Wall clock time and date at job start Tue Mar 31 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48500 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46787 * 299.99496 * 3 2 1 6 6 H 1.48495 * 109.47357 * 59.99611 * 3 2 1 7 7 C 1.38752 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99619 * 179.97438 * 7 2 1 9 9 O 1.34918 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.34314 * 116.99858 * 179.97438 * 9 7 2 11 11 O 1.21212 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00025 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46883 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00540 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99917 * 180.02562 * 14 13 12 17 17 C 1.47059 * 121.06472 * 359.97040 * 16 14 13 18 18 C 1.50728 * 109.02199 * 221.99332 * 17 16 14 19 19 O 1.21292 * 119.60252 * 150.94507 * 18 17 16 20 20 N 1.34647 * 120.79379 * 330.92899 * 18 17 16 21 21 C 1.39909 * 120.73135 * 2.37818 * 20 18 17 22 22 C 1.38574 * 120.77430 * 193.92880 * 21 20 18 23 23 C 1.38266 * 119.85420 * 180.46189 * 22 21 20 24 24 C 1.38305 * 120.36585 * 0.02562 * 23 22 21 25 25 C 1.38348 * 120.18263 * 359.92484 * 24 23 22 26 26 C 1.38328 * 119.73296 * 359.97438 * 25 24 23 27 27 H 0.97009 * 119.99207 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47379 * 59.99355 * 12 10 9 29 29 H 1.08999 * 109.46747 * 299.99428 * 12 10 9 30 30 H 1.09002 * 109.46705 * 60.00143 * 13 12 10 31 31 H 1.08999 * 109.47082 * 299.99550 * 13 12 10 32 32 H 1.09000 * 109.54442 * 341.85781 * 17 16 14 33 33 H 1.09006 * 109.54242 * 102.03821 * 17 16 14 34 34 H 0.97001 * 119.63608 * 182.39576 * 20 18 17 35 35 H 1.08005 * 120.07622 * 0.48265 * 22 21 20 36 36 H 1.07999 * 119.81974 * 180.02562 * 23 22 21 37 37 H 1.08001 * 119.90836 * 179.64806 * 24 23 22 38 38 H 1.08003 * 120.13394 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3462 0.0006 5 1 1.8899 2.3963 -1.2126 6 1 1.8898 2.3964 1.2124 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3334 -2.3701 0.0005 10 6 2.0649 -3.4966 0.0005 11 8 3.2753 -3.4332 0.0001 12 6 1.3806 -4.8393 0.0011 13 6 2.4343 -5.9487 0.0004 14 6 1.7500 -7.2913 0.0016 15 8 0.5388 -7.3548 0.0034 16 7 2.4840 -8.4217 0.0017 17 6 3.9537 -8.3722 0.0000 18 6 4.4793 -9.4149 -0.9531 19 8 5.5400 -9.2345 -1.5131 20 7 3.7856 -10.5443 -1.1902 21 6 2.5369 -10.7545 -0.5953 22 6 1.9524 -12.0110 -0.5988 23 6 0.7132 -12.1952 -0.0137 24 6 0.0530 -11.1321 0.5750 25 6 0.6293 -9.8744 0.5842 26 6 1.8697 -9.6839 0.0023 27 1 -0.4849 0.8402 -0.0004 28 1 0.7574 -4.9299 -0.8886 29 1 0.7583 -4.9295 0.8914 30 1 3.0577 -5.8582 0.8899 31 1 3.0563 -5.8583 -0.8901 32 1 4.2849 -7.3846 -0.3211 33 1 4.3265 -8.5732 1.0044 34 1 4.1559 -11.2198 -1.7797 35 1 2.4637 -12.8446 -1.0572 36 1 0.2584 -13.1748 -0.0163 37 1 -0.9172 -11.2832 1.0249 38 1 0.1128 -9.0446 1.0437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032881113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:41 Heat of formation + Delta-G solvation = -135.890848 kcal Electronic energy + Delta-G solvation = -25608.713699 eV Core-core repulsion = 21608.809209 eV Total energy + Delta-G solvation = -3999.904489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.68002 -41.14179 -40.59083 -39.63876 -37.40050 -36.98088 -36.01975 -34.33772 -34.09624 -31.50461 -30.69912 -29.11294 -28.02739 -26.49238 -24.36651 -23.93801 -22.18456 -21.32607 -20.15746 -19.88730 -19.43885 -19.03229 -18.67511 -18.05540 -17.68648 -17.14323 -16.74621 -16.33170 -16.23885 -16.09486 -15.98661 -15.42091 -15.29815 -14.94670 -14.59598 -14.50589 -14.24581 -14.12230 -13.82379 -13.54786 -13.09666 -13.07921 -12.82543 -12.56832 -12.43258 -12.24885 -12.15547 -11.95936 -11.92429 -11.82337 -11.21912 -11.06185 -10.86802 -10.70088 -9.54264 -8.86204 -8.53767 -6.33861 0.02407 0.28574 1.11117 1.29820 1.32135 1.34956 1.47203 1.54651 1.63806 1.83706 2.12558 2.67416 2.78623 2.97808 2.99104 3.31841 3.59977 3.76767 3.84124 4.00230 4.08767 4.18816 4.33101 4.38451 4.42291 4.45455 4.71685 4.74656 4.80892 4.87417 4.97198 5.18621 5.20138 5.41634 5.50064 5.58509 5.74327 5.83297 5.85684 6.03440 6.65006 6.71688 6.75306 6.91607 7.76585 8.67410 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.002648 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.928738 B =10570.373780 C =11608.467014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.086 0.914 9 O -0.248 6.248 10 C 0.399 3.601 11 O -0.576 6.576 12 C -0.078 4.078 13 C -0.116 4.116 14 C 0.530 3.470 15 O -0.536 6.536 16 N -0.559 5.559 17 C 0.086 3.914 18 C 0.514 3.486 19 O -0.549 6.549 20 N -0.647 5.647 21 C 0.117 3.883 22 C -0.125 4.125 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.111 4.111 26 C 0.089 3.911 27 H 0.278 0.722 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.424 0.576 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -26.979 1.368 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.207 4.207 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.103 0.897 9 O -0.156 6.156 10 C 0.247 3.753 11 O -0.474 6.474 12 C -0.116 4.116 13 C -0.156 4.156 14 C 0.321 3.679 15 O -0.412 6.412 16 N -0.286 5.286 17 C -0.039 4.039 18 C 0.301 3.699 19 O -0.425 6.425 20 N -0.292 5.292 21 C 0.020 3.980 22 C -0.146 4.146 23 C -0.115 4.115 24 C -0.140 4.140 25 C -0.132 4.132 26 C -0.006 4.006 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.264 0.736 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.166 0.834 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.065 -26.488 1.156 26.689 hybrid contribution 0.447 0.715 -0.313 0.899 sum 3.512 -25.773 0.843 26.025 Atomic orbital electron populations 1.70102 1.07750 1.29296 1.47084 1.26583 0.96875 1.02515 0.94748 0.84550 0.77864 0.74690 0.79148 1.18620 1.18619 1.18491 1.21494 0.92244 0.81086 1.54698 0.89664 1.83904 1.40572 1.14397 1.76715 1.24183 0.86647 0.88123 0.76326 1.90521 1.16630 1.88671 1.51619 1.20795 0.98189 0.85912 1.06671 1.21403 0.98518 0.88266 1.07405 1.20800 0.87043 0.85535 0.74554 1.90705 1.14715 1.87106 1.48673 1.45636 1.06842 1.04360 1.71802 1.22384 0.78016 1.01244 1.02234 1.21001 0.83826 0.82746 0.82278 1.90838 1.23473 1.77961 1.50260 1.43455 1.17621 1.21015 1.47149 1.17740 0.86752 0.94596 0.98924 1.20998 0.97049 0.94056 1.02499 1.21396 0.93740 1.00306 0.96037 1.21409 1.01140 0.91387 1.00060 1.21166 0.93958 0.99233 0.98836 1.17784 0.95865 0.83472 1.03450 0.91242 0.87811 0.87231 0.85857 0.86918 0.84098 0.84100 0.73583 0.81899 0.81901 0.83401 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.15 13.67 21.62 0.30 -53.86 16 2 C -0.01 -0.42 5.49 84.87 0.47 0.05 16 3 Si 1.02 43.57 29.55 68.60 2.03 45.59 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.42 -25.45 9.64 67.94 0.66 -24.79 16 8 H 0.09 5.19 6.86 -2.91 -0.02 5.17 16 9 O -0.25 -14.62 9.75 14.86 0.14 -14.48 16 10 C 0.40 19.45 7.91 71.24 0.56 20.01 16 11 O -0.58 -29.65 15.22 20.77 0.32 -29.33 16 12 C -0.08 -2.76 5.10 29.85 0.15 -2.61 16 13 C -0.12 -3.18 3.43 29.85 0.10 -3.08 16 14 C 0.53 14.00 7.58 87.66 0.66 14.66 16 15 O -0.54 -17.09 13.47 -3.07 -0.04 -17.13 16 16 N -0.56 -12.13 3.01 -633.30 -1.91 -14.04 16 17 C 0.09 1.49 6.38 85.54 0.55 2.04 16 18 C 0.51 10.37 7.90 87.69 0.69 11.06 16 19 O -0.55 -14.74 17.91 -3.07 -0.05 -14.79 16 20 N -0.65 -10.13 5.37 -303.32 -1.63 -11.76 16 21 C 0.12 1.88 6.58 38.26 0.25 2.13 16 22 C -0.13 -1.30 9.93 22.36 0.22 -1.08 16 23 C -0.10 -0.93 10.03 22.29 0.22 -0.71 16 24 C -0.12 -1.70 10.04 22.31 0.22 -1.48 16 25 C -0.11 -2.30 8.83 22.32 0.20 -2.10 16 26 C 0.09 1.84 6.11 38.12 0.23 2.08 16 27 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 28 H 0.10 3.64 8.10 -2.39 -0.02 3.62 16 29 H 0.11 3.73 8.10 -2.39 -0.02 3.71 16 30 H 0.12 3.00 8.09 -2.39 -0.02 2.98 16 31 H 0.11 2.97 7.50 -2.39 -0.02 2.95 16 32 H 0.14 2.38 6.24 -2.39 -0.01 2.36 16 33 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.42 4.79 8.82 -92.71 -0.82 3.98 16 35 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.13 3.20 6.11 -2.91 -0.02 3.18 16 Total: -1.00 -81.50 334.66 4.66 -76.84 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.31 Total: 16.78 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.19 Total: 16.18 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -3.24 Total: -79.66 kcal Atomic # 8 Polarization: -76.10 SS G_CDS: 0.36 Total: -75.74 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -81.50 4.66 -76.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032881113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.048 kcal (2) G-P(sol) polarization free energy of solvation -81.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds