Wall clock time and date at job start Tue Mar 31 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47055 * 269.99880 * 3 2 1 5 5 H 1.48499 * 109.46909 * 30.00020 * 3 2 1 6 6 H 1.48497 * 109.47150 * 149.99826 * 3 2 1 7 7 C 1.37879 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99987 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46726 * 180.02562 * 9 7 2 11 11 C 1.36327 * 125.86872 * 85.03084 * 10 9 7 12 12 C 1.35124 * 108.90125 * 180.02562 * 11 10 9 13 13 C 1.40984 * 108.23887 * 359.97438 * 12 11 10 14 14 N 1.33306 * 126.35497 * 180.02562 * 13 12 11 15 15 C 1.32904 * 119.99856 * 359.96777 * 14 13 12 16 16 O 1.21592 * 120.00571 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99599 * 180.02562 * 15 14 13 18 18 N 1.46497 * 109.46994 * 180.02562 * 17 15 14 19 19 C 1.34776 * 120.00201 * 180.02562 * 18 17 15 20 20 O 1.21698 * 119.99637 * 0.02562 * 19 18 17 21 21 C 1.46653 * 120.00350 * 179.97438 * 19 18 17 22 22 C 1.36544 * 125.99164 * 179.71518 * 21 19 18 23 23 C 1.40359 * 106.71345 * 179.91346 * 22 21 19 24 24 C 1.35135 * 107.11292 * 0.35283 * 23 22 21 25 25 O 1.33933 * 108.76614 * 359.78189 * 24 23 22 26 26 N 1.37278 * 107.28475 * 0.02562 * 13 12 11 27 27 H 0.97003 * 126.35142 * 180.02562 * 26 13 12 28 28 H 0.96997 * 120.00104 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47064 * 60.00023 * 9 7 2 30 30 H 1.09000 * 109.46816 * 299.99926 * 9 7 2 31 31 H 1.08005 * 125.55248 * 0.27059 * 11 10 9 32 32 H 1.08002 * 125.87920 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.46948 * 300.00604 * 17 15 14 34 34 H 1.08997 * 109.46917 * 60.00863 * 17 15 14 35 35 H 0.97008 * 120.00091 * 359.97438 * 18 17 15 36 36 H 1.08005 * 126.63957 * 0.04263 * 22 21 19 37 37 H 1.07999 * 126.44661 * 180.15256 * 23 22 21 38 38 H 1.08000 * 125.62085 * 179.78048 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.1763 -3.3601 -1.0997 12 6 4.6385 -4.5675 -0.7069 13 6 4.7637 -4.5565 0.6973 14 7 5.1896 -5.5630 1.4606 15 6 5.5451 -6.7158 0.9027 16 8 5.4823 -6.8522 -0.3039 17 6 6.0260 -7.8538 1.7657 18 7 6.3545 -9.0035 0.9192 19 6 6.8077 -10.1436 1.4772 20 8 6.9435 -10.2181 2.6843 21 6 7.1360 -11.2947 0.6299 22 6 7.6069 -12.5011 1.0625 23 6 7.7795 -13.2998 -0.0787 24 6 7.4184 -12.5527 -1.1452 25 8 7.0313 -11.3451 -0.7142 26 7 4.3656 -3.3170 1.1327 27 1 4.3423 -3.0108 2.0528 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 3.9823 -3.0636 -2.1200 32 1 4.8726 -5.3977 -1.3568 33 1 6.9140 -7.5425 2.3158 34 1 5.2418 -8.1327 2.4694 35 1 6.2452 -8.9444 -0.0429 36 1 7.8059 -12.7862 2.0851 37 1 8.1369 -14.3187 -0.1006 38 1 7.4386 -12.8760 -2.1755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344688466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:16 Heat of formation + Delta-G solvation = 33.820205 kcal Electronic energy + Delta-G solvation = -24484.344245 eV Core-core repulsion = 20524.091730 eV Total energy + Delta-G solvation = -3960.252515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.63462 -42.43900 -40.86031 -39.79971 -36.15824 -35.56764 -34.64036 -34.01045 -32.77420 -32.61666 -31.34723 -29.53838 -28.23216 -24.84433 -24.08538 -23.02606 -22.77241 -22.63142 -21.43052 -20.82030 -19.57842 -19.28751 -18.45684 -17.57052 -17.44106 -17.31088 -16.77129 -16.72128 -16.50678 -16.20332 -15.82774 -15.68480 -15.17019 -14.92976 -14.69857 -14.33310 -14.19125 -14.08144 -13.90462 -13.87998 -13.61396 -13.53294 -13.16671 -12.61489 -12.26129 -11.85916 -11.59684 -11.32255 -11.03656 -10.98785 -10.91820 -10.58287 -10.40602 -10.04136 -9.65232 -8.56932 -8.42483 -6.57881 0.01653 0.05659 0.47781 1.39138 1.40306 1.43438 1.44721 1.48961 1.64540 2.05882 2.13080 2.25225 2.66418 2.73461 2.92026 3.36003 3.71478 3.83911 3.97601 4.12084 4.22984 4.37779 4.45390 4.48642 4.53224 4.63382 4.69418 4.83656 4.92181 4.96415 5.12412 5.14321 5.20721 5.42020 5.83048 5.85129 5.96116 6.05335 6.35383 6.41672 6.52777 6.69370 6.89688 7.08471 7.68780 8.72729 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.039683 B = 0.001950 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.425787 B =14357.461838 C =14644.098891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.256 1.256 5 H -0.290 1.290 6 H -0.232 1.232 7 C -0.568 4.568 8 H 0.034 0.966 9 C 0.232 3.768 10 N -0.340 5.340 11 C 0.183 3.817 12 C -0.341 4.341 13 C 0.456 3.544 14 N -0.708 5.708 15 C 0.483 3.517 16 O -0.603 6.603 17 C 0.132 3.868 18 N -0.703 5.703 19 C 0.601 3.399 20 O -0.558 6.558 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.232 4.232 24 C 0.009 3.991 25 O -0.176 6.176 26 N -0.457 5.457 27 H 0.455 0.545 28 H 0.273 0.727 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.231 0.769 32 H 0.180 0.820 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.416 0.584 36 H 0.163 0.837 37 H 0.187 0.813 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.546 -14.885 -4.254 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.180 1.180 5 H -0.216 1.216 6 H -0.155 1.155 7 C -0.606 4.606 8 H 0.052 0.948 9 C 0.114 3.886 10 N -0.125 5.125 11 C 0.037 3.963 12 C -0.372 4.372 13 C 0.207 3.793 14 N -0.473 5.473 15 C 0.269 3.731 16 O -0.487 6.487 17 C 0.006 3.994 18 N -0.356 5.356 19 C 0.389 3.611 20 O -0.440 6.440 21 C -0.165 4.165 22 C -0.140 4.140 23 C -0.251 4.251 24 C -0.060 4.060 25 O -0.071 6.071 26 N -0.180 5.180 27 H 0.305 0.695 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.247 0.753 32 H 0.197 0.803 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.254 0.746 36 H 0.181 0.819 37 H 0.205 0.795 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 15.279 -14.194 -3.211 21.101 hybrid contribution -0.603 0.632 -0.222 0.901 sum 14.677 -13.563 -3.433 20.276 Atomic orbital electron populations 1.70028 1.08740 1.29053 1.49421 1.25833 0.95533 1.03446 0.92946 0.85708 0.79655 0.77504 0.80054 1.17990 1.21577 1.15452 1.21406 0.90597 0.93923 1.54651 0.94784 1.20346 0.93379 0.72720 1.02178 1.47588 1.55780 1.11948 0.97158 1.23542 0.90143 0.89306 0.93260 1.22460 1.19062 1.00986 0.94711 1.19359 0.85293 0.83991 0.90648 1.68612 1.39015 1.02095 1.37556 1.20918 0.77631 0.87662 0.86906 1.90518 1.55526 1.84830 1.17817 1.20631 1.02563 0.83803 0.92442 1.45692 1.65343 1.12140 1.12419 1.16752 0.76970 0.81077 0.86251 1.90846 1.56099 1.83017 1.13994 1.21755 1.14919 0.98200 0.81616 1.22278 0.98180 0.91483 1.02072 1.22239 1.08665 1.03403 0.90746 1.25446 0.97233 0.80963 1.02374 1.84102 1.66561 1.35577 1.20885 1.44580 1.60341 1.09014 1.04052 0.69547 0.91758 0.91307 0.88448 0.75276 0.80315 0.87974 0.88399 0.74596 0.81922 0.79527 0.72964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.29 13.96 21.45 0.30 -50.99 16 2 C 0.02 1.12 5.47 84.66 0.46 1.59 16 3 Si 0.95 34.09 27.47 68.60 1.88 35.97 16 4 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 5 H -0.29 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.03 6.54 99.48 0.65 -6.38 16 7 C -0.57 -26.30 9.94 25.60 0.25 -26.05 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 9 C 0.23 7.72 5.26 85.64 0.45 8.17 16 10 N -0.34 -10.75 3.63 -350.79 -1.27 -12.02 16 11 C 0.18 5.17 11.46 83.28 0.95 6.12 16 12 C -0.34 -11.28 9.51 22.23 0.21 -11.07 16 13 C 0.46 16.18 8.07 133.83 1.08 17.26 16 14 N -0.71 -26.14 10.51 -309.88 -3.26 -29.39 16 15 C 0.48 17.43 7.78 87.95 0.68 18.12 16 16 O -0.60 -23.18 12.57 -4.01 -0.05 -23.23 16 17 C 0.13 4.08 6.23 85.64 0.53 4.62 16 18 N -0.70 -20.71 5.52 -470.83 -2.60 -23.31 16 19 C 0.60 17.91 7.79 86.44 0.67 18.58 16 20 O -0.56 -19.33 16.87 -4.34 -0.07 -19.40 16 21 C -0.11 -2.80 7.13 24.07 0.17 -2.63 16 22 C -0.12 -2.40 10.62 22.39 0.24 -2.16 16 23 C -0.23 -3.04 10.87 22.07 0.24 -2.80 16 24 C 0.01 0.11 12.08 67.10 0.81 0.92 16 25 O -0.18 -3.68 10.40 -5.07 -0.05 -3.73 16 26 N -0.46 -14.50 7.37 -54.81 -0.40 -14.91 16 27 H 0.46 12.50 8.96 -213.28 -1.91 10.59 16 28 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.07 2.11 7.20 -2.39 -0.02 2.10 16 30 H 0.10 2.70 7.57 -2.39 -0.02 2.68 16 31 H 0.23 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.18 6.24 5.77 -2.91 -0.02 6.22 16 33 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 34 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.42 12.09 7.19 -92.70 -0.67 11.42 16 36 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.25 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -71.50 342.84 -0.26 -71.75 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -1.49 Total: 38.59 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 6.76 Total: 30.67 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -7.24 Total: -130.62 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.18 Total: -46.37 kcal Atomic # 14 Polarization: 34.09 SS G_CDS: 1.88 Total: 35.97 kcal Total: -71.50 -0.26 -71.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344688466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.574 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds