Wall clock time and date at job start Tue Mar 31 2020 04:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47068 * 2 1 4 4 O 1.42904 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.35946 * 117.00050 * 179.97438 * 4 3 2 6 6 C 1.38737 * 119.98989 * 180.02562 * 5 4 3 7 7 C 1.38079 * 120.01044 * 180.02562 * 6 5 4 8 8 C 1.38818 * 119.98874 * 359.97438 * 7 6 5 9 9 N 1.40346 * 120.00806 * 179.97438 * 8 7 6 10 10 C 1.33881 * 122.75966 * 112.73801 * 9 8 7 11 11 O 1.21226 * 125.39649 * 0.24792 * 10 9 8 12 12 C 1.51319 * 109.20444 * 179.97438 * 10 9 8 13 13 C 1.54223 * 103.55551 * 359.97438 * 12 10 9 14 14 H 1.09000 * 110.60779 * 241.48094 * 13 12 10 15 15 N 1.46508 * 110.60713 * 118.67451 * 13 12 10 16 16 C 1.36939 * 120.00165 * 154.99928 * 15 13 12 17 17 H 1.08004 * 119.99845 * 359.97438 * 16 15 13 18 18 C 1.38807 * 119.99881 * 180.02562 * 16 15 13 19 19 N 1.31616 * 120.00254 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00111 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47269 * 90.00226 * 20 18 16 22 22 H 1.48506 * 109.47242 * 210.00602 * 20 18 16 23 23 H 1.48504 * 109.47078 * 330.00022 * 20 18 16 24 24 C 1.33881 * 122.76475 * 292.71776 * 9 8 7 25 25 O 1.21235 * 125.39243 * 0.04195 * 24 9 8 26 26 C 1.38805 * 119.98212 * 0.25915 * 8 7 6 27 27 C 1.38080 * 119.99143 * 359.46061 * 26 8 7 28 28 H 1.08993 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47489 * 300.00816 * 1 2 3 30 30 H 1.09005 * 109.46711 * 59.99971 * 1 2 3 31 31 H 1.08994 * 109.47224 * 239.99794 * 2 1 3 32 32 H 1.09001 * 109.46920 * 119.99565 * 2 1 3 33 33 H 1.09010 * 109.47478 * 59.99512 * 3 2 1 34 34 H 1.09005 * 109.47378 * 299.99620 * 3 2 1 35 35 H 1.07999 * 119.99218 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.00322 * 180.02562 * 7 6 5 37 37 H 1.08997 * 110.60327 * 118.51968 * 12 10 9 38 38 H 1.08996 * 110.60500 * 241.48621 * 12 10 9 39 39 H 0.97005 * 119.99496 * 334.99798 * 15 13 12 40 40 H 0.96991 * 120.00224 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.00688 * 179.74582 * 26 8 7 42 42 H 1.08004 * 120.00046 * 180.27470 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0862 2.6539 0.0001 6 6 5.4717 2.7263 0.0001 7 6 6.0989 3.9563 0.0002 8 6 5.3430 5.1207 -0.0003 9 7 5.9802 6.3712 0.0003 10 6 5.9221 7.2143 -1.0380 11 8 5.3272 7.0118 -2.0746 12 6 6.7113 8.4630 -0.7099 13 6 7.2405 8.1927 0.7132 14 1 6.8559 8.9348 1.4129 15 7 8.7055 8.1851 0.7259 16 6 9.3818 8.4749 1.8808 17 1 8.8353 8.7095 2.7823 18 6 10.7699 8.4682 1.8925 19 7 11.4200 8.7463 3.0026 20 14 11.7152 8.0632 0.3331 21 1 11.9752 9.3124 -0.4267 22 1 13.0067 7.4226 0.6894 23 1 10.9152 7.1326 -0.5031 24 6 6.6957 6.8193 1.0394 25 8 6.8779 6.2197 2.0772 26 6 3.9569 5.0478 0.0046 27 6 3.3304 3.8173 -0.0013 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9565 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 6.0596 1.8203 0.0009 36 1 7.1775 4.0126 -0.0002 37 1 7.5377 8.5893 -1.4094 38 1 6.0634 9.3394 -0.7177 39 1 9.1964 7.9748 -0.0840 40 1 12.3898 8.7412 3.0109 41 1 3.3684 5.9534 0.0084 42 1 2.2519 3.7605 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018276618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:47 Heat of formation + Delta-G solvation = -53.473504 kcal Electronic energy + Delta-G solvation = -26010.277342 eV Core-core repulsion = 22149.779831 eV Total energy + Delta-G solvation = -3860.497511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87366 -40.16429 -38.20602 -37.73523 -35.68853 -34.98160 -34.15915 -32.32759 -31.24743 -30.46648 -28.54376 -26.81295 -25.54906 -23.45053 -23.36295 -22.67033 -21.61799 -21.36486 -19.55770 -18.42568 -18.14741 -17.42917 -16.81816 -16.60517 -16.03340 -15.84656 -15.14927 -14.71913 -14.53429 -14.49410 -14.30401 -14.20354 -13.72772 -13.64990 -13.35451 -13.25337 -13.02363 -12.78467 -12.73332 -12.47823 -12.40329 -11.69833 -11.61117 -11.59403 -11.27798 -11.11999 -11.09492 -10.96466 -10.56816 -10.27448 -9.95799 -9.77328 -9.74036 -9.16500 -9.11207 -8.22332 -7.60299 -5.95678 -3.37165 1.14177 1.19802 1.84358 2.70678 2.91073 3.02036 3.25097 3.26547 3.34892 3.55838 4.38892 4.41031 4.43721 4.45853 4.64019 4.70718 4.72323 4.77867 4.78480 4.95489 4.99379 5.06399 5.12767 5.20298 5.23082 5.35289 5.41608 5.46547 5.52107 5.59062 5.62586 5.77544 5.83173 5.84532 6.06462 6.11287 6.18268 6.31967 6.58133 7.07376 7.18595 7.60004 7.71747 8.18627 8.22952 8.91960 9.62598 9.74209 11.20673 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.002829 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.028173 B = 9896.544336 C =10375.990009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.057 3.943 4 O -0.314 6.314 5 C 0.133 3.867 6 C -0.140 4.140 7 C -0.060 4.060 8 C 0.081 3.919 9 N -0.532 5.532 10 C 0.532 3.468 11 O -0.492 6.492 12 C -0.165 4.165 13 C 0.161 3.839 14 H 0.116 0.884 15 N -0.711 5.711 16 C -0.261 4.261 17 H 0.100 0.900 18 C 0.018 3.982 19 N -0.917 5.917 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.489 3.511 25 O -0.459 6.459 26 C -0.062 4.062 27 C -0.200 4.200 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.369 0.631 40 H 0.264 0.736 41 H 0.128 0.872 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.940 -11.156 -8.729 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.019 4.019 4 O -0.228 6.228 5 C 0.088 3.912 6 C -0.159 4.159 7 C -0.080 4.080 8 C -0.008 4.008 9 N -0.275 5.275 10 C 0.322 3.678 11 O -0.365 6.365 12 C -0.206 4.206 13 C 0.045 3.955 14 H 0.134 0.866 15 N -0.353 5.353 16 C -0.390 4.390 17 H 0.117 0.883 18 C -0.180 4.180 19 N -0.562 5.562 20 Si 0.710 3.290 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.203 1.203 24 C 0.275 3.725 25 O -0.325 6.325 26 C -0.081 4.081 27 C -0.219 4.219 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.203 0.797 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.919 -11.693 -8.401 24.577 hybrid contribution 0.652 -0.356 -0.990 1.238 sum -19.267 -12.049 -9.391 24.588 Atomic orbital electron populations 1.21694 0.94224 1.02552 1.02274 1.21485 0.96043 0.94813 1.03789 1.22909 0.78477 0.98892 1.01591 1.86060 1.21304 1.26885 1.88579 1.18983 0.92200 0.84049 0.95961 1.20265 0.91312 0.98162 1.06205 1.21003 1.00402 0.90506 0.96041 1.17684 0.91449 0.84875 1.06811 1.44999 1.47605 1.15980 1.18875 1.21033 0.79460 0.85563 0.81761 1.90725 1.42447 1.78261 1.25040 1.22931 1.01713 0.96559 0.99381 1.20956 0.87030 0.92286 0.95205 0.86638 1.42754 0.98457 1.82384 1.11692 1.19082 0.89720 1.41063 0.89126 0.88262 1.24691 0.96127 1.00436 0.96696 1.69685 1.07662 1.53357 1.25515 0.86631 0.80280 0.78409 0.83653 1.20455 1.21248 1.20325 1.23740 0.75527 0.91578 0.81656 1.90709 1.53886 1.63029 1.24856 1.20863 0.92791 0.97829 0.96612 1.21043 1.00035 0.91612 1.09225 0.91705 0.92301 0.92341 0.90797 0.90749 0.91884 0.91910 0.84476 0.84787 0.86065 0.85783 0.79650 0.92574 0.85386 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.80 6.30 -26.73 -0.17 -0.97 16 3 C 0.06 0.46 4.74 37.16 0.18 0.63 16 4 O -0.31 -3.61 10.14 -19.57 -0.20 -3.81 16 5 C 0.13 1.71 6.69 -39.21 -0.26 1.44 16 6 C -0.14 -1.90 9.98 -39.46 -0.39 -2.29 16 7 C -0.06 -0.93 9.79 -39.43 -0.39 -1.31 16 8 C 0.08 1.30 4.95 -83.53 -0.41 0.88 16 9 N -0.53 -8.78 2.61 -59.37 -0.16 -8.93 16 10 C 0.53 8.14 7.96 -11.08 -0.09 8.06 16 11 O -0.49 -8.46 17.60 5.60 0.10 -8.36 16 12 C -0.17 -2.16 6.79 -26.94 -0.18 -2.34 16 13 C 0.16 2.76 3.74 -68.14 -0.25 2.51 16 14 H 0.12 1.86 8.09 -51.93 -0.42 1.44 16 15 N -0.71 -15.32 4.97 -53.63 -0.27 -15.58 16 16 C -0.26 -6.92 10.44 -15.06 -0.16 -7.07 16 17 H 0.10 2.86 8.06 -52.48 -0.42 2.43 16 18 C 0.02 0.51 5.50 -17.43 -0.10 0.42 16 19 N -0.92 -27.62 13.97 55.49 0.78 -26.85 16 20 Si 0.88 20.75 27.73 -169.99 -4.71 16.04 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 24 C 0.49 9.19 7.60 -11.08 -0.08 9.11 16 25 O -0.46 -10.40 17.60 5.60 0.10 -10.30 16 26 C -0.06 -0.85 9.80 -39.43 -0.39 -1.24 16 27 C -0.20 -2.41 9.03 -39.45 -0.36 -2.77 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.46 7.66 -51.92 -0.40 0.07 16 34 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 37 H 0.12 1.50 7.71 -51.93 -0.40 1.10 16 38 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.37 7.67 5.44 -40.82 -0.22 7.45 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 1.22 6.29 -52.48 -0.33 0.89 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -33.72 360.83 -7.17 -40.90 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.56 Total: 6.75 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.69 Total: 4.71 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.35 Total: -51.37 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.00 Total: -22.47 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.72 -7.17 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018276618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.577 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds