239 * 19 17 15 21 21 H 1.48497 * 109.47377 * 210.00389 * 19 17 15 22 22 H 1.48503 * 109.47406 * 330.01023 * 19 17 15 23 23 C 1.47856 * 91.27401 * 23.62298 * 11 10 9 24 24 C 1.48791 * 111.00200 * 301.94993 * 6 5 4 25 25 H 1.09005 * 109.47029 * 296.04484 * 1 2 3 26 26 H 1.09004 * 109.47144 * 56.04159 * 1 2 3 27 27 H 1.09000 * 109.47352 * 176.04439 * 1 2 3 28 28 H 1.09000 * 109.46691 * 183.95592 * 3 2 1 29 29 H 1.09001 * 109.47039 * 303.95838 * 3 2 1 30 30 H 1.08998 * 109.46969 * 63.95269 * 3 2 1 31 31 H 1.08996 * 109.46855 * 306.03884 * 4 2 1 32 32 H 1.08998 * 109.46536 * 186.04401 * 4 2 1 33 33 H 1.09004 * 109.47488 * 64.82498 * 5 4 2 34 34 H 1.08997 * 109.47364 * 304.81448 * 5 4 2 35 35 H 1.09001 * 109.92132 * 26.27352 * 7 6 5 36 36 H 1.09006 * 109.92289 * 264.97101 * 7 6 5 37 37 H 1.09003 * 110.38997 * 116.73016 * 8 7 6 38 38 H 1.09003 * 110.38457 * 239.10247 * 8 7 6 39 39 H 1.08999 * 113.84124 * 332.96736 * 10 9 8 40 40 H 1.08998 * 113.84376 * 104.59966 * 10 9 8 41 41 H 0.97002 * 119.99799 * 179.97438 * 18 17 15 42 42 H 1.09002 * 113.84182 * 222.19115 * 23 11 10 43 43 H 1.08997 * 113.95816 * 90.57657 * 23 11 10 44 44 H 1.09002 * 110.68746 * 320.06918 * 24 6 5 45 45 H 1.09003 * 110.69450 * 83.08847 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6314 -2.2426 0.9703 6 7 2.0563 -2.9897 2.1617 7 6 1.8125 -4.4398 1.9933 8 6 2.9526 -5.1782 2.7252 9 6 3.8610 -4.0638 3.2567 10 6 5.3431 -4.4025 3.3837 11 7 5.3005 -3.6156 4.6347 12 16 6.4321 -2.8052 5.5320 13 8 7.4958 -2.4882 4.6446 14 8 5.7249 -1.8248 6.2789 15 6 7.0850 -3.9479 6.7033 16 1 6.7232 -4.9653 6.7248 17 6 8.0572 -3.5431 7.5933 18 7 8.5442 -4.3960 8.4680 19 14 8.6826 -1.7833 7.5568 20 1 7.8559 -0.9453 8.4622 21 1 10.0973 -1.7512 8.0069 22 1 8.5915 -1.2542 6.1722 23 6 3.8451 -3.8410 4.7658 24 6 3.5191 -2.8423 2.3900 25 1 -0.3633 0.4512 0.9234 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3431 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5612 -0.3872 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 2.1355 -2.6438 0.0910 34 1 0.5528 -2.3392 0.8464 35 1 1.8227 -4.6976 0.9343 36 1 0.8527 -4.7087 2.4345 37 1 2.5544 -5.7691 3.5501 38 1 3.5000 -5.8152 2.0303 39 1 5.5410 -5.4634 3.5371 40 1 5.9646 -3.9596 2.6056 41 1 9.2284 -4.1113 9.0938 42 1 3.2883 -2.9563 5.0747 43 1 3.5849 -4.7302 5.3398 44 1 4.0617 -2.8764 1.4452 45 1 3.7345 -1.9162 2.9229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278256214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:08 Heat of formation + Delta-G solvation = -51.976769 kcal Electronic energy + Delta-G solvation = -25596.154963 eV Core-core repulsion = 21968.884969 eV Total energy + Delta-G solvation = -3627.269994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.156 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.45683 -38.94651 -37.68455 -37.40523 -36.51281 -35.22302 -32.87534 -29.72148 -29.19124 -28.57305 -28.44128 -27.25319 -26.17197 -24.21711 -22.25672 -21.52298 -20.69605 -19.84929 -19.19350 -18.58709 -17.35823 -17.08590 -16.86776 -16.60513 -16.17802 -16.05886 -15.84673 -15.38129 -15.31710 -14.98993 -14.96670 -14.58536 -14.42884 -13.90831 -13.78230 -13.48340 -13.25408 -13.22980 -13.13377 -12.89116 -12.75513 -12.69646 -12.61620 -12.59170 -12.44945 -12.19686 -12.01471 -11.85123 -11.67267 -11.41504 -11.35622 -11.24502 -11.17789 -9.84351 -9.39237 -9.31239 -9.00999 -7.56005 0.06092 0.99890 1.09547 1.16765 1.84958 2.36260 2.39421 2.71579 3.18345 3.33734 3.53156 3.59026 3.71819 3.86583 3.92632 4.08027 4.15789 4.29623 4.37870 4.46964 4.49169 4.58703 4.61261 4.64297 4.66832 4.68221 4.71323 4.78453 4.82685 4.91579 4.96844 4.98346 4.99309 5.04207 5.09821 5.25330 5.30218 5.32097 5.36958 5.68060 5.85632 5.98212 5.99447 6.03147 6.20736 6.49687 8.17264 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.003569 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.328413 B = 7843.087067 C = 8880.167043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.557 5.557 3 C 0.023 3.977 4 C 0.055 3.945 5 C 0.060 3.940 6 N -0.528 5.528 7 C 0.041 3.959 8 C -0.110 4.110 9 C -0.079 4.079 10 C 0.133 3.867 11 N -1.043 6.043 12 S 2.709 3.291 13 O -1.026 7.026 14 O -1.029 7.029 15 C -1.043 5.043 16 H 0.102 0.898 17 C 0.106 3.894 18 N -0.855 5.855 19 Si 0.824 3.176 20 H -0.239 1.239 21 H -0.215 1.215 22 H -0.231 1.231 23 C 0.139 3.861 24 C 0.058 3.942 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.023 0.977 31 H 0.032 0.968 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.291 0.709 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 1.499 -17.730 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.282 5.282 3 C -0.125 4.125 4 C -0.073 4.073 5 C -0.069 4.069 6 N -0.253 5.253 7 C -0.086 4.086 8 C -0.149 4.149 9 C -0.082 4.082 10 C 0.008 3.992 11 N -0.884 5.884 12 S 2.812 3.188 13 O -1.017 7.017 14 O -1.020 7.020 15 C -1.175 5.175 16 H 0.121 0.879 17 C -0.110 4.110 18 N -0.485 5.485 19 Si 0.641 3.359 20 H -0.163 1.163 21 H -0.137 1.137 22 H -0.153 1.153 23 C 0.014 3.986 24 C -0.070 4.070 25 H 0.041 0.959 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.283 2.457 -17.556 24.071 hybrid contribution 1.032 0.136 1.148 1.550 sum -15.251 2.593 -16.408 22.551 Atomic orbital electron populations 1.22501 0.86351 1.03021 1.00840 1.61987 1.09151 1.14403 1.42652 1.22421 1.00842 0.88277 1.00991 1.22090 0.99694 0.94048 0.91485 1.22189 1.01540 0.92370 0.90754 1.64783 1.14364 1.09426 1.36753 1.22963 0.99763 0.85995 0.99909 1.22289 0.95187 0.96255 1.01188 1.22254 0.94388 0.97265 0.94306 1.22857 0.95865 0.96791 0.83655 1.60147 1.20730 1.69201 1.38277 1.00081 0.71809 0.73776 0.73094 1.93409 1.55649 1.85065 1.67528 1.93355 1.74576 1.61140 1.72908 1.31212 1.35223 1.15512 1.35555 0.87938 1.25209 0.92975 1.00777 0.92072 1.70016 1.25130 1.36737 1.16649 0.87502 0.83488 0.81107 0.83772 1.16258 1.13717 1.15309 1.22781 0.77684 1.01910 0.96215 1.22780 0.88943 0.97072 0.98163 0.95858 0.90264 0.90426 0.91630 0.89833 0.95872 0.95010 0.91851 0.93681 0.89452 0.92250 0.89171 0.89017 0.88735 0.87952 0.89874 0.89805 0.90607 0.88425 0.92034 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.33 127.69 1.19 1.48 16 2 N -0.56 -10.10 5.02 -948.83 -4.76 -14.86 16 3 C 0.02 0.37 9.57 127.69 1.22 1.60 16 4 C 0.06 1.12 4.65 86.30 0.40 1.53 16 5 C 0.06 1.06 4.87 86.30 0.42 1.49 16 6 N -0.53 -10.65 5.35 -884.09 -4.73 -15.38 16 7 C 0.04 0.62 6.73 86.53 0.58 1.20 16 8 C -0.11 -1.75 6.40 31.13 0.20 -1.55 16 9 C -0.08 -1.89 1.08 -52.10 -0.06 -1.94 16 10 C 0.13 3.87 8.30 85.97 0.71 4.59 16 11 N -1.04 -40.90 4.12 -551.34 -2.27 -43.17 16 12 S 2.71 141.26 4.73 -56.49 -0.27 140.99 16 13 O -1.03 -56.82 15.99 -128.00 -2.05 -58.86 16 14 O -1.03 -57.44 16.80 -128.00 -2.15 -59.59 16 15 C -1.04 -61.15 10.29 67.73 0.70 -60.45 16 16 H 0.10 6.13 8.06 -2.91 -0.02 6.11 16 17 C 0.11 6.31 5.47 84.65 0.46 6.78 16 18 N -0.85 -50.90 13.96 21.45 0.30 -50.61 16 19 Si 0.82 42.49 26.54 68.60 1.82 44.31 16 20 H -0.24 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.22 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.23 -12.24 5.61 99.48 0.56 -11.69 16 23 C 0.14 4.26 8.22 85.97 0.71 4.97 16 24 C 0.06 1.39 4.68 86.15 0.40 1.80 16 25 H 0.02 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 27 H 0.08 0.97 6.37 -2.39 -0.02 0.95 16 28 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 29 H 0.08 1.08 8.12 -2.39 -0.02 1.07 16 30 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.06 1.43 7.11 -2.39 -0.02 1.41 16 33 H 0.04 0.80 7.98 -2.39 -0.02 0.78 16 34 H 0.09 1.37 6.34 -2.39 -0.02 1.35 16 35 H 0.06 0.75 7.67 -2.39 -0.02 0.74 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.09 1.30 7.87 -2.39 -0.02 1.28 16 38 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 39 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 41 H 0.29 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.08 2.43 8.12 -2.39 -0.02 2.41 16 43 H 0.10 2.62 8.00 -2.39 -0.02 2.60 16 44 H 0.06 1.36 8.00 -2.39 -0.02 1.34 16 45 H 0.06 1.80 7.76 -2.39 -0.02 1.79 16 Total: -1.00 -73.99 364.79 -6.37 -80.36 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.80 Total: 15.34 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 6.94 Total: -38.52 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -11.47 Total: -124.02 kcal Atomic # 8 Polarization: -114.26 SS G_CDS: -4.20 Total: -118.46 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.82 Total: 44.31 kcal Atomic # 16 Polarization: 141.26 SS G_CDS: -0.27 Total: 140.99 kcal Total: -73.99 -6.37 -80.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278256214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.383 kcal (2) G-P(sol) polarization free energy of solvation -73.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds