Wall clock time and date at job start Tue Mar 31 2020 04:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48500 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46787 * 299.99496 * 3 2 1 6 6 H 1.48495 * 109.47357 * 59.99611 * 3 2 1 7 7 C 1.38752 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99619 * 179.97438 * 7 2 1 9 9 O 1.34918 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.34314 * 116.99858 * 179.97438 * 9 7 2 11 11 O 1.21212 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00025 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46883 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00540 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99917 * 180.02562 * 14 13 12 17 17 C 1.47059 * 121.06472 * 359.97040 * 16 14 13 18 18 C 1.50728 * 109.02199 * 221.99332 * 17 16 14 19 19 O 1.21292 * 119.60252 * 150.94507 * 18 17 16 20 20 N 1.34647 * 120.79379 * 330.92899 * 18 17 16 21 21 C 1.39909 * 120.73135 * 2.37818 * 20 18 17 22 22 C 1.38574 * 120.77430 * 193.92880 * 21 20 18 23 23 C 1.38266 * 119.85420 * 180.46189 * 22 21 20 24 24 C 1.38305 * 120.36585 * 0.02562 * 23 22 21 25 25 C 1.38348 * 120.18263 * 359.92484 * 24 23 22 26 26 C 1.38328 * 119.73296 * 359.97438 * 25 24 23 27 27 H 0.97009 * 119.99207 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47379 * 59.99355 * 12 10 9 29 29 H 1.08999 * 109.46747 * 299.99428 * 12 10 9 30 30 H 1.09002 * 109.46705 * 60.00143 * 13 12 10 31 31 H 1.08999 * 109.47082 * 299.99550 * 13 12 10 32 32 H 1.09000 * 109.54442 * 341.85781 * 17 16 14 33 33 H 1.09006 * 109.54242 * 102.03821 * 17 16 14 34 34 H 0.97001 * 119.63608 * 182.39576 * 20 18 17 35 35 H 1.08005 * 120.07622 * 0.48265 * 22 21 20 36 36 H 1.07999 * 119.81974 * 180.02562 * 23 22 21 37 37 H 1.08001 * 119.90836 * 179.64806 * 24 23 22 38 38 H 1.08003 * 120.13394 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3462 0.0006 5 1 1.8899 2.3963 -1.2126 6 1 1.8898 2.3964 1.2124 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3334 -2.3701 0.0005 10 6 2.0649 -3.4966 0.0005 11 8 3.2753 -3.4332 0.0001 12 6 1.3806 -4.8393 0.0011 13 6 2.4343 -5.9487 0.0004 14 6 1.7500 -7.2913 0.0016 15 8 0.5388 -7.3548 0.0034 16 7 2.4840 -8.4217 0.0017 17 6 3.9537 -8.3722 0.0000 18 6 4.4793 -9.4149 -0.9531 19 8 5.5400 -9.2345 -1.5131 20 7 3.7856 -10.5443 -1.1902 21 6 2.5369 -10.7545 -0.5953 22 6 1.9524 -12.0110 -0.5988 23 6 0.7132 -12.1952 -0.0137 24 6 0.0530 -11.1321 0.5750 25 6 0.6293 -9.8744 0.5842 26 6 1.8697 -9.6839 0.0023 27 1 -0.4849 0.8402 -0.0004 28 1 0.7574 -4.9299 -0.8886 29 1 0.7583 -4.9295 0.8914 30 1 3.0577 -5.8582 0.8899 31 1 3.0563 -5.8583 -0.8901 32 1 4.2849 -7.3846 -0.3211 33 1 4.3265 -8.5732 1.0044 34 1 4.1559 -11.2198 -1.7797 35 1 2.4637 -12.8446 -1.0572 36 1 0.2584 -13.1748 -0.0163 37 1 -0.9172 -11.2832 1.0249 38 1 0.1128 -9.0446 1.0437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032881113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:42 Heat of formation + Delta-G solvation = -110.880570 kcal Electronic energy + Delta-G solvation = -25607.629172 eV Core-core repulsion = 21608.809209 eV Total energy + Delta-G solvation = -3998.819962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85958 -39.82668 -39.07692 -38.72312 -36.13611 -35.39642 -35.21387 -32.79672 -32.13269 -30.73875 -29.99882 -28.16744 -26.43931 -24.85257 -23.43310 -23.24347 -21.00078 -19.90100 -19.27195 -18.65590 -18.01399 -17.77998 -17.63643 -16.89806 -16.35563 -15.85364 -15.54000 -15.43874 -14.87606 -14.73629 -14.41898 -14.31699 -14.25708 -14.17006 -13.56870 -13.47483 -13.23141 -12.79769 -12.46133 -12.19364 -11.92879 -11.67092 -11.55080 -11.30626 -11.16010 -11.01221 -10.96699 -10.40919 -10.39466 -10.35927 -9.91474 -9.79772 -9.06873 -8.85326 -8.58618 -8.12163 -6.41131 -4.09368 0.73895 0.95132 1.92163 2.25277 2.35822 2.57292 3.09622 3.19340 3.26793 3.42309 3.51465 3.72823 3.87062 4.13707 4.35963 4.54309 4.62624 4.74259 4.83019 4.90085 5.01871 5.02511 5.09862 5.14665 5.23646 5.44589 5.62490 5.67708 5.82441 6.06349 6.08990 6.17927 6.21769 6.24598 6.44502 6.71379 6.72653 6.76802 7.39458 7.45498 7.74598 7.94746 8.68947 9.07486 9.84335 10.76803 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.002648 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.928738 B =10570.373780 C =11608.467014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.383 4.383 8 H 0.097 0.903 9 O -0.212 6.212 10 C 0.397 3.603 11 O -0.562 6.562 12 C -0.088 4.088 13 C -0.124 4.124 14 C 0.524 3.476 15 O -0.506 6.506 16 N -0.565 5.565 17 C 0.089 3.911 18 C 0.513 3.487 19 O -0.512 6.512 20 N -0.657 5.657 21 C 0.126 3.874 22 C -0.135 4.135 23 C -0.105 4.105 24 C -0.119 4.119 25 C -0.091 4.091 26 C 0.116 3.884 27 H 0.269 0.731 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.414 0.586 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -25.145 1.313 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.114 0.886 9 O -0.119 6.119 10 C 0.244 3.756 11 O -0.460 6.460 12 C -0.127 4.127 13 C -0.164 4.164 14 C 0.315 3.685 15 O -0.379 6.379 16 N -0.293 5.293 17 C -0.036 4.036 18 C 0.300 3.700 19 O -0.386 6.386 20 N -0.303 5.303 21 C 0.028 3.972 22 C -0.156 4.156 23 C -0.124 4.124 24 C -0.139 4.139 25 C -0.112 4.112 26 C 0.021 3.979 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.252 0.748 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.636 -24.581 1.098 24.747 hybrid contribution 0.622 0.379 -0.308 0.790 sum 3.258 -24.203 0.790 24.434 Atomic orbital electron populations 1.70014 1.06014 1.27599 1.46427 1.25356 0.95818 0.98916 0.96198 0.85616 0.79445 0.80076 0.78125 1.18947 1.20172 1.20171 1.21281 0.92391 0.79828 1.52405 0.88569 1.83878 1.39370 1.13401 1.75228 1.23043 0.86582 0.87301 0.78697 1.90551 1.15662 1.88245 1.51534 1.20760 0.97404 0.88443 1.06076 1.21492 0.99556 0.89022 1.06333 1.21110 0.87512 0.85281 0.74605 1.90710 1.13611 1.86686 1.46904 1.45775 1.06259 1.04585 1.72697 1.22198 0.79158 1.01260 1.00972 1.20875 0.84284 0.82258 0.82617 1.90851 1.21872 1.77075 1.48765 1.43557 1.17911 1.21315 1.47478 1.17600 0.86772 0.94188 0.98614 1.20573 0.97125 0.94201 1.03729 1.20982 0.94199 0.99392 0.97852 1.21132 1.00419 0.91995 1.00340 1.21196 0.93648 0.98579 0.97729 1.17557 0.95152 0.83362 1.01802 0.92099 0.88248 0.88162 0.87294 0.87483 0.84382 0.86731 0.74772 0.85047 0.85263 0.85106 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.38 -11.28 9.64 30.92 0.30 -10.99 16 8 H 0.10 2.84 6.86 -52.48 -0.36 2.48 16 9 O -0.21 -6.05 9.75 -20.71 -0.20 -6.25 16 10 C 0.40 9.44 7.91 36.01 0.28 9.73 16 11 O -0.56 -14.21 15.22 -19.05 -0.29 -14.50 16 12 C -0.09 -1.56 5.10 -27.88 -0.14 -1.70 16 13 C -0.12 -1.72 3.43 -27.88 -0.10 -1.81 16 14 C 0.52 6.94 7.58 -10.99 -0.08 6.85 16 15 O -0.51 -7.92 13.47 5.55 0.07 -7.85 16 16 N -0.56 -6.28 3.01 -114.10 -0.34 -6.63 16 17 C 0.09 0.82 6.38 -4.88 -0.03 0.79 16 18 C 0.51 5.41 7.90 -11.03 -0.09 5.32 16 19 O -0.51 -6.98 17.91 5.55 0.10 -6.88 16 20 N -0.66 -5.70 5.37 -9.78 -0.05 -5.75 16 21 C 0.13 1.14 6.58 -83.54 -0.55 0.59 16 22 C -0.14 -0.94 9.93 -39.45 -0.39 -1.33 16 23 C -0.10 -0.70 10.03 -39.55 -0.40 -1.10 16 24 C -0.12 -0.96 10.04 -39.52 -0.40 -1.36 16 25 C -0.09 -0.96 8.83 -39.51 -0.35 -1.31 16 26 C 0.12 1.26 6.11 -83.41 -0.51 0.75 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 28 H 0.10 1.71 8.10 -51.93 -0.42 1.29 16 29 H 0.10 1.68 8.10 -51.93 -0.42 1.26 16 30 H 0.11 1.37 8.09 -51.93 -0.42 0.95 16 31 H 0.11 1.43 7.50 -51.93 -0.39 1.04 16 32 H 0.14 1.21 6.24 -51.93 -0.32 0.89 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.41 2.75 8.82 -40.82 -0.36 2.39 16 35 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.79 6.11 -52.48 -0.32 1.47 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -36.49 334.66 -6.32 -42.81 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.84 Total: 2.92 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.55 Total: 5.51 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.36 Total: -37.05 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.32 Total: -35.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.49 -6.32 -42.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032881113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.070 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds