Wall clock time and date at job start Tue Mar 31 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00228 * 2 1 4 4 O 1.21616 * 119.99742 * 182.48064 * 3 2 1 5 5 C 1.47341 * 119.99820 * 2.47980 * 3 2 1 6 6 N 1.35212 * 126.56057 * 355.06678 * 5 3 2 7 7 C 1.29990 * 108.84411 * 180.02562 * 6 5 3 8 8 O 1.33997 * 109.69831 * 359.75357 * 7 6 5 9 9 C 1.34775 * 108.10597 * 0.40215 * 8 7 6 10 10 C 1.47763 * 126.76326 * 179.87382 * 9 8 7 11 11 C 1.42488 * 126.97020 * 359.68747 * 10 9 8 12 12 C 1.35177 * 103.92746 * 179.73839 * 11 10 9 13 13 O 1.34075 * 106.74249 * 359.97438 * 12 11 10 14 14 N 1.20905 * 111.89640 * 0.02562 * 13 12 11 15 15 C 1.46506 * 119.99898 * 180.02562 * 2 1 3 16 16 C 1.53943 * 113.73902 * 38.73808 * 15 2 1 17 17 N 1.47819 * 86.03327 * 222.08622 * 16 15 2 18 18 C 1.36937 * 134.45302 * 204.64894 * 17 16 15 19 19 H 1.08002 * 119.99742 * 179.87043 * 18 17 16 20 20 C 1.38811 * 120.00500 * 359.86407 * 18 17 16 21 21 N 1.31624 * 119.99787 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00125 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47324 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47219 * 120.00024 * 22 20 18 25 25 H 1.48505 * 109.47006 * 239.99756 * 22 20 18 26 26 C 1.47580 * 91.04820 * 24.55115 * 17 16 15 27 27 H 1.09003 * 109.47276 * 83.91048 * 1 2 3 28 28 H 1.08997 * 109.47540 * 203.91739 * 1 2 3 29 29 H 1.09007 * 109.47007 * 323.91620 * 1 2 3 30 30 H 1.08003 * 125.15154 * 179.97438 * 7 6 5 31 31 H 1.07994 * 128.03498 * 359.71393 * 11 10 9 32 32 H 1.08001 * 126.63171 * 180.02562 * 12 11 10 33 33 H 1.08999 * 112.94181 * 170.33219 * 15 2 1 34 34 H 1.08993 * 113.77525 * 336.34541 * 16 15 2 35 35 H 1.09003 * 113.77143 * 107.75074 * 16 15 2 36 36 H 0.96993 * 119.99674 * 179.97438 * 21 20 18 37 37 H 1.09001 * 113.76270 * 221.14783 * 26 17 16 38 38 H 1.08998 * 113.76741 * 89.76187 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3542 1.1676 -0.0456 5 6 1.4032 2.4426 0.0552 6 7 0.0609 2.6006 0.0155 7 6 -0.2149 3.8689 0.0868 8 8 0.9210 4.5736 0.1798 9 6 1.9539 3.7081 0.1570 10 6 3.3909 4.0439 0.2325 11 6 3.9626 5.3448 0.3374 12 6 5.2937 5.1130 0.3784 13 8 5.4568 3.7843 0.3030 14 7 4.3992 3.2040 0.2225 15 6 2.1974 -1.2688 -0.0006 16 6 1.5554 -2.3547 -0.8829 17 7 1.8609 -3.2880 0.2219 18 6 2.0637 -4.6396 0.3071 19 1 2.2807 -5.0939 1.2627 20 6 1.9904 -5.4259 -0.8344 21 7 1.7264 -4.8722 -1.9990 22 14 2.2664 -7.2697 -0.7180 23 1 2.5450 -7.6404 0.6927 24 1 1.0511 -7.9827 -1.1869 25 1 3.4231 -7.6516 -1.5674 26 6 1.8620 -2.1785 1.1951 27 1 -0.3634 0.1090 -1.0219 28 1 -0.3634 -0.9394 0.4166 29 1 -0.3633 0.8306 0.6053 30 1 -1.2091 4.2905 0.0766 31 1 3.4512 6.2953 0.3749 32 1 6.0748 5.8546 0.4576 33 1 3.2668 -1.1419 -0.1691 34 1 0.4886 -2.2090 -1.0525 35 1 2.1089 -2.5604 -1.7991 36 1 1.6755 -5.4215 -2.7967 37 1 2.6598 -2.2439 1.9349 38 1 0.8854 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044195021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:12 Heat of formation + Delta-G solvation = 154.277460 kcal Electronic energy + Delta-G solvation = -26323.079529 eV Core-core repulsion = 22368.050433 eV Total energy + Delta-G solvation = -3955.029096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.13982 -43.62557 -39.57181 -37.50802 -35.38153 -34.64119 -34.06556 -32.02003 -31.89294 -30.14606 -27.72377 -26.50162 -25.21831 -24.74547 -24.13749 -23.10448 -22.53218 -21.57424 -20.03779 -18.75368 -18.38467 -17.83556 -17.35244 -16.98773 -16.82104 -16.48438 -15.96454 -15.33551 -14.98682 -14.75384 -14.64092 -13.83230 -13.70917 -13.54347 -13.41399 -12.83588 -12.37801 -12.21934 -11.79609 -11.67251 -11.49305 -11.45265 -11.26149 -11.22498 -10.84916 -10.68006 -10.50116 -10.14062 -10.00237 -9.97703 -9.58210 -9.50059 -8.88834 -8.76746 -7.97820 -6.86494 -5.74633 -3.07376 0.39032 1.37066 1.88924 1.94477 2.30202 3.04194 3.22057 3.42087 3.46989 3.49352 3.49778 3.75901 3.96173 4.17127 4.48478 4.62766 4.81002 4.88153 5.04055 5.22868 5.26415 5.47882 5.52159 5.58317 5.61217 5.62217 5.76734 6.07704 6.12198 6.25461 6.37915 6.52247 6.64445 6.90426 7.14433 7.25754 7.42454 7.56801 7.83213 7.99135 8.05573 8.49669 9.06243 9.72324 10.60040 11.42664 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.003141 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.203364 B = 8910.851528 C = 9881.603090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.582 5.582 3 C 0.577 3.423 4 O -0.504 6.504 5 C -0.014 4.014 6 N -0.454 5.454 7 C 0.183 3.817 8 O -0.188 6.188 9 C 0.087 3.913 10 C 0.053 3.947 11 C -0.213 4.213 12 C -0.066 4.066 13 O 0.128 5.872 14 N -0.258 5.258 15 C 0.091 3.909 16 C 0.158 3.842 17 N -0.606 5.606 18 C -0.221 4.221 19 H 0.082 0.918 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.109 3.891 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.260 0.740 31 H 0.176 0.824 32 H 0.220 0.780 33 H 0.117 0.883 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.254 0.746 37 H 0.047 0.953 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 26.161 4.722 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.314 5.314 3 C 0.362 3.638 4 O -0.378 6.378 5 C -0.138 4.138 6 N -0.182 5.182 7 C -0.044 4.044 8 O -0.073 6.073 9 C 0.030 3.970 10 C -0.103 4.103 11 C -0.235 4.235 12 C -0.146 4.146 13 O 0.047 5.953 14 N 0.048 4.952 15 C -0.012 4.012 16 C 0.032 3.968 17 N -0.333 5.333 18 C -0.349 4.349 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.216 1.216 26 C -0.018 4.018 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.276 0.724 31 H 0.193 0.807 32 H 0.237 0.763 33 H 0.135 0.865 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.737 23.977 4.449 24.397 hybrid contribution -0.310 0.544 0.045 0.628 sum -1.047 24.521 4.494 24.951 Atomic orbital electron populations 1.22111 0.78864 1.03360 1.02372 1.47848 1.07602 1.05336 1.70608 1.16889 0.86531 0.81749 0.78590 1.90943 1.11607 1.85896 1.49351 1.22168 0.89108 0.94629 1.07881 1.70771 1.13426 1.17222 1.16823 1.28315 0.90737 0.85729 0.99649 1.84356 1.15236 1.38367 1.69370 1.19674 0.85692 0.86802 1.04829 1.20184 0.89597 0.90722 1.09784 1.22765 0.93858 0.98444 1.08398 1.25978 0.98512 0.86491 1.03653 1.85064 1.27632 1.17855 1.64757 1.75161 0.90515 1.17460 1.12114 1.24089 0.98070 0.79481 0.99557 1.22668 0.96968 0.83348 0.93821 1.45709 1.81970 1.02183 1.03432 1.19043 1.41263 0.80208 0.94346 0.90005 1.24808 1.02028 0.98250 0.95365 1.69835 1.54715 1.34142 0.97996 0.86013 0.77378 0.84803 0.77363 1.20425 1.21751 1.21647 1.22973 0.98079 0.87257 0.93491 0.92867 0.91091 0.89039 0.72425 0.80698 0.76349 0.86524 0.94899 0.90506 0.93640 0.93480 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 8.29 59.84 0.50 1.71 16 2 N -0.58 -10.94 3.09 -177.05 -0.55 -11.49 16 3 C 0.58 10.91 7.67 -12.56 -0.10 10.81 16 4 O -0.50 -10.70 12.90 5.26 0.07 -10.64 16 5 C -0.01 -0.21 6.73 -82.62 -0.56 -0.77 16 6 N -0.45 -5.70 7.81 -11.16 -0.09 -5.79 16 7 C 0.18 1.52 13.16 51.98 0.68 2.20 16 8 O -0.19 -1.92 10.75 5.22 0.06 -1.86 16 9 C 0.09 1.19 7.37 -35.64 -0.26 0.93 16 10 C 0.05 0.71 7.11 -82.60 -0.59 0.12 16 11 C -0.21 -1.87 11.15 -39.04 -0.44 -2.31 16 12 C -0.07 -0.48 12.27 29.64 0.36 -0.12 16 13 O 0.13 1.53 11.18 17.09 0.19 1.72 16 14 N -0.26 -4.04 8.73 33.27 0.29 -3.75 16 15 C 0.09 1.97 4.41 -70.15 -0.31 1.66 16 16 C 0.16 3.92 6.93 -2.84 -0.02 3.90 16 17 N -0.61 -16.24 3.70 -177.90 -0.66 -16.90 16 18 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 19 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.89 11.39 55.49 0.63 -27.26 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.11 2.42 8.43 -2.97 -0.03 2.39 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.18 6.13 -51.93 -0.32 0.86 16 29 H 0.09 1.32 5.35 -51.92 -0.28 1.04 16 30 H 0.26 0.58 8.06 -52.48 -0.42 0.16 16 31 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.22 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.12 2.70 7.21 -51.93 -0.37 2.33 16 34 H 0.03 0.81 6.69 -51.93 -0.35 0.46 16 35 H 0.08 2.12 7.16 -51.93 -0.37 1.75 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.75 6.93 -51.93 -0.36 0.39 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -37.24 326.23 -4.88 -42.12 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.71 Total: -2.31 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -1.00 Total: 13.66 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.37 Total: -65.19 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.32 Total: -10.77 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.24 -4.88 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044195021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.393 kcal (2) G-P(sol) polarization free energy of solvation -37.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds