Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47055 * 269.99880 * 3 2 1 5 5 H 1.48499 * 109.46909 * 30.00020 * 3 2 1 6 6 H 1.48497 * 109.47150 * 149.99826 * 3 2 1 7 7 C 1.37879 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99987 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46726 * 180.02562 * 9 7 2 11 11 C 1.36327 * 125.86872 * 85.03084 * 10 9 7 12 12 C 1.35124 * 108.90125 * 180.02562 * 11 10 9 13 13 C 1.40984 * 108.23887 * 359.97438 * 12 11 10 14 14 N 1.33306 * 126.35497 * 180.02562 * 13 12 11 15 15 C 1.32904 * 119.99856 * 359.96777 * 14 13 12 16 16 O 1.21592 * 120.00571 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99599 * 180.02562 * 15 14 13 18 18 N 1.46497 * 109.46994 * 180.02562 * 17 15 14 19 19 C 1.34776 * 120.00201 * 180.02562 * 18 17 15 20 20 O 1.21698 * 119.99637 * 0.02562 * 19 18 17 21 21 C 1.46653 * 120.00350 * 179.97438 * 19 18 17 22 22 C 1.36544 * 125.99164 * 179.71518 * 21 19 18 23 23 C 1.40359 * 106.71345 * 179.91346 * 22 21 19 24 24 C 1.35135 * 107.11292 * 0.35283 * 23 22 21 25 25 O 1.33933 * 108.76614 * 359.78189 * 24 23 22 26 26 N 1.37278 * 107.28475 * 0.02562 * 13 12 11 27 27 H 0.97003 * 126.35142 * 180.02562 * 26 13 12 28 28 H 0.96997 * 120.00104 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47064 * 60.00023 * 9 7 2 30 30 H 1.09000 * 109.46816 * 299.99926 * 9 7 2 31 31 H 1.08005 * 125.55248 * 0.27059 * 11 10 9 32 32 H 1.08002 * 125.87920 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.46948 * 300.00604 * 17 15 14 34 34 H 1.08997 * 109.46917 * 60.00863 * 17 15 14 35 35 H 0.97008 * 120.00091 * 359.97438 * 18 17 15 36 36 H 1.08005 * 126.63957 * 0.04263 * 22 21 19 37 37 H 1.07999 * 126.44661 * 180.15256 * 23 22 21 38 38 H 1.08000 * 125.62085 * 179.78048 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.1763 -3.3601 -1.0997 12 6 4.6385 -4.5675 -0.7069 13 6 4.7637 -4.5565 0.6973 14 7 5.1896 -5.5630 1.4606 15 6 5.5451 -6.7158 0.9027 16 8 5.4823 -6.8522 -0.3039 17 6 6.0260 -7.8538 1.7657 18 7 6.3545 -9.0035 0.9192 19 6 6.8077 -10.1436 1.4772 20 8 6.9435 -10.2181 2.6843 21 6 7.1360 -11.2947 0.6299 22 6 7.6069 -12.5011 1.0625 23 6 7.7795 -13.2998 -0.0787 24 6 7.4184 -12.5527 -1.1452 25 8 7.0313 -11.3451 -0.7142 26 7 4.3656 -3.3170 1.1327 27 1 4.3423 -3.0108 2.0528 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 3.9823 -3.0636 -2.1200 32 1 4.8726 -5.3977 -1.3568 33 1 6.9140 -7.5425 2.3158 34 1 5.2418 -8.1327 2.4694 35 1 6.2452 -8.9444 -0.0429 36 1 7.8059 -12.7862 2.0851 37 1 8.1369 -14.3187 -0.1006 38 1 7.4386 -12.8760 -2.1755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344688466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = 57.761492 kcal Electronic energy + Delta-G solvation = -24483.306073 eV Core-core repulsion = 20524.091730 eV Total energy + Delta-G solvation = -3959.214343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.88374 -41.10897 -39.66934 -38.49226 -34.82956 -34.18956 -33.25328 -33.03099 -31.31428 -31.25560 -30.44424 -28.25080 -26.83937 -23.59416 -22.77674 -22.00647 -21.68637 -21.45595 -20.41621 -19.61416 -18.54467 -17.52335 -17.08218 -16.56829 -16.52478 -16.22225 -15.49217 -15.43424 -15.09812 -14.92941 -14.63598 -14.30969 -13.87721 -13.76320 -13.30584 -13.23255 -13.15116 -12.90732 -12.88935 -12.77384 -12.45649 -12.29089 -11.58897 -11.11045 -10.78261 -10.45083 -10.31238 -10.15954 -9.80435 -9.61198 -9.26943 -9.25672 -9.12398 -8.86868 -8.63096 -7.16936 -6.59305 -4.69080 0.87016 1.39560 1.78548 2.11471 2.48536 2.75809 2.90558 2.94580 3.02004 3.06576 3.11499 3.90277 3.98265 4.10477 4.49064 4.62443 4.65078 4.69886 4.80728 5.02869 5.37969 5.50728 5.53562 5.61982 5.67578 5.71455 5.73268 5.93651 6.01434 6.06071 6.13743 6.32511 6.51475 6.60535 6.82869 7.18592 7.34418 7.43884 7.65805 7.91349 8.00396 8.05287 8.43226 8.92189 9.07083 10.52080 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.039683 B = 0.001950 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.425787 B =14357.461838 C =14644.098891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.085 3.915 3 Si 0.875 3.125 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.226 3.774 10 N -0.335 5.335 11 C 0.168 3.832 12 C -0.328 4.328 13 C 0.474 3.526 14 N -0.695 5.695 15 C 0.491 3.509 16 O -0.586 6.586 17 C 0.124 3.876 18 N -0.704 5.704 19 C 0.601 3.399 20 O -0.526 6.526 21 C -0.073 4.073 22 C -0.124 4.124 23 C -0.227 4.227 24 C -0.008 4.008 25 O -0.161 6.161 26 N -0.460 5.460 27 H 0.448 0.552 28 H 0.274 0.726 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.192 0.808 32 H 0.187 0.813 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.415 0.585 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.383 -14.943 -2.854 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.606 4.606 8 H 0.104 0.896 9 C 0.109 3.891 10 N -0.120 5.120 11 C 0.022 3.978 12 C -0.360 4.360 13 C 0.225 3.775 14 N -0.460 5.460 15 C 0.275 3.725 16 O -0.469 6.469 17 C -0.002 4.002 18 N -0.358 5.358 19 C 0.387 3.613 20 O -0.404 6.404 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.246 4.246 24 C -0.078 4.078 25 O -0.056 6.056 26 N -0.182 5.182 27 H 0.296 0.704 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.209 0.791 32 H 0.204 0.796 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.253 0.747 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 13.087 -14.235 -1.815 19.421 hybrid contribution 0.109 0.819 -0.586 1.013 sum 13.196 -13.416 -2.401 18.971 Atomic orbital electron populations 1.69846 1.06263 1.28005 1.46725 1.24823 0.94877 0.99002 0.93534 0.86888 0.80193 0.83580 0.79319 1.19300 1.20194 1.18954 1.21217 0.87651 0.95998 1.55733 0.89598 1.20418 0.97022 0.71770 0.99905 1.47596 1.55742 1.11947 0.96693 1.22943 0.92280 0.90407 0.92152 1.22500 1.18080 1.00296 0.95093 1.19130 0.84850 0.83645 0.89918 1.68580 1.38542 1.01728 1.37131 1.20541 0.77872 0.87237 0.86803 1.90539 1.54719 1.84479 1.17149 1.20737 1.02418 0.84251 0.92795 1.45718 1.65242 1.12223 1.12575 1.16487 0.77811 0.80740 0.86282 1.90883 1.54552 1.82332 1.12664 1.22113 1.11388 0.98188 0.80826 1.21969 0.99817 0.91761 1.00909 1.21859 1.08669 1.02173 0.91934 1.24440 1.00297 0.82570 1.00476 1.84113 1.65973 1.33824 1.21645 1.44552 1.60658 1.09394 1.03608 0.70447 0.91595 0.93149 0.91945 0.79084 0.79635 0.88542 0.88483 0.74659 0.82202 0.82627 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.33 13.96 55.43 0.77 -22.56 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 17.33 27.47 -169.99 -4.67 12.66 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -4.86 6.54 56.52 0.37 -4.49 16 7 C -0.57 -13.27 9.94 -34.44 -0.34 -13.61 16 8 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.23 4.11 5.26 -5.19 -0.03 4.08 16 10 N -0.34 -5.63 3.63 -62.23 -0.23 -5.85 16 11 C 0.17 2.54 11.46 -16.66 -0.19 2.35 16 12 C -0.33 -5.53 9.51 -39.65 -0.38 -5.91 16 13 C 0.47 8.45 8.07 -155.19 -1.25 7.20 16 14 N -0.70 -12.70 10.51 -11.59 -0.12 -12.82 16 15 C 0.49 8.68 7.78 -11.81 -0.09 8.59 16 16 O -0.59 -11.08 12.57 5.28 0.07 -11.01 16 17 C 0.12 1.86 6.23 -5.19 -0.03 1.83 16 18 N -0.70 -10.04 5.52 -62.81 -0.35 -10.39 16 19 C 0.60 8.66 7.79 -12.86 -0.10 8.56 16 20 O -0.53 -8.77 16.87 5.19 0.09 -8.69 16 21 C -0.07 -0.90 7.13 -36.80 -0.26 -1.16 16 22 C -0.12 -1.30 10.62 -39.40 -0.42 -1.72 16 23 C -0.23 -1.80 10.87 -39.89 -0.43 -2.23 16 24 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 25 O -0.16 -1.76 10.40 4.99 0.05 -1.71 16 26 N -0.46 -7.51 7.37 31.32 0.23 -7.28 16 27 H 0.45 6.33 8.96 -182.55 -1.64 4.69 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.05 0.88 7.20 -51.93 -0.37 0.51 16 30 H 0.06 1.02 7.57 -51.93 -0.39 0.63 16 31 H 0.19 2.19 8.06 -52.48 -0.42 1.76 16 32 H 0.19 3.24 5.77 -52.49 -0.30 2.94 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.42 5.85 7.19 -40.82 -0.29 5.56 16 36 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -31.25 342.84 -7.38 -38.63 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.13 Total: 13.62 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -3.27 Total: 10.23 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.31 Total: -58.90 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.21 Total: -21.41 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -4.67 Total: 12.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.25 -7.38 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344688466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.389 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds